data_1EMQ # _entry.id 1EMQ # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EMQ pdb_00001emq 10.2210/pdb1emq/pdb RCSB RCSB010727 ? ? WWPDB D_1000010727 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EMQ _pdbx_database_status.recvd_initial_deposition_date 2000-03-17 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hosur, R.V.' 1 'Patel, P.K.' 2 # _citation.id primary _citation.title 'NMR observation of T-tetrads in a parallel stranded DNA quadruplex formed by Saccharomyces cerevisiae telomere repeats.' _citation.journal_abbrev 'Nucleic Acids Res.' _citation.journal_volume 27 _citation.page_first 2457 _citation.page_last 2464 _citation.year 1999 _citation.journal_id_ASTM NARHAD _citation.country UK _citation.journal_id_ISSN 0305-1048 _citation.journal_id_CSD 0389 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10352174 _citation.pdbx_database_id_DOI 10.1093/nar/27.12.2457 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Patel, P.K.' 1 ? primary 'Hosur, R.V.' 2 ? # _cell.entry_id 1EMQ _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EMQ _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # _entity.id 1 _entity.type polymer _entity.src_method syn _entity.pdbx_description ;DNA (5'-D(*TP*GP*GP*TP*GP*GP*C)-3') ; _entity.formula_weight 2169.433 _entity.pdbx_number_of_molecules 4 _entity.pdbx_ec ? _entity.pdbx_mutation ? _entity.pdbx_fragment 'YEAST TELOMERE REPEATS' _entity.details ;ONLY TWO REPEATS AND ONE C AT 3' END ; # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DT)(DG)(DG)(DT)(DG)(DG)(DC)' _entity_poly.pdbx_seq_one_letter_code_can TGGTGGC _entity_poly.pdbx_strand_id A,B,C,D _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DT n 1 2 DG n 1 3 DG n 1 4 DT n 1 5 DG n 1 6 DG n 1 7 DC n # _pdbx_entity_src_syn.entity_id 1 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'This sequence is two repeats of Saccharomyces cerevisiae telomere sequence' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EMQ _struct_ref.pdbx_db_accession 1EMQ _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1EMQ A 1 ? 7 ? 1EMQ 101 ? 107 ? 101 107 2 1 1EMQ B 1 ? 7 ? 1EMQ 201 ? 207 ? 201 207 3 1 1EMQ C 1 ? 7 ? 1EMQ 401 ? 407 ? 401 407 4 1 1EMQ D 1 ? 7 ? 1EMQ 301 ? 307 ? 301 307 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # loop_ _pdbx_nmr_exptl.experiment_id _pdbx_nmr_exptl.conditions_id _pdbx_nmr_exptl.type _pdbx_nmr_exptl.solution_id 1 1 '2D NOESY' 1 2 1 E-COSY 1 3 1 2D-TOCSY 1 # _pdbx_nmr_exptl_sample_conditions.conditions_id 1 _pdbx_nmr_exptl_sample_conditions.temperature 293 _pdbx_nmr_exptl_sample_conditions.pressure 1 _pdbx_nmr_exptl_sample_conditions.pH 7.0 _pdbx_nmr_exptl_sample_conditions.ionic_strength ? _pdbx_nmr_exptl_sample_conditions.pressure_units atm _pdbx_nmr_exptl_sample_conditions.temperature_units K # loop_ _pdbx_nmr_sample_details.solution_id _pdbx_nmr_sample_details.contents _pdbx_nmr_sample_details.solvent_system 1 '1-2 mM DNA in 0.6 ml(90%H20/10%D2O) having 10 mM potassium phosphate, 0.2 mM EDTA, pH 7.0 and 100 mM KCl' '90% H2O/10% D2O' 2 '1-2 mM DNA in 0.6 ml(D2O) having 10 mM potassium phosphate, 0.2 mM EDTA, pH 7.0 and 100 mM KCl' D2O # loop_ _pdbx_nmr_spectrometer.spectrometer_id _pdbx_nmr_spectrometer.model _pdbx_nmr_spectrometer.manufacturer _pdbx_nmr_spectrometer.field_strength _pdbx_nmr_spectrometer.type 1 UNITYPLUS Varian 600 ? 2 AMX Bruker 500 ? # _pdbx_nmr_refine.entry_id 1EMQ _pdbx_nmr_refine.method ;An initial model of quadruplex was generated on a IRIS workastation.Energy minimization by steepest descent followed by conjugate gradients methods was done using AMBER force field. Conformational search for the cquadruplex was performed by simulated annealing-reastarined molecular dynamics using AMBER forcefield. Relaxation matrix refinement was performed. ; _pdbx_nmr_refine.details ;A total of 234 NOEs constarint. 20 hydrogen bonds constraints. 8 convergant structure after IRMA refinement. R1 factor = 0.31-0.33. r.m.s.d.s from average structure 0.2-0.4. Nil violation exceeding 0.2 A. ; _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_details.entry_id 1EMQ _pdbx_nmr_details.text '0-70 C Temperature dependent one dimensional spectra. pH dependent spectra.' # _pdbx_nmr_ensemble.entry_id 1EMQ _pdbx_nmr_ensemble.conformers_calculated_total_number 8 _pdbx_nmr_ensemble.conformers_submitted_total_number 1 _pdbx_nmr_ensemble.conformer_selection_criteria 'structures with the lowest energy' _pdbx_nmr_ensemble.average_constraints_per_residue ? _pdbx_nmr_ensemble.average_constraint_violations_per_residue ? _pdbx_nmr_ensemble.maximum_distance_constraint_violation ? _pdbx_nmr_ensemble.average_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_upper_distance_constraint_violation ? _pdbx_nmr_ensemble.maximum_lower_distance_constraint_violation ? _pdbx_nmr_ensemble.distance_constraint_violation_method ? _pdbx_nmr_ensemble.maximum_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.average_torsion_angle_constraint_violation ? _pdbx_nmr_ensemble.torsion_angle_constraint_violation_method ? # _pdbx_nmr_representative.entry_id 1EMQ _pdbx_nmr_representative.conformer_id 1 _pdbx_nmr_representative.selection_criteria 'minimized average structure' # loop_ _pdbx_nmr_software.classification _pdbx_nmr_software.name _pdbx_nmr_software.version _pdbx_nmr_software.authors _pdbx_nmr_software.ordinal processing Felix 230 MSI 1 collection VNMR 6.1 Varian 2 'structure solution' Discover 3.1 MSI 3 refinement IRMA 2.3 MSI 4 # _exptl.entry_id 1EMQ _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1EMQ _struct.title 'NMR OBSERVATION OF T-TETRADS IN A PARALLEL STRANDED DNA QUADRUPLEX FORMED BY SACCHAROMYCES CEREVISIAE TELOMERE REPEATS' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details 'minimized average' # _struct_keywords.entry_id 1EMQ _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'T-tetrad, G-quadruplex, Telomere, Yeast, Saccharomyces cerevisiae, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 1 ? D N N 1 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DT 1 O4 ? ? ? 1_555 B DT 1 N3 ? ? A DT 101 B DT 201 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog2 hydrog ? ? A DT 1 N3 ? ? ? 1_555 C DT 1 O4 ? ? A DT 101 C DT 401 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog3 hydrog ? ? A DG 2 N7 ? ? ? 1_555 B DG 2 N2 ? ? A DG 102 B DG 202 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog4 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DG 2 N1 ? ? A DG 102 B DG 202 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog5 hydrog ? ? A DG 2 N1 ? ? ? 1_555 C DG 2 O6 ? ? A DG 102 C DG 402 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog6 hydrog ? ? A DG 2 N2 ? ? ? 1_555 C DG 2 N7 ? ? A DG 102 C DG 402 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog7 hydrog ? ? A DG 3 N7 ? ? ? 1_555 B DG 3 N2 ? ? A DG 103 B DG 203 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog8 hydrog ? ? A DG 3 O6 ? ? ? 1_555 B DG 3 N1 ? ? A DG 103 B DG 203 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog9 hydrog ? ? A DG 3 N1 ? ? ? 1_555 C DG 3 O6 ? ? A DG 103 C DG 403 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog10 hydrog ? ? A DG 3 N2 ? ? ? 1_555 C DG 3 N7 ? ? A DG 103 C DG 403 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog11 hydrog ? ? A DT 4 O4 ? ? ? 1_555 B DT 4 N3 ? ? A DT 104 B DT 204 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog12 hydrog ? ? A DT 4 N3 ? ? ? 1_555 C DT 4 O4 ? ? A DT 104 C DT 404 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog13 hydrog ? ? A DG 5 N7 ? ? ? 1_555 B DG 5 N2 ? ? A DG 105 B DG 205 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog14 hydrog ? ? A DG 5 O6 ? ? ? 1_555 B DG 5 N1 ? ? A DG 105 B DG 205 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog15 hydrog ? ? A DG 5 N1 ? ? ? 1_555 C DG 5 O6 ? ? A DG 105 C DG 405 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog16 hydrog ? ? A DG 5 N2 ? ? ? 1_555 C DG 5 N7 ? ? A DG 105 C DG 405 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog17 hydrog ? ? A DG 6 N7 ? ? ? 1_555 B DG 6 N2 ? ? A DG 106 B DG 206 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog18 hydrog ? ? A DG 6 O6 ? ? ? 1_555 B DG 6 N1 ? ? A DG 106 B DG 206 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog19 hydrog ? ? A DG 6 N1 ? ? ? 1_555 C DG 6 O6 ? ? A DG 106 C DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog20 hydrog ? ? A DG 6 N2 ? ? ? 1_555 C DG 6 N7 ? ? A DG 106 C DG 406 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog21 hydrog ? ? A DC 7 N4 ? ? ? 1_555 B DC 7 N3 ? ? A DC 107 B DC 207 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog22 hydrog ? ? A DC 7 N3 ? ? ? 1_555 C DC 7 N4 ? ? A DC 107 C DC 407 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog23 hydrog ? ? B DT 1 O4 ? ? ? 1_555 D DT 1 N3 ? ? B DT 201 D DT 301 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog24 hydrog ? ? B DG 2 N7 ? ? ? 1_555 D DG 2 N2 ? ? B DG 202 D DG 302 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog25 hydrog ? ? B DG 2 O6 ? ? ? 1_555 D DG 2 N1 ? ? B DG 202 D DG 302 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog26 hydrog ? ? B DG 3 N7 ? ? ? 1_555 D DG 3 N2 ? ? B DG 203 D DG 303 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog27 hydrog ? ? B DG 3 O6 ? ? ? 1_555 D DG 3 N1 ? ? B DG 203 D DG 303 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog28 hydrog ? ? B DT 4 O4 ? ? ? 1_555 D DT 4 N3 ? ? B DT 204 D DT 304 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog29 hydrog ? ? B DG 5 N7 ? ? ? 1_555 D DG 5 N2 ? ? B DG 205 D DG 305 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog30 hydrog ? ? B DG 5 O6 ? ? ? 1_555 D DG 5 N1 ? ? B DG 205 D DG 305 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog31 hydrog ? ? B DG 6 N7 ? ? ? 1_555 D DG 6 N2 ? ? B DG 206 D DG 306 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog32 hydrog ? ? B DG 6 O6 ? ? ? 1_555 D DG 6 N1 ? ? B DG 206 D DG 306 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog33 hydrog ? ? B DC 7 N4 ? ? ? 1_555 D DC 7 N3 ? ? B DC 207 D DC 307 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? hydrog34 hydrog ? ? C DT 1 N3 ? ? ? 1_555 D DT 1 O4 ? ? C DT 401 D DT 301 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog35 hydrog ? ? C DG 2 N1 ? ? ? 1_555 D DG 2 O6 ? ? C DG 402 D DG 302 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog36 hydrog ? ? C DG 2 N2 ? ? ? 1_555 D DG 2 N7 ? ? C DG 402 D DG 302 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog37 hydrog ? ? C DG 3 N1 ? ? ? 1_555 D DG 3 O6 ? ? C DG 403 D DG 303 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog38 hydrog ? ? C DG 3 N2 ? ? ? 1_555 D DG 3 N7 ? ? C DG 403 D DG 303 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog39 hydrog ? ? C DT 4 N3 ? ? ? 1_555 D DT 4 O4 ? ? C DT 404 D DT 304 1_555 ? ? ? ? ? ? 'DT-DT MISPAIR' ? ? ? hydrog40 hydrog ? ? C DG 5 N1 ? ? ? 1_555 D DG 5 O6 ? ? C DG 405 D DG 305 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog41 hydrog ? ? C DG 5 N2 ? ? ? 1_555 D DG 5 N7 ? ? C DG 405 D DG 305 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog42 hydrog ? ? C DG 6 N1 ? ? ? 1_555 D DG 6 O6 ? ? C DG 406 D DG 306 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog43 hydrog ? ? C DG 6 N2 ? ? ? 1_555 D DG 6 N7 ? ? C DG 406 D DG 306 1_555 ? ? ? ? ? ? TYPE_6_PAIR ? ? ? hydrog44 hydrog ? ? C DC 7 N4 ? ? ? 1_555 D DG 6 O6 ? ? C DC 407 D DG 306 1_555 ? ? ? ? ? ? 'DC-DG PAIR' ? ? ? hydrog45 hydrog ? ? C DC 7 N3 ? ? ? 1_555 D DC 7 N4 ? ? C DC 407 D DC 307 1_555 ? ? ? ? ? ? 'DC-DC MISPAIR' ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1EMQ _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EMQ _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DT 1 101 101 DT T A . n A 1 2 DG 2 102 102 DG G A . n A 1 3 DG 3 103 103 DG G A . n A 1 4 DT 4 104 104 DT T A . n A 1 5 DG 5 105 105 DG G A . n A 1 6 DG 6 106 106 DG G A . n A 1 7 DC 7 107 107 DC C A . n B 1 1 DT 1 201 201 DT T B . n B 1 2 DG 2 202 202 DG G B . n B 1 3 DG 3 203 203 DG G B . n B 1 4 DT 4 204 204 DT T B . n B 1 5 DG 5 205 205 DG G B . n B 1 6 DG 6 206 206 DG G B . n B 1 7 DC 7 207 207 DC C B . n C 1 1 DT 1 401 401 DT T C . n C 1 2 DG 2 402 402 DG G C . n C 1 3 DG 3 403 403 DG G C . n C 1 4 DT 4 404 404 DT T C . n C 1 5 DG 5 405 405 DG G C . n C 1 6 DG 6 406 406 DG G C . n C 1 7 DC 7 407 407 DC C C . n D 1 1 DT 1 301 301 DT T D . n D 1 2 DG 2 302 302 DG G D . n D 1 3 DG 3 303 303 DG G D . n D 1 4 DT 4 304 304 DT T D . n D 1 5 DG 5 305 305 DG G D . n D 1 6 DG 6 306 306 DG G D . n D 1 7 DC 7 307 307 DC C D . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-04-04 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-16 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_nmr_software 3 4 'Structure model' pdbx_struct_assembly 4 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_nmr_software.name' # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DT 101 ? ? "C1'" A DT 101 ? ? N1 A DT 101 ? ? 111.76 108.30 3.46 0.30 N 2 1 C6 A DT 101 ? ? C5 A DT 101 ? ? C7 A DT 101 ? ? 118.23 122.90 -4.67 0.60 N 3 1 "O4'" A DT 104 ? ? "C1'" A DT 104 ? ? "C2'" A DT 104 ? ? 100.47 105.90 -5.43 0.80 N 4 1 C6 A DT 104 ? ? C5 A DT 104 ? ? C7 A DT 104 ? ? 117.96 122.90 -4.94 0.60 N 5 1 "O4'" A DG 106 ? ? "C1'" A DG 106 ? ? N9 A DG 106 ? ? 110.59 108.30 2.29 0.30 N 6 1 N3 A DG 106 ? ? C2 A DG 106 ? ? N2 A DG 106 ? ? 114.98 119.90 -4.92 0.70 N 7 1 N3 A DC 107 ? ? C4 A DC 107 ? ? N4 A DC 107 ? ? 112.62 118.00 -5.38 0.70 N 8 1 "O4'" B DT 201 ? ? "C1'" B DT 201 ? ? N1 B DT 201 ? ? 112.08 108.30 3.78 0.30 N 9 1 C6 B DT 201 ? ? C5 B DT 201 ? ? C7 B DT 201 ? ? 118.28 122.90 -4.62 0.60 N 10 1 "O4'" B DT 204 ? ? "C1'" B DT 204 ? ? "C2'" B DT 204 ? ? 100.61 105.90 -5.29 0.80 N 11 1 C6 B DT 204 ? ? C5 B DT 204 ? ? C7 B DT 204 ? ? 118.27 122.90 -4.63 0.60 N 12 1 "O4'" B DG 206 ? ? "C1'" B DG 206 ? ? N9 B DG 206 ? ? 110.17 108.30 1.87 0.30 N 13 1 N3 B DC 207 ? ? C4 B DC 207 ? ? N4 B DC 207 ? ? 113.05 118.00 -4.95 0.70 N 14 1 "O4'" C DT 401 ? ? "C1'" C DT 401 ? ? N1 C DT 401 ? ? 111.25 108.30 2.95 0.30 N 15 1 N3 C DT 401 ? ? C2 C DT 401 ? ? O2 C DT 401 ? ? 118.66 122.30 -3.64 0.60 N 16 1 C6 C DT 401 ? ? C5 C DT 401 ? ? C7 C DT 401 ? ? 118.26 122.90 -4.64 0.60 N 17 1 "O4'" C DT 404 ? ? "C1'" C DT 404 ? ? "C2'" C DT 404 ? ? 100.28 105.90 -5.62 0.80 N 18 1 "O4'" C DT 404 ? ? "C1'" C DT 404 ? ? N1 C DT 404 ? ? 110.21 108.30 1.91 0.30 N 19 1 N1 C DT 404 ? ? C2 C DT 404 ? ? N3 C DT 404 ? ? 118.21 114.60 3.61 0.60 N 20 1 C6 C DT 404 ? ? C5 C DT 404 ? ? C7 C DT 404 ? ? 117.72 122.90 -5.18 0.60 N 21 1 "O4'" C DG 406 ? ? "C1'" C DG 406 ? ? N9 C DG 406 ? ? 111.06 108.30 2.76 0.30 N 22 1 N3 C DC 407 ? ? C4 C DC 407 ? ? N4 C DC 407 ? ? 113.51 118.00 -4.49 0.70 N 23 1 "O4'" D DT 301 ? ? "C1'" D DT 301 ? ? N1 D DT 301 ? ? 111.46 108.30 3.16 0.30 N 24 1 C6 D DT 301 ? ? C5 D DT 301 ? ? C7 D DT 301 ? ? 117.96 122.90 -4.94 0.60 N 25 1 "O4'" D DT 304 ? ? "C1'" D DT 304 ? ? "C2'" D DT 304 ? ? 100.24 105.90 -5.66 0.80 N 26 1 C6 D DT 304 ? ? C5 D DT 304 ? ? C7 D DT 304 ? ? 117.93 122.90 -4.97 0.60 N 27 1 "O4'" D DG 306 ? ? "C1'" D DG 306 ? ? N9 D DG 306 ? ? 110.89 108.30 2.59 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DG A 102 ? ? 0.089 'SIDE CHAIN' 2 1 DT A 104 ? ? 0.060 'SIDE CHAIN' 3 1 DC A 107 ? ? 0.076 'SIDE CHAIN' 4 1 DG B 202 ? ? 0.090 'SIDE CHAIN' 5 1 DT B 204 ? ? 0.078 'SIDE CHAIN' 6 1 DC B 207 ? ? 0.091 'SIDE CHAIN' 7 1 DG C 402 ? ? 0.132 'SIDE CHAIN' 8 1 DG C 406 ? ? 0.052 'SIDE CHAIN' 9 1 DC C 407 ? ? 0.138 'SIDE CHAIN' 10 1 DG D 302 ? ? 0.087 'SIDE CHAIN' 11 1 DT D 304 ? ? 0.069 'SIDE CHAIN' # _ndb_struct_conf_na.entry_id 1EMQ _ndb_struct_conf_na.feature 'triple helix' #