data_1EN9 # _entry.id 1EN9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.389 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1EN9 pdb_00001en9 10.2210/pdb1en9/pdb NDB BD0035 ? ? RCSB RCSB010744 ? ? WWPDB D_1000010744 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-09-25 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 5 'Structure model' 1 4 2024-04-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 5 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site 7 5 'Structure model' pdbx_initial_refinement_model # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_alt_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_symmetry' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_auth_seq_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_alt_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr2_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 10 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_alt_id' 11 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_symmetry' 12 4 'Structure model' '_pdbx_struct_conn_angle.value' 13 4 'Structure model' '_struct_conn.pdbx_dist_value' 14 4 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 15 4 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 16 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 19 4 'Structure model' '_struct_conn.ptnr2_symmetry' 20 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 21 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 22 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.entry_id 1EN9 _pdbx_database_status.status_code REL _pdbx_database_status.recvd_initial_deposition_date 2000-03-20 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB BD0033 . unspecified NDB BD0034 . unspecified NDB BD0036 . unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Chiu, T.K.' 1 'Dickerson, R.E.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary '1 A crystal structures of B-DNA reveal sequence-specific binding and groove-specific bending of DNA by magnesium and calcium.' J.Mol.Biol. 301 915 945 2000 JMOBAK UK 0022-2836 0070 ? 10966796 10.1006/jmbi.2000.4012 1 'Absence of minor groove monovalent cations in the crosslinked dodecamer CGCGAATTCGCG' J.Mol.Biol. 292 589 608 1999 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1999.3075 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Chiu, T.K.' 1 ? primary 'Dickerson, R.E.' 2 ? 1 'Chiu, T.K.' 3 ? 1 'Kaczor-Grzeskowiak, M.' 4 ? 1 'Dickerson, R.E.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*CP*AP*GP*CP*GP*CP*TP*GP*G)-3') ; 3045.992 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 6 ? ? ? ? 3 water nat water 18.015 79 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DC)(DA)(DG)(DC)(DG)(DC)(DT)(DG)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CCAGCGCTGG _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DC n 1 3 DA n 1 4 DG n 1 5 DC n 1 6 DG n 1 7 DC n 1 8 DT n 1 9 DG n 1 10 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DA 3 3 3 DA A A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DG 6 6 6 DG G A . n A 1 7 DC 7 7 7 DC C A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DG 9 9 9 DG G A . n A 1 10 DG 10 10 10 DG G A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 111 111 MG MO3 A . C 2 MG 1 116 116 MG MO4 A . D 2 MG 1 112 112 MG MO5 A . E 2 MG 1 113 113 MG MO6 A . F 2 MG 1 114 114 MG MO6 A . G 2 MG 1 115 115 MG MO6 A . H 3 HOH 1 201 201 HOH HOH A . H 3 HOH 2 202 202 HOH HOH A . H 3 HOH 3 203 203 HOH HOH A . H 3 HOH 4 204 204 HOH HOH A . H 3 HOH 5 206 206 HOH HOH A . H 3 HOH 6 207 207 HOH HOH A . H 3 HOH 7 208 208 HOH HOH A . H 3 HOH 8 209 209 HOH HOH A . H 3 HOH 9 210 210 HOH HOH A . H 3 HOH 10 211 211 HOH HOH A . H 3 HOH 11 212 212 HOH HOH A . H 3 HOH 12 213 213 HOH HOH A . H 3 HOH 13 214 214 HOH HOH A . H 3 HOH 14 215 215 HOH HOH A . H 3 HOH 15 216 216 HOH HOH A . H 3 HOH 16 217 217 HOH HOH A . H 3 HOH 17 218 218 HOH HOH A . H 3 HOH 18 219 219 HOH HOH A . H 3 HOH 19 220 220 HOH HOH A . H 3 HOH 20 221 221 HOH HOH A . H 3 HOH 21 222 222 HOH HOH A . H 3 HOH 22 224 224 HOH HOH A . H 3 HOH 23 225 225 HOH HOH A . H 3 HOH 24 226 226 HOH HOH A . H 3 HOH 25 227 227 HOH HOH A . H 3 HOH 26 228 228 HOH HOH A . H 3 HOH 27 232 232 HOH HOH A . H 3 HOH 28 235 235 HOH HOH A . H 3 HOH 29 237 237 HOH HOH A . H 3 HOH 30 239 239 HOH HOH A . H 3 HOH 31 240 240 HOH HOH A . H 3 HOH 32 241 241 HOH HOH A . H 3 HOH 33 242 242 HOH HOH A . H 3 HOH 34 243 243 HOH HOH A . H 3 HOH 35 245 245 HOH HOH A . H 3 HOH 36 250 250 HOH HOH A . H 3 HOH 37 251 251 HOH HOH A . H 3 HOH 38 252 252 HOH HOH A . H 3 HOH 39 255 255 HOH HOH A . H 3 HOH 40 256 256 HOH HOH A . H 3 HOH 41 257 257 HOH HOH A . H 3 HOH 42 1114 1114 HOH HOH A . H 3 HOH 43 1116 1116 HOH HOH A . H 3 HOH 44 1228 1228 HOH HOH A . H 3 HOH 45 1233 1233 HOH HOH A . H 3 HOH 46 1239 1239 HOH HOH A . H 3 HOH 47 1244 1244 HOH HOH A . H 3 HOH 48 1250 1250 HOH HOH A . H 3 HOH 49 1277 1277 HOH HOH A . H 3 HOH 50 1278 111 HOH MO3 A . H 3 HOH 51 1279 111 HOH MO3 A . H 3 HOH 52 1280 111 HOH MO3 A . H 3 HOH 53 1281 116 HOH MO4 A . H 3 HOH 54 1282 116 HOH MO4 A . H 3 HOH 55 1283 116 HOH MO4 A . H 3 HOH 56 1284 116 HOH MO4 A . H 3 HOH 57 1285 112 HOH MO5 A . H 3 HOH 58 1286 112 HOH MO5 A . H 3 HOH 59 1287 112 HOH MO5 A . H 3 HOH 60 1288 112 HOH MO5 A . H 3 HOH 61 1289 112 HOH MO5 A . H 3 HOH 62 1290 113 HOH MO6 A . H 3 HOH 63 1291 113 HOH MO6 A . H 3 HOH 64 1292 113 HOH MO6 A . H 3 HOH 65 1293 113 HOH MO6 A . H 3 HOH 66 1294 113 HOH MO6 A . H 3 HOH 67 1295 113 HOH MO6 A . H 3 HOH 68 1296 114 HOH MO6 A . H 3 HOH 69 1297 114 HOH MO6 A . H 3 HOH 70 1298 114 HOH MO6 A . H 3 HOH 71 1299 114 HOH MO6 A . H 3 HOH 72 1300 114 HOH MO6 A . H 3 HOH 73 1301 114 HOH MO6 A . H 3 HOH 74 1302 115 HOH MO6 A . H 3 HOH 75 1303 115 HOH MO6 A . H 3 HOH 76 1304 115 HOH MO6 A . H 3 HOH 77 1305 115 HOH MO6 A . H 3 HOH 78 1306 115 HOH MO6 A . H 3 HOH 79 1307 115 HOH MO6 A . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 X-PLOR phasing . ? 5 # _cell.entry_id 1EN9 _cell.length_a 32.243 _cell.length_b 25.352 _cell.length_c 34.190 _cell.angle_alpha 90.00 _cell.angle_beta 117.17 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EN9 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 5 # _exptl.entry_id 1EN9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.88 _exptl_crystal.density_Matthews 2.06 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 275.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;initial concentration in droplet: 0.17 mM dna, 31.40 mM magnesium acetate 0.28 mM streptonigrin, 10-15% MPD, 30% final MPD concentration in reservoir. Solutions were unbuffered, VAPOR DIFFUSION, SITTING DROP, temperature 275.0K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'magnesium acetate' ? ? ? 1 2 1 streptonigrin ? ? ? 1 3 1 MPD ? ? ? 1 4 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-11-19 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9500 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X8C' _diffrn_source.pdbx_wavelength 0.9500 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X8C _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EN9 _reflns.observed_criterion_sigma_I -1.0 _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 8.0 _reflns.d_resolution_high 0.985 _reflns.number_obs 13087 _reflns.number_all 13087 _reflns.percent_possible_obs 93.3 _reflns.pdbx_Rmerge_I_obs 0.0310000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 32.8 _reflns.B_iso_Wilson_estimate 5.82 _reflns.pdbx_redundancy 4.87 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 0.985 _reflns_shell.d_res_low 1.016 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 89.5 _reflns_shell.Rmerge_I_obs 0.1220000 _reflns_shell.meanI_over_sigI_obs 6.9 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all 1253 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EN9 _refine.ls_number_reflns_obs 13087 _refine.ls_number_reflns_all 13087 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 8.0 _refine.ls_d_res_high 0.985 _refine.ls_percent_reflns_obs 93.3 _refine.ls_R_factor_obs 0.1405000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1405000 _refine.ls_R_factor_R_free 0.1509000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5 _refine.ls_number_reflns_R_free 654 _refine.ls_number_parameters 16139 _refine.ls_number_restraints 5024 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'SHELX swat option' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;REFINEMENT STARTED IN X-PLOR 3.843 WITH DNA MODEL FROM BDJ019. AFTER ALL DATA HAS BEEN ADDED AND REFINED BY SIMULATED ANNEALING IN X-PLOR 3.843, REFINEMENT CONTINUED BY CONJUGATE GRADIENT LEAST-SQUARES IN SHELXL-97. THE TOP 50 MOST DISAGREEABLE REFLECTIONS WERE REJECTED TOWARDS THE LATTER STAGES OF REFINEMENT BUT THESE ARE STILL INCLUDED IN THE RELEASED DATA. ; _refine.pdbx_starting_model BDJ019 _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Parkinson et al.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EN9 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 9 _refine_analyze.occupancy_sum_hydrogen 113 _refine_analyze.occupancy_sum_non_hydrogen 271.4 _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 385 _refine_hist.pdbx_number_atoms_ligand 48 _refine_hist.number_atoms_solvent 51 _refine_hist.number_atoms_total 484 _refine_hist.d_res_high 0.985 _refine_hist.d_res_low 8.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.018 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.053 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.041 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.006 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.023 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.039 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1EN9 _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff ? _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff ? _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.1380000 _pdbx_refine.free_R_factor_4sig_cutoff 0.1490000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 632 _pdbx_refine.number_reflns_obs_4sig_cutoff 12512 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1EN9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1EN9 _struct.title '1A CRYSTAL STRUCTURES OF B-DNA REVEAL SEQUENCE-SPECIFIC BINDING AND GROOVE-SPECIFIC BENDING OF DNA BY MAGNESIUM AND CALCIUM.' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EN9 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'divalent cations, DNA sequence-specific binding, shelxdna, B-DNA, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 3 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1EN9 _struct_ref.pdbx_db_accession 1EN9 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EN9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 10 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1EN9 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 10 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 10 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 16.6307462069 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 30.4173245290 # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 111 A HOH 1278 1_555 ? ? ? ? ? ? ? 2.135 ? ? metalc2 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 111 A HOH 1278 2_655 ? ? ? ? ? ? ? 2.135 ? ? metalc3 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 111 A HOH 1279 1_555 ? ? ? ? ? ? ? 2.086 ? ? metalc4 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 111 A HOH 1279 2_655 ? ? ? ? ? ? ? 2.086 ? ? metalc5 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 111 A HOH 1280 1_555 ? ? ? ? ? ? ? 2.062 ? ? metalc6 metalc ? ? B MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 111 A HOH 1280 2_655 ? ? ? ? ? ? ? 2.061 ? ? metalc7 metalc ? ? D MG . MG C ? ? 1_555 H HOH . O C ? A MG 112 A HOH 1285 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc8 metalc ? ? D MG . MG D ? ? 1_555 H HOH . O D ? A MG 112 A HOH 1285 1_555 ? ? ? ? ? ? ? 2.071 ? ? metalc9 metalc ? ? D MG . MG E ? ? 1_555 H HOH . O E ? A MG 112 A HOH 1285 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc10 metalc ? ? D MG . MG C ? ? 1_555 H HOH . O C ? A MG 112 A HOH 1286 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc11 metalc ? ? D MG . MG D ? ? 1_555 H HOH . O D ? A MG 112 A HOH 1286 1_555 ? ? ? ? ? ? ? 2.094 ? ? metalc12 metalc ? ? D MG . MG E ? ? 1_555 H HOH . O E ? A MG 112 A HOH 1286 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc13 metalc ? ? D MG . MG C ? ? 1_555 H HOH . O C ? A MG 112 A HOH 1287 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc14 metalc ? ? D MG . MG D ? ? 1_555 H HOH . O D ? A MG 112 A HOH 1287 1_555 ? ? ? ? ? ? ? 2.104 ? ? metalc15 metalc ? ? D MG . MG E ? ? 1_555 H HOH . O E ? A MG 112 A HOH 1287 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc16 metalc ? ? D MG . MG C ? ? 1_555 H HOH . O C ? A MG 112 A HOH 1288 1_555 ? ? ? ? ? ? ? 2.093 ? ? metalc17 metalc ? ? D MG . MG D ? ? 1_555 H HOH . O D ? A MG 112 A HOH 1288 1_555 ? ? ? ? ? ? ? 2.085 ? ? metalc18 metalc ? ? D MG . MG E ? ? 1_555 H HOH . O E ? A MG 112 A HOH 1288 1_555 ? ? ? ? ? ? ? 2.098 ? ? metalc19 metalc ? ? D MG . MG C ? ? 1_555 H HOH . O C ? A MG 112 A HOH 1289 1_555 ? ? ? ? ? ? ? 2.066 ? ? metalc20 metalc ? ? D MG . MG D ? ? 1_555 H HOH . O D ? A MG 112 A HOH 1289 1_555 ? ? ? ? ? ? ? 2.063 ? ? metalc21 metalc ? ? D MG . MG E ? ? 1_555 H HOH . O E ? A MG 112 A HOH 1289 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc22 metalc ? ? E MG . MG C ? ? 1_555 H HOH . O C ? A MG 113 A HOH 1290 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc23 metalc ? ? E MG . MG C ? ? 1_555 H HOH . O C ? A MG 113 A HOH 1291 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc24 metalc ? ? E MG . MG C ? ? 1_555 H HOH . O C ? A MG 113 A HOH 1292 1_555 ? ? ? ? ? ? ? 2.077 ? ? metalc25 metalc ? ? E MG . MG C ? ? 1_555 H HOH . O C ? A MG 113 A HOH 1293 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc26 metalc ? ? E MG . MG C ? ? 1_555 H HOH . O C ? A MG 113 A HOH 1294 1_555 ? ? ? ? ? ? ? 2.108 ? ? metalc27 metalc ? ? E MG . MG C ? ? 1_555 H HOH . O C ? A MG 113 A HOH 1295 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc28 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 114 A HOH 1296 1_555 ? ? ? ? ? ? ? 2.080 ? ? metalc29 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 114 A HOH 1297 1_555 ? ? ? ? ? ? ? 2.058 ? ? metalc30 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 114 A HOH 1298 1_555 ? ? ? ? ? ? ? 2.091 ? ? metalc31 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 114 A HOH 1299 1_555 ? ? ? ? ? ? ? 2.065 ? ? metalc32 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 114 A HOH 1300 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc33 metalc ? ? F MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 114 A HOH 1301 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc34 metalc ? ? G MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 115 A HOH 1302 1_555 ? ? ? ? ? ? ? 2.081 ? ? metalc35 metalc ? ? G MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 115 A HOH 1303 1_555 ? ? ? ? ? ? ? 2.087 ? ? metalc36 metalc ? ? G MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 115 A HOH 1304 1_555 ? ? ? ? ? ? ? 2.079 ? ? metalc37 metalc ? ? G MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 115 A HOH 1305 1_555 ? ? ? ? ? ? ? 2.076 ? ? metalc38 metalc ? ? G MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 115 A HOH 1306 1_555 ? ? ? ? ? ? ? 2.090 ? ? metalc39 metalc ? ? G MG . MG ? ? ? 1_555 H HOH . O ? ? A MG 115 A HOH 1307 1_555 ? ? ? ? ? ? ? 2.082 ? ? metalc40 metalc ? ? C MG . MG D ? ? 1_555 H HOH . O D ? A MG 116 A HOH 1281 1_555 ? ? ? ? ? ? ? 2.068 ? ? metalc41 metalc ? ? C MG . MG D ? ? 1_555 H HOH . O D ? A MG 116 A HOH 1282 1_555 ? ? ? ? ? ? ? 2.047 ? ? metalc42 metalc ? ? C MG . MG D ? ? 1_555 H HOH . O D ? A MG 116 A HOH 1283 1_555 ? ? ? ? ? ? ? 2.075 ? ? metalc43 metalc ? ? C MG . MG D ? ? 1_555 H HOH . O D ? A MG 116 A HOH 1284 1_555 ? ? ? ? ? ? ? 2.085 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 A DG 10 N1 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 A DG 10 O6 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 A DG 10 N2 ? ? A DC 1 A DG 10 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 A DG 9 N1 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 A DG 9 O6 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 A DG 9 N2 ? ? A DC 2 A DG 9 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DA 3 N1 ? ? ? 1_555 A DT 8 N3 ? ? A DA 3 A DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DA 3 N6 ? ? ? 1_555 A DT 8 O4 ? ? A DA 3 A DT 8 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DG 4 N1 ? ? ? 1_555 A DC 7 N3 ? ? A DG 4 A DC 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N2 ? ? ? 1_555 A DC 7 O2 ? ? A DG 4 A DC 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 O6 ? ? ? 1_555 A DC 7 N4 ? ? A DG 4 A DC 7 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N3 ? ? ? 1_555 A DG 6 N1 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DC 5 N4 ? ? ? 1_555 A DG 6 O6 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 O2 ? ? ? 1_555 A DG 6 N2 ? ? A DC 5 A DG 6 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DG 6 N1 ? ? ? 1_555 A DC 5 N3 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DG 6 N2 ? ? ? 1_555 A DC 5 O2 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DG 6 O6 ? ? ? 1_555 A DC 5 N4 ? ? A DG 6 A DC 5 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DC 7 N3 ? ? ? 1_555 A DG 4 N1 ? ? A DC 7 A DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DC 7 N4 ? ? ? 1_555 A DG 4 O6 ? ? A DC 7 A DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DC 7 O2 ? ? ? 1_555 A DG 4 N2 ? ? A DC 7 A DG 4 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DT 8 N3 ? ? ? 1_555 A DA 3 N1 ? ? A DT 8 A DA 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DT 8 O4 ? ? ? 1_555 A DA 3 N6 ? ? A DT 8 A DA 3 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 9 N1 ? ? ? 1_555 A DC 2 N3 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 9 N2 ? ? ? 1_555 A DC 2 O2 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 9 O6 ? ? ? 1_555 A DC 2 N4 ? ? A DG 9 A DC 2 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 N1 ? ? ? 1_555 A DC 1 N3 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DG 10 N2 ? ? ? 1_555 A DC 1 O2 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DG 10 O6 ? ? ? 1_555 A DC 1 N4 ? ? A DG 10 A DC 1 2_656 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? H HOH . ? A HOH 1278 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1278 ? 2_655 98.4 ? 2 O ? H HOH . ? A HOH 1278 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1279 ? 1_555 85.4 ? 3 O ? H HOH . ? A HOH 1278 ? 2_655 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1279 ? 1_555 176.2 ? 4 O ? H HOH . ? A HOH 1278 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1279 ? 2_655 176.2 ? 5 O ? H HOH . ? A HOH 1278 ? 2_655 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1279 ? 2_655 85.4 ? 6 O ? H HOH . ? A HOH 1279 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1279 ? 2_655 90.8 ? 7 O ? H HOH . ? A HOH 1278 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 1_555 91.0 ? 8 O ? H HOH . ? A HOH 1278 ? 2_655 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 1_555 88.0 ? 9 O ? H HOH . ? A HOH 1279 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 1_555 91.6 ? 10 O ? H HOH . ? A HOH 1279 ? 2_655 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 1_555 89.5 ? 11 O ? H HOH . ? A HOH 1278 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 2_655 88.0 ? 12 O ? H HOH . ? A HOH 1278 ? 2_655 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 2_655 91.0 ? 13 O ? H HOH . ? A HOH 1279 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 2_655 89.5 ? 14 O ? H HOH . ? A HOH 1279 ? 2_655 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 2_655 91.6 ? 15 O ? H HOH . ? A HOH 1280 ? 1_555 MG ? B MG . ? A MG 111 ? 1_555 O ? H HOH . ? A HOH 1280 ? 2_655 178.4 ? 16 O C H HOH . ? A HOH 1285 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1286 ? 1_555 91.6 ? 17 O C H HOH . ? A HOH 1285 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1287 ? 1_555 88.7 ? 18 O C H HOH . ? A HOH 1286 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1287 ? 1_555 179.6 ? 19 O C H HOH . ? A HOH 1285 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1288 ? 1_555 89.2 ? 20 O C H HOH . ? A HOH 1286 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1288 ? 1_555 89.8 ? 21 O C H HOH . ? A HOH 1287 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1288 ? 1_555 90.5 ? 22 O C H HOH . ? A HOH 1285 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1289 ? 1_555 96.7 ? 23 O C H HOH . ? A HOH 1286 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1289 ? 1_555 89.5 ? 24 O C H HOH . ? A HOH 1287 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1289 ? 1_555 90.2 ? 25 O C H HOH . ? A HOH 1288 ? 1_555 MG C D MG . ? A MG 112 ? 1_555 O C H HOH . ? A HOH 1289 ? 1_555 174.1 ? 26 O D H HOH . ? A HOH 1285 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1286 ? 1_555 177.1 ? 27 O D H HOH . ? A HOH 1285 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1287 ? 1_555 93.0 ? 28 O D H HOH . ? A HOH 1286 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1287 ? 1_555 85.0 ? 29 O D H HOH . ? A HOH 1285 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1288 ? 1_555 88.3 ? 30 O D H HOH . ? A HOH 1286 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1288 ? 1_555 89.5 ? 31 O D H HOH . ? A HOH 1287 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1288 ? 1_555 89.2 ? 32 O D H HOH . ? A HOH 1285 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1289 ? 1_555 92.4 ? 33 O D H HOH . ? A HOH 1286 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1289 ? 1_555 89.8 ? 34 O D H HOH . ? A HOH 1287 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1289 ? 1_555 89.4 ? 35 O D H HOH . ? A HOH 1288 ? 1_555 MG D D MG . ? A MG 112 ? 1_555 O D H HOH . ? A HOH 1289 ? 1_555 178.5 ? 36 O E H HOH . ? A HOH 1285 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1286 ? 1_555 90.5 ? 37 O E H HOH . ? A HOH 1285 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1287 ? 1_555 89.4 ? 38 O E H HOH . ? A HOH 1286 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1287 ? 1_555 179.8 ? 39 O E H HOH . ? A HOH 1285 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1288 ? 1_555 88.2 ? 40 O E H HOH . ? A HOH 1286 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1288 ? 1_555 89.6 ? 41 O E H HOH . ? A HOH 1287 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1288 ? 1_555 90.5 ? 42 O E H HOH . ? A HOH 1285 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1289 ? 1_555 96.6 ? 43 O E H HOH . ? A HOH 1286 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1289 ? 1_555 88.5 ? 44 O E H HOH . ? A HOH 1287 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1289 ? 1_555 91.3 ? 45 O E H HOH . ? A HOH 1288 ? 1_555 MG E D MG . ? A MG 112 ? 1_555 O E H HOH . ? A HOH 1289 ? 1_555 174.9 ? 46 O C H HOH . ? A HOH 1290 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1291 ? 1_555 177.3 ? 47 O C H HOH . ? A HOH 1290 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1292 ? 1_555 89.1 ? 48 O C H HOH . ? A HOH 1291 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1292 ? 1_555 93.4 ? 49 O C H HOH . ? A HOH 1290 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1293 ? 1_555 89.9 ? 50 O C H HOH . ? A HOH 1291 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1293 ? 1_555 87.7 ? 51 O C H HOH . ? A HOH 1292 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1293 ? 1_555 173.8 ? 52 O C H HOH . ? A HOH 1290 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1294 ? 1_555 93.0 ? 53 O C H HOH . ? A HOH 1291 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1294 ? 1_555 88.4 ? 54 O C H HOH . ? A HOH 1292 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1294 ? 1_555 82.5 ? 55 O C H HOH . ? A HOH 1293 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1294 ? 1_555 91.4 ? 56 O C H HOH . ? A HOH 1290 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1295 ? 1_555 88.5 ? 57 O C H HOH . ? A HOH 1291 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1295 ? 1_555 90.3 ? 58 O C H HOH . ? A HOH 1292 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1295 ? 1_555 94.4 ? 59 O C H HOH . ? A HOH 1293 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1295 ? 1_555 91.7 ? 60 O C H HOH . ? A HOH 1294 ? 1_555 MG C E MG . ? A MG 113 ? 1_555 O C H HOH . ? A HOH 1295 ? 1_555 176.6 ? 61 O ? H HOH . ? A HOH 1296 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1297 ? 1_555 177.6 ? 62 O ? H HOH . ? A HOH 1296 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1298 ? 1_555 90.8 ? 63 O ? H HOH . ? A HOH 1297 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1298 ? 1_555 91.3 ? 64 O ? H HOH . ? A HOH 1296 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1299 ? 1_555 88.3 ? 65 O ? H HOH . ? A HOH 1297 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1299 ? 1_555 89.6 ? 66 O ? H HOH . ? A HOH 1298 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1299 ? 1_555 178.0 ? 67 O ? H HOH . ? A HOH 1296 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1300 ? 1_555 90.7 ? 68 O ? H HOH . ? A HOH 1297 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1300 ? 1_555 90.4 ? 69 O ? H HOH . ? A HOH 1298 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1300 ? 1_555 87.5 ? 70 O ? H HOH . ? A HOH 1299 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1300 ? 1_555 90.7 ? 71 O ? H HOH . ? A HOH 1296 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1301 ? 1_555 88.1 ? 72 O ? H HOH . ? A HOH 1297 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1301 ? 1_555 90.9 ? 73 O ? H HOH . ? A HOH 1298 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1301 ? 1_555 88.4 ? 74 O ? H HOH . ? A HOH 1299 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1301 ? 1_555 93.3 ? 75 O ? H HOH . ? A HOH 1300 ? 1_555 MG ? F MG . ? A MG 114 ? 1_555 O ? H HOH . ? A HOH 1301 ? 1_555 175.7 ? 76 O ? H HOH . ? A HOH 1302 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1303 ? 1_555 178.6 ? 77 O ? H HOH . ? A HOH 1302 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1304 ? 1_555 91.3 ? 78 O ? H HOH . ? A HOH 1303 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1304 ? 1_555 88.2 ? 79 O ? H HOH . ? A HOH 1302 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1305 ? 1_555 91.2 ? 80 O ? H HOH . ? A HOH 1303 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1305 ? 1_555 89.3 ? 81 O ? H HOH . ? A HOH 1304 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1305 ? 1_555 177.5 ? 82 O ? H HOH . ? A HOH 1302 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1306 ? 1_555 88.9 ? 83 O ? H HOH . ? A HOH 1303 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1306 ? 1_555 89.7 ? 84 O ? H HOH . ? A HOH 1304 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1306 ? 1_555 89.1 ? 85 O ? H HOH . ? A HOH 1305 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1306 ? 1_555 90.5 ? 86 O ? H HOH . ? A HOH 1302 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1307 ? 1_555 89.7 ? 87 O ? H HOH . ? A HOH 1303 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1307 ? 1_555 91.6 ? 88 O ? H HOH . ? A HOH 1304 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1307 ? 1_555 92.5 ? 89 O ? H HOH . ? A HOH 1305 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1307 ? 1_555 87.9 ? 90 O ? H HOH . ? A HOH 1306 ? 1_555 MG ? G MG . ? A MG 115 ? 1_555 O ? H HOH . ? A HOH 1307 ? 1_555 177.9 ? 91 O D H HOH . ? A HOH 1281 ? 1_555 MG D C MG . ? A MG 116 ? 1_555 O D H HOH . ? A HOH 1282 ? 1_555 95.4 ? 92 O D H HOH . ? A HOH 1281 ? 1_555 MG D C MG . ? A MG 116 ? 1_555 O D H HOH . ? A HOH 1283 ? 1_555 90.5 ? 93 O D H HOH . ? A HOH 1282 ? 1_555 MG D C MG . ? A MG 116 ? 1_555 O D H HOH . ? A HOH 1283 ? 1_555 92.3 ? 94 O D H HOH . ? A HOH 1281 ? 1_555 MG D C MG . ? A MG 116 ? 1_555 O D H HOH . ? A HOH 1284 ? 1_555 90.7 ? 95 O D H HOH . ? A HOH 1282 ? 1_555 MG D C MG . ? A MG 116 ? 1_555 O D H HOH . ? A HOH 1284 ? 1_555 90.4 ? 96 O D H HOH . ? A HOH 1283 ? 1_555 MG D C MG . ? A MG 116 ? 1_555 O D H HOH . ? A HOH 1284 ? 1_555 177.0 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 111 ? 6 'BINDING SITE FOR RESIDUE MG A 111' AC2 Software A MG 116 ? 6 'BINDING SITE FOR RESIDUE MG A 116' AC3 Software A MG 112 ? 6 'BINDING SITE FOR RESIDUE MG A 112' AC4 Software A MG 113 ? 6 'BINDING SITE FOR RESIDUE MG A 113' AC5 Software A MG 114 ? 6 'BINDING SITE FOR RESIDUE MG A 114' AC6 Software A MG 115 ? 6 'BINDING SITE FOR RESIDUE MG A 115' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 HOH H . ? HOH A 1278 . ? 2_655 ? 2 AC1 6 HOH H . ? HOH A 1278 . ? 1_555 ? 3 AC1 6 HOH H . ? HOH A 1279 . ? 1_555 ? 4 AC1 6 HOH H . ? HOH A 1279 . ? 2_655 ? 5 AC1 6 HOH H . ? HOH A 1280 . ? 2_655 ? 6 AC1 6 HOH H . ? HOH A 1280 . ? 1_555 ? 7 AC2 6 HOH H . ? HOH A 1116 . ? 1_555 ? 8 AC2 6 HOH H . ? HOH A 1281 . ? 1_555 ? 9 AC2 6 HOH H . ? HOH A 1282 . ? 1_555 ? 10 AC2 6 HOH H . ? HOH A 1283 . ? 1_555 ? 11 AC2 6 HOH H . ? HOH A 1284 . ? 1_555 ? 12 AC2 6 HOH H . ? HOH A 1291 . ? 1_556 ? 13 AC3 6 HOH H . ? HOH A 1114 . ? 1_555 ? 14 AC3 6 HOH H . ? HOH A 1285 . ? 1_555 ? 15 AC3 6 HOH H . ? HOH A 1286 . ? 1_555 ? 16 AC3 6 HOH H . ? HOH A 1287 . ? 1_555 ? 17 AC3 6 HOH H . ? HOH A 1288 . ? 1_555 ? 18 AC3 6 HOH H . ? HOH A 1289 . ? 1_555 ? 19 AC4 6 HOH H . ? HOH A 1290 . ? 1_555 ? 20 AC4 6 HOH H . ? HOH A 1291 . ? 1_555 ? 21 AC4 6 HOH H . ? HOH A 1292 . ? 1_555 ? 22 AC4 6 HOH H . ? HOH A 1293 . ? 1_555 ? 23 AC4 6 HOH H . ? HOH A 1294 . ? 1_555 ? 24 AC4 6 HOH H . ? HOH A 1295 . ? 1_555 ? 25 AC5 6 HOH H . ? HOH A 1296 . ? 1_555 ? 26 AC5 6 HOH H . ? HOH A 1297 . ? 1_555 ? 27 AC5 6 HOH H . ? HOH A 1298 . ? 1_555 ? 28 AC5 6 HOH H . ? HOH A 1299 . ? 1_555 ? 29 AC5 6 HOH H . ? HOH A 1300 . ? 1_555 ? 30 AC5 6 HOH H . ? HOH A 1301 . ? 1_555 ? 31 AC6 6 HOH H . ? HOH A 1302 . ? 1_555 ? 32 AC6 6 HOH H . ? HOH A 1303 . ? 1_555 ? 33 AC6 6 HOH H . ? HOH A 1304 . ? 1_555 ? 34 AC6 6 HOH H . ? HOH A 1305 . ? 1_555 ? 35 AC6 6 HOH H . ? HOH A 1306 . ? 1_555 ? 36 AC6 6 HOH H . ? HOH A 1307 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 "O3'" A DG 4 ? ? P A DC 5 ? ? 1.524 1.607 -0.083 0.012 Y 2 1 "O4'" A DG 6 ? A "C1'" A DG 6 ? A 1.525 1.420 0.105 0.011 N 3 1 C5 A DT 8 ? ? C7 A DT 8 ? ? 1.532 1.496 0.036 0.006 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C3'" A DC 2 ? B "C2'" A DC 2 ? ? "C1'" A DC 2 ? ? 97.43 102.40 -4.97 0.80 N 2 1 "O5'" A DA 3 ? B "C5'" A DA 3 ? B "C4'" A DA 3 ? B 104.38 109.40 -5.02 0.80 N 3 1 "C5'" A DA 3 ? A "C4'" A DA 3 ? A "C3'" A DA 3 ? ? 123.51 115.70 7.81 1.20 N 4 1 "O5'" A DG 6 ? ? "C5'" A DG 6 ? B "C4'" A DG 6 ? B 103.57 109.40 -5.83 0.80 N 5 1 P A DG 6 ? ? "O5'" A DG 6 ? ? "C5'" A DG 6 ? C 130.97 120.90 10.07 1.60 N 6 1 "C5'" A DG 6 ? A "C4'" A DG 6 ? A "O4'" A DG 6 ? A 116.59 109.80 6.79 1.10 N 7 1 N9 A DG 6 ? ? "C1'" A DG 6 ? A "C2'" A DG 6 ? A 128.13 114.30 13.83 1.40 N 8 1 "O4'" A DG 6 ? A "C1'" A DG 6 ? A N9 A DG 6 ? ? 95.63 108.00 -12.37 0.70 N 9 1 C4 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 114.01 110.80 3.21 0.40 N 10 1 N9 A DG 6 ? ? C4 A DG 6 ? ? C5 A DG 6 ? ? 102.72 105.40 -2.68 0.40 N 11 1 C6 A DG 6 ? ? C5 A DG 6 ? ? N7 A DG 6 ? ? 126.27 130.40 -4.13 0.60 N 12 1 N1 A DG 6 ? ? C6 A DG 6 ? ? O6 A DG 6 ? ? 124.43 119.90 4.53 0.60 N 13 1 "C3'" A DG 6 ? B "O3'" A DG 6 ? B P A DC 7 ? B 130.77 119.70 11.07 1.20 Y 14 1 "O3'" A DG 6 ? C P A DC 7 ? C OP1 A DC 7 ? C 123.70 110.50 13.20 1.10 Y 15 1 OP1 A DC 7 ? C P A DC 7 ? C OP2 A DC 7 ? C 128.88 119.60 9.28 1.50 N 16 1 "O5'" A DC 7 ? C P A DC 7 ? C OP2 A DC 7 ? C 68.46 105.70 -37.24 0.90 N 17 1 "O5'" A DC 7 ? A "C5'" A DC 7 ? A "C4'" A DC 7 ? A 103.53 109.40 -5.87 0.80 N 18 1 P A DC 7 ? C "O5'" A DC 7 ? C "C5'" A DC 7 ? C 108.76 120.90 -12.14 1.60 N 19 1 "O4'" A DC 7 ? ? "C4'" A DC 7 ? A "C3'" A DC 7 ? ? 101.53 104.50 -2.97 0.40 N 20 1 "C1'" A DC 7 ? ? "O4'" A DC 7 ? ? "C4'" A DC 7 ? A 103.14 110.10 -6.96 1.00 N 21 1 "C5'" A DG 9 ? ? "C4'" A DG 9 ? ? "C3'" A DG 9 ? A 123.16 115.70 7.46 1.20 N 22 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 110.57 108.30 2.27 0.30 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 DA A 3 ? A 0.073 'SIDE CHAIN' 2 1 DC A 7 ? A 0.065 'SIDE CHAIN' 3 1 DG A 9 ? ? 0.071 'SIDE CHAIN' # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A MG 111 ? B MG . 2 1 A HOH 228 ? H HOH . # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 # _ndb_struct_conf_na.entry_id 1EN9 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 A DG 10 2_656 0.200 -0.109 0.147 -8.229 -12.065 0.408 1 A_DC1:DG10_A A 1 ? A 10 ? 19 1 1 A DC 2 1_555 A DG 9 2_656 0.238 -0.151 0.004 -1.257 -8.207 -0.804 2 A_DC2:DG9_A A 2 ? A 9 ? 19 1 1 A DA 3 1_555 A DT 8 2_656 0.034 -0.136 0.046 1.348 -6.641 1.245 3 A_DA3:DT8_A A 3 ? A 8 ? 20 1 1 A DG 4 1_555 A DC 7 2_656 -0.156 -0.087 0.183 8.349 -7.152 -1.007 4 A_DG4:DC7_A A 4 ? A 7 ? 19 1 1 A DC 5 1_555 A DG 6 2_656 0.338 -0.185 0.013 11.736 -16.742 -1.736 5 A_DC5:DG6_A A 5 ? A 6 ? 19 1 1 A DG 6 1_555 A DC 5 2_656 -0.338 -0.185 0.013 -11.736 -16.742 -1.736 6 A_DG6:DC5_A A 6 ? A 5 ? 19 1 1 A DC 7 1_555 A DG 4 2_656 0.156 -0.087 0.183 -8.349 -7.152 -1.007 7 A_DC7:DG4_A A 7 ? A 4 ? 19 1 1 A DT 8 1_555 A DA 3 2_656 -0.034 -0.136 0.046 -1.348 -6.641 1.245 8 A_DT8:DA3_A A 8 ? A 3 ? 20 1 1 A DG 9 1_555 A DC 2 2_656 -0.238 -0.151 0.004 1.257 -8.207 -0.804 9 A_DG9:DC2_A A 9 ? A 2 ? 19 1 1 A DG 10 1_555 A DC 1 2_656 -0.200 -0.109 0.147 8.229 -12.065 0.408 10 A_DG10:DC1_A A 10 ? A 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 A DG 10 2_656 A DC 2 1_555 A DG 9 2_656 -0.337 0.621 3.186 3.545 7.081 27.428 -0.342 1.486 3.175 14.553 -7.286 28.527 1 AA_DC1DC2:DG9DG10_AA A 1 ? A 10 ? A 2 ? A 9 ? 1 A DC 2 1_555 A DG 9 2_656 A DA 3 1_555 A DT 8 2_656 0.136 2.865 3.213 0.040 -6.032 50.943 3.698 -0.154 2.879 -6.984 -0.046 51.275 2 AA_DC2DA3:DT8DG9_AA A 2 ? A 9 ? A 3 ? A 8 ? 1 A DA 3 1_555 A DT 8 2_656 A DG 4 1_555 A DC 7 2_656 0.502 0.736 3.222 -2.646 8.758 20.938 -1.341 -2.235 3.180 22.749 6.873 22.829 3 AA_DA3DG4:DC7DT8_AA A 3 ? A 8 ? A 4 ? A 7 ? 1 A DG 4 1_555 A DC 7 2_656 A DC 5 1_555 A DG 6 2_656 -0.670 0.661 3.332 0.161 -3.838 38.228 1.487 1.039 3.250 -5.843 -0.245 38.413 4 AA_DG4DC5:DG6DC7_AA A 4 ? A 7 ? A 5 ? A 6 ? 1 A DC 5 1_555 A DG 6 2_656 A DG 6 1_555 A DC 5 2_656 0.000 -0.113 3.731 0.000 8.616 41.898 -1.138 0.000 3.639 11.898 0.000 42.736 5 AA_DC5DG6:DC5DG6_AA A 5 ? A 6 ? A 6 ? A 5 ? 1 A DG 6 1_555 A DC 5 2_656 A DC 7 1_555 A DG 4 2_656 0.670 0.661 3.332 -0.161 -3.838 38.228 1.487 -1.039 3.250 -5.843 0.245 38.413 6 AA_DG6DC7:DG4DC5_AA A 6 ? A 5 ? A 7 ? A 4 ? 1 A DC 7 1_555 A DG 4 2_656 A DT 8 1_555 A DA 3 2_656 -0.502 0.736 3.222 2.646 8.758 20.938 -1.341 2.235 3.180 22.749 -6.873 22.829 7 AA_DC7DT8:DA3DG4_AA A 7 ? A 4 ? A 8 ? A 3 ? 1 A DT 8 1_555 A DA 3 2_656 A DG 9 1_555 A DC 2 2_656 -0.136 2.865 3.213 -0.040 -6.032 50.943 3.698 0.154 2.879 -6.984 0.046 51.275 8 AA_DT8DG9:DC2DA3_AA A 8 ? A 3 ? A 9 ? A 2 ? 1 A DG 9 1_555 A DC 2 2_656 A DG 10 1_555 A DC 1 2_656 0.337 0.621 3.186 -3.545 7.081 27.428 -0.342 -1.486 3.175 14.553 7.286 28.527 9 AA_DG9DG10:DC1DC2_AA A 9 ? A 2 ? A 10 ? A 1 ? # _pdbx_initial_refinement_model.accession_code 5DNB _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.details BDJ019 # _atom_sites.entry_id 1EN9 _atom_sites.fract_transf_matrix[1][1] 0.031014 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.015919 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.039445 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.032876 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C H MG N O P # loop_