HEADER TRANSFERASE 22-MAR-00 1EOG TITLE CRYSTAL STRUCTURE OF PI CLASS GLUTATHIONE TRANSFERASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLUTATHIONE S-TRANSFERASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.18; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_ORGAN: LIVER; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: XL-1 BLUE KEYWDS GLUTATHIONE TRANSFERASE, HELIX CAPPING MUTANT (S149A), TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR J.ROSSJOHN,W.J.MCKINSTRY,A.J.OAKLEY,M.W.PARKER,G.STENBERG, AUTHOR 2 B.MANNERVIK,B.DRAGANI,R.COCCO,A.ACETO REVDAT 6 07-FEB-24 1EOG 1 REMARK REVDAT 5 03-NOV-21 1EOG 1 SEQADV REVDAT 4 31-JAN-18 1EOG 1 REMARK REVDAT 3 24-FEB-09 1EOG 1 VERSN REVDAT 2 24-APR-02 1EOG 1 REMARK REVDAT 1 18-OCT-00 1EOG 0 JRNL AUTH J.ROSSJOHN,W.J.MCKINSTRY,A.J.OAKLEY,M.W.PARKER,G.STENBERG, JRNL AUTH 2 B.MANNERVIK,B.DRAGANI,R.COCCO,A.ACETO JRNL TITL STRUCTURES OF THERMOLABILE MUTANTS OF HUMAN GLUTATHIONE JRNL TITL 2 TRANSFERASE P1-1. JRNL REF J.MOL.BIOL. V. 302 295 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10970734 JRNL DOI 10.1006/JMBI.2000.4054 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.4 REMARK 3 NUMBER OF REFLECTIONS : 23250 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.238 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 2167 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3260 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 117 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -8.22200 REMARK 3 B22 (A**2) : 4.20300 REMARK 3 B33 (A**2) : 4.01900 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.90400 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EOG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-MAR-00. REMARK 100 THE DEPOSITION ID IS D_1000010767. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 23250 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.10 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% AMMONIUM SULFATE, PH 6.5, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 20K, TEMPERATURE 293.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 39.93500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 45.50500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 39.93500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 45.50500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 17850 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -14.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 64 112.02 86.39 REMARK 500 ASN A 110 69.47 -153.90 REMARK 500 THR A 141 -115.47 -121.57 REMARK 500 GLN B 64 111.73 85.12 REMARK 500 ASN B 110 74.49 -153.18 REMARK 500 THR B 141 -112.65 -119.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 9GSS RELATED DB: PDB REMARK 900 WILD TYPE GST REMARK 900 RELATED ID: 1EOH RELATED DB: PDB REMARK 900 D152A MUTANT OF GST DBREF 1EOG A 2 209 UNP P09211 GSTP1_HUMAN 3 210 DBREF 1EOG B 2 209 UNP P09211 GSTP1_HUMAN 3 210 SEQADV 1EOG ALA A 149 UNP P09211 SER 150 ENGINEERED MUTATION SEQADV 1EOG ALA B 149 UNP P09211 SER 150 ENGINEERED MUTATION SEQRES 1 A 208 PRO TYR THR VAL VAL TYR PHE PRO VAL ARG GLY ARG CYS SEQRES 2 A 208 ALA ALA LEU ARG MET LEU LEU ALA ASP GLN GLY GLN SER SEQRES 3 A 208 TRP LYS GLU GLU VAL VAL THR VAL GLU THR TRP GLN GLU SEQRES 4 A 208 GLY SER LEU LYS ALA SER CYS LEU TYR GLY GLN LEU PRO SEQRES 5 A 208 LYS PHE GLN ASP GLY ASP LEU THR LEU TYR GLN SER ASN SEQRES 6 A 208 THR ILE LEU ARG HIS LEU GLY ARG THR LEU GLY LEU TYR SEQRES 7 A 208 GLY LYS ASP GLN GLN GLU ALA ALA LEU VAL ASP MET VAL SEQRES 8 A 208 ASN ASP GLY VAL GLU ASP LEU ARG CYS LYS TYR ILE SER SEQRES 9 A 208 LEU ILE TYR THR ASN TYR GLU ALA GLY LYS ASP ASP TYR SEQRES 10 A 208 VAL LYS ALA LEU PRO GLY GLN LEU LYS PRO PHE GLU THR SEQRES 11 A 208 LEU LEU SER GLN ASN GLN GLY GLY LYS THR PHE ILE VAL SEQRES 12 A 208 GLY ASP GLN ILE ALA PHE ALA ASP TYR ASN LEU LEU ASP SEQRES 13 A 208 LEU LEU LEU ILE HIS GLU VAL LEU ALA PRO GLY CYS LEU SEQRES 14 A 208 ASP ALA PHE PRO LEU LEU SER ALA TYR VAL GLY ARG LEU SEQRES 15 A 208 SER ALA ARG PRO LYS LEU LYS ALA PHE LEU ALA SER PRO SEQRES 16 A 208 GLU TYR VAL ASN LEU PRO ILE ASN GLY ASN GLY LYS GLN SEQRES 1 B 208 PRO TYR THR VAL VAL TYR PHE PRO VAL ARG GLY ARG CYS SEQRES 2 B 208 ALA ALA LEU ARG MET LEU LEU ALA ASP GLN GLY GLN SER SEQRES 3 B 208 TRP LYS GLU GLU VAL VAL THR VAL GLU THR TRP GLN GLU SEQRES 4 B 208 GLY SER LEU LYS ALA SER CYS LEU TYR GLY GLN LEU PRO SEQRES 5 B 208 LYS PHE GLN ASP GLY ASP LEU THR LEU TYR GLN SER ASN SEQRES 6 B 208 THR ILE LEU ARG HIS LEU GLY ARG THR LEU GLY LEU TYR SEQRES 7 B 208 GLY LYS ASP GLN GLN GLU ALA ALA LEU VAL ASP MET VAL SEQRES 8 B 208 ASN ASP GLY VAL GLU ASP LEU ARG CYS LYS TYR ILE SER SEQRES 9 B 208 LEU ILE TYR THR ASN TYR GLU ALA GLY LYS ASP ASP TYR SEQRES 10 B 208 VAL LYS ALA LEU PRO GLY GLN LEU LYS PRO PHE GLU THR SEQRES 11 B 208 LEU LEU SER GLN ASN GLN GLY GLY LYS THR PHE ILE VAL SEQRES 12 B 208 GLY ASP GLN ILE ALA PHE ALA ASP TYR ASN LEU LEU ASP SEQRES 13 B 208 LEU LEU LEU ILE HIS GLU VAL LEU ALA PRO GLY CYS LEU SEQRES 14 B 208 ASP ALA PHE PRO LEU LEU SER ALA TYR VAL GLY ARG LEU SEQRES 15 B 208 SER ALA ARG PRO LYS LEU LYS ALA PHE LEU ALA SER PRO SEQRES 16 B 208 GLU TYR VAL ASN LEU PRO ILE ASN GLY ASN GLY LYS GLN FORMUL 3 HOH *117(H2 O) HELIX 1 1 ARG A 11 ARG A 13 5 3 HELIX 2 2 CYS A 14 GLN A 24 1 11 HELIX 3 3 THR A 34 GLN A 39 1 6 HELIX 4 4 GLY A 41 CYS A 47 1 7 HELIX 5 5 GLN A 64 LEU A 76 1 13 HELIX 6 6 ASP A 82 ASN A 110 1 29 HELIX 7 7 ASN A 110 LYS A 115 1 6 HELIX 8 8 GLY A 114 GLN A 135 1 22 HELIX 9 9 ASN A 136 LYS A 140 5 5 HELIX 10 10 ALA A 149 ALA A 166 1 18 HELIX 11 11 PHE A 173 ALA A 185 1 13 HELIX 12 12 ARG A 186 ALA A 194 1 9 HELIX 13 13 SER A 195 ASN A 200 1 6 HELIX 14 14 ARG B 11 ARG B 13 5 3 HELIX 15 15 CYS B 14 GLN B 24 1 11 HELIX 16 16 THR B 34 GLU B 40 1 7 HELIX 17 17 LEU B 43 CYS B 47 5 5 HELIX 18 18 GLN B 64 GLY B 77 1 14 HELIX 19 19 ASP B 82 ASN B 110 1 29 HELIX 20 20 ASN B 110 LYS B 115 1 6 HELIX 21 21 GLY B 114 GLN B 135 1 22 HELIX 22 22 ASN B 136 LYS B 140 5 5 HELIX 23 23 ALA B 149 ALA B 166 1 18 HELIX 24 24 PHE B 173 ALA B 185 1 13 HELIX 25 25 ARG B 186 ALA B 194 1 9 HELIX 26 26 SER B 195 ASN B 200 1 6 SHEET 1 A 4 LYS A 29 VAL A 32 0 SHEET 2 A 4 TYR A 3 TYR A 7 1 O TYR A 3 N LYS A 29 SHEET 3 A 4 LYS A 54 ASP A 57 -1 O LYS A 54 N VAL A 6 SHEET 4 A 4 LEU A 60 TYR A 63 -1 N LEU A 60 O ASP A 57 SHEET 1 B 4 TRP B 28 VAL B 32 0 SHEET 2 B 4 TYR B 3 TYR B 7 1 O TYR B 3 N LYS B 29 SHEET 3 B 4 LYS B 54 ASP B 57 -1 O LYS B 54 N VAL B 6 SHEET 4 B 4 LEU B 60 TYR B 63 -1 N LEU B 60 O ASP B 57 CISPEP 1 LEU A 52 PRO A 53 0 0.47 CISPEP 2 LEU B 52 PRO B 53 0 0.41 CRYST1 79.870 91.010 69.070 90.00 98.78 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012520 0.000000 0.001934 0.00000 SCALE2 0.000000 0.010988 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014650 0.00000