data_1EP0 # _entry.id 1EP0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1EP0 RCSB RCSB010784 WWPDB D_1000010784 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1EPZ 'same protein, with ligand bound' unspecified TargetDB TT3 . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EP0 _pdbx_database_status.recvd_initial_deposition_date 2000-03-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Christendat, D.' 1 'Saridakis, V.' 2 'Bochkarev, A.' 3 'Pai, E.F.' 4 'Arrowsmith, C.H.' 5 'Edwards, A.M.' 6 'Northeast Structural Genomics Consortium (NESG)' 7 # _citation.id primary _citation.title 'Crystal structure of dTDP-4-keto-6-deoxy-D-hexulose 3,5-epimerase from Methanobacterium thermoautotrophicum complexed with dTDP.' _citation.journal_abbrev J.Biol.Chem. _citation.journal_volume 275 _citation.page_first 24608 _citation.page_last 24612 _citation.year 2000 _citation.journal_id_ASTM JBCHA3 _citation.country US _citation.journal_id_ISSN 0021-9258 _citation.journal_id_CSD 0071 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 10827167 _citation.pdbx_database_id_DOI 10.1074/jbc.C000238200 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Christendat, D.' 1 primary 'Saridakis, V.' 2 primary 'Dharamsi, A.' 3 primary 'Bochkarev, A.' 4 primary 'Pai, E.F.' 5 primary 'Arrowsmith, C.H.' 6 primary 'Edwards, A.M.' 7 # _cell.entry_id 1EP0 _cell.length_a 67.720 _cell.length_b 53.131 _cell.length_c 51.667 _cell.angle_alpha 90.00 _cell.angle_beta 96.61 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EP0 _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE' 21702.332 1 5.1.3.13 ? ? ? 2 water nat water 18.015 126 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'DTDP-4-DEHYDRORHAMNOSE 3,5-EPIMERASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MAEFRFIKTSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRG EIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPL EMVDDLIISEKDRNWKPLRENPVYL ; _entity_poly.pdbx_seq_one_letter_code_can ;MAEFRFIKTSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRG EIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPL EMVDDLIISEKDRNWKPLRENPVYL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier TT3 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 ALA n 1 3 GLU n 1 4 PHE n 1 5 ARG n 1 6 PHE n 1 7 ILE n 1 8 LYS n 1 9 THR n 1 10 SER n 1 11 LEU n 1 12 ASP n 1 13 GLY n 1 14 ALA n 1 15 ILE n 1 16 ILE n 1 17 ILE n 1 18 GLU n 1 19 PRO n 1 20 GLU n 1 21 VAL n 1 22 TYR n 1 23 THR n 1 24 ASP n 1 25 GLU n 1 26 ARG n 1 27 GLY n 1 28 TYR n 1 29 PHE n 1 30 MET n 1 31 GLU n 1 32 THR n 1 33 PHE n 1 34 ASN n 1 35 GLU n 1 36 ALA n 1 37 ILE n 1 38 PHE n 1 39 GLN n 1 40 GLU n 1 41 ASN n 1 42 GLY n 1 43 LEU n 1 44 GLU n 1 45 VAL n 1 46 ARG n 1 47 PHE n 1 48 VAL n 1 49 GLN n 1 50 ASP n 1 51 ASN n 1 52 GLU n 1 53 SER n 1 54 MET n 1 55 SER n 1 56 VAL n 1 57 ARG n 1 58 GLY n 1 59 VAL n 1 60 LEU n 1 61 ARG n 1 62 GLY n 1 63 LEU n 1 64 HIS n 1 65 PHE n 1 66 GLN n 1 67 ARG n 1 68 GLU n 1 69 LYS n 1 70 PRO n 1 71 GLN n 1 72 GLY n 1 73 LYS n 1 74 LEU n 1 75 VAL n 1 76 ARG n 1 77 VAL n 1 78 ILE n 1 79 ARG n 1 80 GLY n 1 81 GLU n 1 82 ILE n 1 83 PHE n 1 84 ASP n 1 85 VAL n 1 86 ALA n 1 87 VAL n 1 88 ASP n 1 89 LEU n 1 90 ARG n 1 91 LYS n 1 92 ASN n 1 93 SER n 1 94 ASP n 1 95 THR n 1 96 TYR n 1 97 GLY n 1 98 GLU n 1 99 TRP n 1 100 THR n 1 101 GLY n 1 102 VAL n 1 103 ARG n 1 104 LEU n 1 105 SER n 1 106 ASP n 1 107 GLU n 1 108 ASN n 1 109 ARG n 1 110 ARG n 1 111 GLU n 1 112 PHE n 1 113 PHE n 1 114 ILE n 1 115 PRO n 1 116 GLU n 1 117 GLY n 1 118 PHE n 1 119 ALA n 1 120 HIS n 1 121 GLY n 1 122 PHE n 1 123 LEU n 1 124 ALA n 1 125 LEU n 1 126 SER n 1 127 ASP n 1 128 GLU n 1 129 CYS n 1 130 ILE n 1 131 VAL n 1 132 ASN n 1 133 TYR n 1 134 LYS n 1 135 CYS n 1 136 THR n 1 137 GLU n 1 138 LEU n 1 139 TYR n 1 140 HIS n 1 141 PRO n 1 142 GLU n 1 143 TYR n 1 144 ASP n 1 145 SER n 1 146 GLY n 1 147 ILE n 1 148 PRO n 1 149 TRP n 1 150 ASP n 1 151 ASP n 1 152 PRO n 1 153 ASP n 1 154 ILE n 1 155 GLY n 1 156 ILE n 1 157 ASP n 1 158 TRP n 1 159 PRO n 1 160 LEU n 1 161 GLU n 1 162 MET n 1 163 VAL n 1 164 ASP n 1 165 ASP n 1 166 LEU n 1 167 ILE n 1 168 ILE n 1 169 SER n 1 170 GLU n 1 171 LYS n 1 172 ASP n 1 173 ARG n 1 174 ASN n 1 175 TRP n 1 176 LYS n 1 177 PRO n 1 178 LEU n 1 179 ARG n 1 180 GLU n 1 181 ASN n 1 182 PRO n 1 183 VAL n 1 184 TYR n 1 185 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Methanothermobacter _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Methanothermobacter thermautotrophicus' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 145262 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code O27818_METTH _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession O27818 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MAEFRFIKTSLDGAIIIEPEVYTDERGYFMETFNEAIFQENGLEVRFVQDNESMSVRGVLRGLHFQREKPQGKLVRVIRG EIFDVAVDLRKNSDTYGEWTGVRLSDENRREFFIPEGFAHGFLALSDECIVNYKCTELYHPEYDSGIPWDDPDIGIDWPL EMVDDLIISEKDRNWKPLRENPVYL ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EP0 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 185 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession O27818 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 185 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 185 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1EP0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 42.18 _exptl_crystal.density_Matthews 2.13 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 293.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '10 % Polyethylene glycol 4K, 0.1 M Sodium Acetate , pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 20K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 4' _diffrn_detector.pdbx_collection_date 2000-02-24 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.953733 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 14-BM-D' _diffrn_source.pdbx_wavelength 0.953733 _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 14-BM-D _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EP0 _reflns.observed_criterion_sigma_I 150.7 _reflns.observed_criterion_sigma_F 5592.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.5 _reflns.number_obs 29180 _reflns.number_all 180757 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.039 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 37.3 _reflns.B_iso_Wilson_estimate 13.7 _reflns.pdbx_redundancy 8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.5 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 100 _reflns_shell.Rmerge_I_obs 0.105 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 4 _reflns_shell.number_unique_all 2877 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EP0 _refine.ls_number_reflns_obs 29020 _refine.ls_number_reflns_all 180757 _refine.pdbx_ls_sigma_I 0.00 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 501863.81 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 25.66 _refine.ls_d_res_high 1.50 _refine.ls_percent_reflns_obs 99.2 _refine.ls_R_factor_obs 0.183 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.183 _refine.ls_R_factor_R_free 0.21 _refine.ls_R_factor_R_free_error 0.004 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.1 _refine.ls_number_reflns_R_free 2933 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 13.8 _refine.aniso_B[1][1] 1.37 _refine.aniso_B[2][2] -0.22 _refine.aniso_B[3][3] -1.15 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] -0.19 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.422673 _refine.solvent_model_param_bsol 42.1104 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'Simulated Annealing' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'CNS 0.9' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF 501863.81 _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EP0 _refine_analyze.Luzzati_coordinate_error_obs 0.15 _refine_analyze.Luzzati_sigma_a_obs -0.06 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.18 _refine_analyze.Luzzati_sigma_a_free 0.05 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1518 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 126 _refine_hist.number_atoms_total 1644 _refine_hist.d_res_high 1.50 _refine_hist.d_res_low 25.66 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.8 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 27.1 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.24 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 1.66 1.50 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 2.59 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 2.51 2.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 3.76 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 1.50 _refine_ls_shell.d_res_low 1.59 _refine_ls_shell.number_reflns_R_work 4279 _refine_ls_shell.R_factor_R_work 0.17 _refine_ls_shell.percent_reflns_obs 97.6 _refine_ls_shell.R_factor_R_free 0.197 _refine_ls_shell.R_factor_R_free_error 0.009 _refine_ls_shell.percent_reflns_R_free 10.0 _refine_ls_shell.number_reflns_R_free 474 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 CIS_PEPTIDE.PARAM ? 'X-RAY DIFFRACTION' # _struct.entry_id 1EP0 _struct.title 'HIGH RESOLUTION CRYSTAL STRUCTURE OF DTDP-6-DEOXY-D-XYLO-4-HEXULOSE 3,5-EPIMERASE FROM METHANOBACTERIUM THERMOAUTOTROPHICUM' _struct.pdbx_descriptor 'DTDP-6-DEOXY-D-XYLO-4-HEXULOASE 3,5-EPIMERASE (E.C.5.1.3.13)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EP0 _struct_keywords.pdbx_keywords ISOMERASE _struct_keywords.text ;racemase, dTDP-4-dehydrorhamnose epimerase, Structural Genomics, PSI, Protein Structure Initiative, Northeast Structural Genomics Consortium, NESG, ISOMERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a dimer constructed from Chain A and one symmetry related molecule.' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 34 ? ASN A 41 ? ASN A 34 ASN A 41 1 ? 8 HELX_P HELX_P2 2 HIS A 140 ? GLU A 142 ? HIS A 140 GLU A 142 5 ? 3 HELX_P HELX_P3 3 PRO A 159 ? VAL A 163 ? PRO A 159 VAL A 163 5 ? 5 HELX_P HELX_P4 4 SER A 169 ? ASN A 174 ? SER A 169 ASN A 174 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 62 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 62 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 LEU _struct_mon_prot_cis.pdbx_label_seq_id_2 63 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 LEU _struct_mon_prot_cis.pdbx_auth_seq_id_2 63 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -1.84 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 6 ? B ? 2 ? C ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel C 3 4 ? anti-parallel C 4 5 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 PHE A 4 ? LYS A 8 ? PHE A 4 LYS A 8 A 2 ILE A 15 ? PRO A 19 ? ILE A 15 PRO A 19 A 3 GLU A 111 ? ILE A 114 ? GLU A 111 ILE A 114 A 4 LYS A 73 ? ARG A 79 ? LYS A 73 ARG A 79 A 5 GLU A 128 ? CYS A 135 ? GLU A 128 CYS A 135 A 6 GLN A 49 ? VAL A 56 ? GLN A 49 VAL A 56 B 1 VAL A 21 ? ASP A 24 ? VAL A 21 ASP A 24 B 2 GLY A 27 ? MET A 30 ? GLY A 27 MET A 30 C 1 TRP A 99 ? SER A 105 ? TRP A 99 SER A 105 C 2 GLU A 81 ? ASP A 88 ? GLU A 81 ASP A 88 C 3 PHE A 118 ? ALA A 124 ? PHE A 118 ALA A 124 C 4 LEU A 60 ? GLN A 66 ? LEU A 60 GLN A 66 C 5 ASP A 144 ? GLY A 146 ? ASP A 144 GLY A 146 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N ILE A 7 ? N ILE A 7 O ILE A 16 ? O ILE A 16 A 2 3 N ILE A 17 ? N ILE A 17 O GLU A 111 ? O GLU A 111 A 3 4 N ILE A 114 ? N ILE A 114 O LYS A 73 ? O LYS A 73 A 4 5 O ARG A 79 ? O ARG A 79 N ILE A 130 ? N ILE A 130 A 5 6 N CYS A 135 ? N CYS A 135 O GLN A 49 ? O GLN A 49 B 1 2 N ASP A 24 ? N ASP A 24 O GLY A 27 ? O GLY A 27 C 1 2 O LEU A 104 ? O LEU A 104 N ILE A 82 ? N ILE A 82 C 2 3 N VAL A 87 ? N VAL A 87 O ALA A 119 ? O ALA A 119 C 3 4 O PHE A 122 ? O PHE A 122 N ARG A 61 ? N ARG A 61 C 4 5 O PHE A 65 ? O PHE A 65 N SER A 145 ? N SER A 145 # _database_PDB_matrix.entry_id 1EP0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EP0 _atom_sites.fract_transf_matrix[1][1] 0.014767 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.001712 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018821 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019484 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 1 ? ? ? A . n A 1 2 ALA 2 2 ? ? ? A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 ARG 5 5 5 ARG ARG A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 LYS 8 8 8 LYS LYS A . n A 1 9 THR 9 9 9 THR THR A . n A 1 10 SER 10 10 10 SER SER A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ASP 12 12 12 ASP ASP A . n A 1 13 GLY 13 13 13 GLY GLY A . n A 1 14 ALA 14 14 14 ALA ALA A . n A 1 15 ILE 15 15 15 ILE ILE A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 ILE 17 17 17 ILE ILE A . n A 1 18 GLU 18 18 18 GLU GLU A . n A 1 19 PRO 19 19 19 PRO PRO A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 VAL 21 21 21 VAL VAL A . n A 1 22 TYR 22 22 22 TYR TYR A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 ASP 24 24 24 ASP ASP A . n A 1 25 GLU 25 25 25 GLU GLU A . n A 1 26 ARG 26 26 26 ARG ARG A . n A 1 27 GLY 27 27 27 GLY GLY A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 PHE 29 29 29 PHE PHE A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 GLU 31 31 31 GLU GLU A . n A 1 32 THR 32 32 32 THR THR A . n A 1 33 PHE 33 33 33 PHE PHE A . n A 1 34 ASN 34 34 34 ASN ASN A . n A 1 35 GLU 35 35 35 GLU GLU A . n A 1 36 ALA 36 36 36 ALA ALA A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 PHE 38 38 38 PHE PHE A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLU 40 40 40 GLU GLU A . n A 1 41 ASN 41 41 41 ASN ASN A . n A 1 42 GLY 42 42 42 GLY GLY A . n A 1 43 LEU 43 43 43 LEU LEU A . n A 1 44 GLU 44 44 44 GLU GLU A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 PHE 47 47 47 PHE PHE A . n A 1 48 VAL 48 48 48 VAL VAL A . n A 1 49 GLN 49 49 49 GLN GLN A . n A 1 50 ASP 50 50 50 ASP ASP A . n A 1 51 ASN 51 51 51 ASN ASN A . n A 1 52 GLU 52 52 52 GLU GLU A . n A 1 53 SER 53 53 53 SER SER A . n A 1 54 MET 54 54 54 MET MET A . n A 1 55 SER 55 55 55 SER SER A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ARG 57 57 57 ARG ARG A . n A 1 58 GLY 58 58 58 GLY GLY A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 ARG 61 61 61 ARG ARG A . n A 1 62 GLY 62 62 62 GLY GLY A . n A 1 63 LEU 63 63 63 LEU LEU A . n A 1 64 HIS 64 64 64 HIS HIS A . n A 1 65 PHE 65 65 65 PHE PHE A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 ARG 67 67 67 ARG ARG A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LYS 69 69 69 LYS LYS A . n A 1 70 PRO 70 70 70 PRO PRO A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 GLY 72 72 72 GLY GLY A . n A 1 73 LYS 73 73 73 LYS LYS A . n A 1 74 LEU 74 74 74 LEU LEU A . n A 1 75 VAL 75 75 75 VAL VAL A . n A 1 76 ARG 76 76 76 ARG ARG A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 ARG 79 79 79 ARG ARG A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 GLU 81 81 81 GLU GLU A . n A 1 82 ILE 82 82 82 ILE ILE A . n A 1 83 PHE 83 83 83 PHE PHE A . n A 1 84 ASP 84 84 84 ASP ASP A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 VAL 87 87 87 VAL VAL A . n A 1 88 ASP 88 88 88 ASP ASP A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 ARG 90 90 90 ARG ARG A . n A 1 91 LYS 91 91 91 LYS LYS A . n A 1 92 ASN 92 92 92 ASN ASN A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ASP 94 94 94 ASP ASP A . n A 1 95 THR 95 95 95 THR THR A . n A 1 96 TYR 96 96 96 TYR TYR A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 GLU 98 98 98 GLU GLU A . n A 1 99 TRP 99 99 99 TRP TRP A . n A 1 100 THR 100 100 100 THR THR A . n A 1 101 GLY 101 101 101 GLY GLY A . n A 1 102 VAL 102 102 102 VAL VAL A . n A 1 103 ARG 103 103 103 ARG ARG A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 SER 105 105 105 SER SER A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 GLU 107 107 107 GLU GLU A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ARG 109 109 109 ARG ARG A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 GLU 111 111 111 GLU GLU A . n A 1 112 PHE 112 112 112 PHE PHE A . n A 1 113 PHE 113 113 113 PHE PHE A . n A 1 114 ILE 114 114 114 ILE ILE A . n A 1 115 PRO 115 115 115 PRO PRO A . n A 1 116 GLU 116 116 116 GLU GLU A . n A 1 117 GLY 117 117 117 GLY GLY A . n A 1 118 PHE 118 118 118 PHE PHE A . n A 1 119 ALA 119 119 119 ALA ALA A . n A 1 120 HIS 120 120 120 HIS HIS A . n A 1 121 GLY 121 121 121 GLY GLY A . n A 1 122 PHE 122 122 122 PHE PHE A . n A 1 123 LEU 123 123 123 LEU LEU A . n A 1 124 ALA 124 124 124 ALA ALA A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 SER 126 126 126 SER SER A . n A 1 127 ASP 127 127 127 ASP ASP A . n A 1 128 GLU 128 128 128 GLU GLU A . n A 1 129 CYS 129 129 129 CYS CYS A . n A 1 130 ILE 130 130 130 ILE ILE A . n A 1 131 VAL 131 131 131 VAL VAL A . n A 1 132 ASN 132 132 132 ASN ASN A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 LYS 134 134 134 LYS LYS A . n A 1 135 CYS 135 135 135 CYS CYS A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 LEU 138 138 138 LEU LEU A . n A 1 139 TYR 139 139 139 TYR TYR A . n A 1 140 HIS 140 140 140 HIS HIS A . n A 1 141 PRO 141 141 141 PRO PRO A . n A 1 142 GLU 142 142 142 GLU GLU A . n A 1 143 TYR 143 143 143 TYR TYR A . n A 1 144 ASP 144 144 144 ASP ASP A . n A 1 145 SER 145 145 145 SER SER A . n A 1 146 GLY 146 146 146 GLY GLY A . n A 1 147 ILE 147 147 147 ILE ILE A . n A 1 148 PRO 148 148 148 PRO PRO A . n A 1 149 TRP 149 149 149 TRP TRP A . n A 1 150 ASP 150 150 150 ASP ASP A . n A 1 151 ASP 151 151 151 ASP ASP A . n A 1 152 PRO 152 152 152 PRO PRO A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 ILE 154 154 154 ILE ILE A . n A 1 155 GLY 155 155 155 GLY GLY A . n A 1 156 ILE 156 156 156 ILE ILE A . n A 1 157 ASP 157 157 157 ASP ASP A . n A 1 158 TRP 158 158 158 TRP TRP A . n A 1 159 PRO 159 159 159 PRO PRO A . n A 1 160 LEU 160 160 160 LEU LEU A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 MET 162 162 162 MET MET A . n A 1 163 VAL 163 163 163 VAL VAL A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 ASP 165 165 165 ASP ASP A . n A 1 166 LEU 166 166 166 LEU LEU A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 ILE 168 168 168 ILE ILE A . n A 1 169 SER 169 169 169 SER SER A . n A 1 170 GLU 170 170 170 GLU GLU A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 ASP 172 172 172 ASP ASP A . n A 1 173 ARG 173 173 173 ARG ARG A . n A 1 174 ASN 174 174 174 ASN ASN A . n A 1 175 TRP 175 175 175 TRP TRP A . n A 1 176 LYS 176 176 176 LYS LYS A . n A 1 177 PRO 177 177 177 PRO PRO A . n A 1 178 LEU 178 178 178 LEU LEU A . n A 1 179 ARG 179 179 179 ARG ARG A . n A 1 180 GLU 180 180 180 GLU GLU A . n A 1 181 ASN 181 181 181 ASN ASN A . n A 1 182 PRO 182 182 182 PRO PRO A . n A 1 183 VAL 183 183 183 VAL VAL A . n A 1 184 TYR 184 184 184 TYR TYR A . n A 1 185 LEU 185 185 185 LEU LEU A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name 'PSI, Protein Structure Initiative' _pdbx_SG_project.full_name_of_center 'Northeast Structural Genomics Consortium' _pdbx_SG_project.initial_of_center NESG # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 1001 1001 HOH HOH A . B 2 HOH 2 1002 1002 HOH HOH A . B 2 HOH 3 1003 1003 HOH HOH A . B 2 HOH 4 1004 1004 HOH HOH A . B 2 HOH 5 1005 1005 HOH HOH A . B 2 HOH 6 1006 1006 HOH HOH A . B 2 HOH 7 1007 1007 HOH HOH A . B 2 HOH 8 1008 1008 HOH HOH A . B 2 HOH 9 1009 1009 HOH HOH A . B 2 HOH 10 1010 1010 HOH HOH A . B 2 HOH 11 1011 1011 HOH HOH A . B 2 HOH 12 1012 1012 HOH HOH A . B 2 HOH 13 1013 1013 HOH HOH A . B 2 HOH 14 1014 1014 HOH HOH A . B 2 HOH 15 1015 1015 HOH HOH A . B 2 HOH 16 1016 1016 HOH HOH A . B 2 HOH 17 1017 1017 HOH HOH A . B 2 HOH 18 1018 1018 HOH HOH A . B 2 HOH 19 1019 1019 HOH HOH A . B 2 HOH 20 1020 1020 HOH HOH A . B 2 HOH 21 1021 1021 HOH HOH A . B 2 HOH 22 1022 1022 HOH HOH A . B 2 HOH 23 1023 1023 HOH HOH A . B 2 HOH 24 1024 1024 HOH HOH A . B 2 HOH 25 1025 1025 HOH HOH A . B 2 HOH 26 1026 1026 HOH HOH A . B 2 HOH 27 1027 1027 HOH HOH A . B 2 HOH 28 1028 1028 HOH HOH A . B 2 HOH 29 1029 1029 HOH HOH A . B 2 HOH 30 1030 1030 HOH HOH A . B 2 HOH 31 1031 1031 HOH HOH A . B 2 HOH 32 1032 1032 HOH HOH A . B 2 HOH 33 1033 1033 HOH HOH A . B 2 HOH 34 1034 1034 HOH HOH A . B 2 HOH 35 1035 1035 HOH HOH A . B 2 HOH 36 1036 1036 HOH HOH A . B 2 HOH 37 1037 1037 HOH HOH A . B 2 HOH 38 1038 1038 HOH HOH A . B 2 HOH 39 1039 1039 HOH HOH A . B 2 HOH 40 1040 1040 HOH HOH A . B 2 HOH 41 1041 1041 HOH HOH A . B 2 HOH 42 1042 1042 HOH HOH A . B 2 HOH 43 1043 1043 HOH HOH A . B 2 HOH 44 1044 1044 HOH HOH A . B 2 HOH 45 1045 1045 HOH HOH A . B 2 HOH 46 1046 1046 HOH HOH A . B 2 HOH 47 1047 1047 HOH HOH A . B 2 HOH 48 1048 1048 HOH HOH A . B 2 HOH 49 1049 1049 HOH HOH A . B 2 HOH 50 1050 1050 HOH HOH A . B 2 HOH 51 1051 1051 HOH HOH A . B 2 HOH 52 1052 1052 HOH HOH A . B 2 HOH 53 1053 1053 HOH HOH A . B 2 HOH 54 1054 1054 HOH HOH A . B 2 HOH 55 1055 1055 HOH HOH A . B 2 HOH 56 1056 1056 HOH HOH A . B 2 HOH 57 1057 1057 HOH HOH A . B 2 HOH 58 1058 1058 HOH HOH A . B 2 HOH 59 1059 1059 HOH HOH A . B 2 HOH 60 1060 1060 HOH HOH A . B 2 HOH 61 1061 1061 HOH HOH A . B 2 HOH 62 1062 1062 HOH HOH A . B 2 HOH 63 1063 1063 HOH HOH A . B 2 HOH 64 1065 1065 HOH HOH A . B 2 HOH 65 1066 1066 HOH HOH A . B 2 HOH 66 1067 1067 HOH HOH A . B 2 HOH 67 1068 1068 HOH HOH A . B 2 HOH 68 1069 1069 HOH HOH A . B 2 HOH 69 1070 1070 HOH HOH A . B 2 HOH 70 1071 1071 HOH HOH A . B 2 HOH 71 1072 1072 HOH HOH A . B 2 HOH 72 1073 1073 HOH HOH A . B 2 HOH 73 1074 1074 HOH HOH A . B 2 HOH 74 1075 1075 HOH HOH A . B 2 HOH 75 1076 1076 HOH HOH A . B 2 HOH 76 1077 1077 HOH HOH A . B 2 HOH 77 1078 1078 HOH HOH A . B 2 HOH 78 1079 1079 HOH HOH A . B 2 HOH 79 1080 1080 HOH HOH A . B 2 HOH 80 1081 1081 HOH HOH A . B 2 HOH 81 1082 1082 HOH HOH A . B 2 HOH 82 1083 1083 HOH HOH A . B 2 HOH 83 1084 1084 HOH HOH A . B 2 HOH 84 1085 1085 HOH HOH A . B 2 HOH 85 1086 1086 HOH HOH A . B 2 HOH 86 1087 1087 HOH HOH A . B 2 HOH 87 1088 1088 HOH HOH A . B 2 HOH 88 1089 1089 HOH HOH A . B 2 HOH 89 1090 1090 HOH HOH A . B 2 HOH 90 1091 1091 HOH HOH A . B 2 HOH 91 1092 1092 HOH HOH A . B 2 HOH 92 1093 1093 HOH HOH A . B 2 HOH 93 1094 1094 HOH HOH A . B 2 HOH 94 1095 1095 HOH HOH A . B 2 HOH 95 1096 1096 HOH HOH A . B 2 HOH 96 1097 1097 HOH HOH A . B 2 HOH 97 1098 1098 HOH HOH A . B 2 HOH 98 1099 1099 HOH HOH A . B 2 HOH 99 1100 1100 HOH HOH A . B 2 HOH 100 1101 1101 HOH HOH A . B 2 HOH 101 1102 1102 HOH HOH A . B 2 HOH 102 1103 1103 HOH HOH A . B 2 HOH 103 1104 1104 HOH HOH A . B 2 HOH 104 1105 1105 HOH HOH A . B 2 HOH 105 1106 1106 HOH HOH A . B 2 HOH 106 1107 1107 HOH HOH A . B 2 HOH 107 1108 1108 HOH HOH A . B 2 HOH 108 1110 1110 HOH HOH A . B 2 HOH 109 1111 1111 HOH HOH A . B 2 HOH 110 1112 1112 HOH HOH A . B 2 HOH 111 1113 1113 HOH HOH A . B 2 HOH 112 1114 1114 HOH HOH A . B 2 HOH 113 1115 1115 HOH HOH A . B 2 HOH 114 1116 1116 HOH HOH A . B 2 HOH 115 1117 1117 HOH HOH A . B 2 HOH 116 1118 1118 HOH HOH A . B 2 HOH 117 1119 1119 HOH HOH A . B 2 HOH 118 1120 1120 HOH HOH A . B 2 HOH 119 1121 1121 HOH HOH A . B 2 HOH 120 1122 1122 HOH HOH A . B 2 HOH 121 1123 1123 HOH HOH A . B 2 HOH 122 1124 1124 HOH HOH A . B 2 HOH 123 1125 1125 HOH HOH A . B 2 HOH 124 1126 1126 HOH HOH A . B 2 HOH 125 1127 1127 HOH HOH A . B 2 HOH 126 1163 1163 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_656 -x+1,y,-z+1 -1.0000000000 0.0000000000 0.0000000000 61.7725845050 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 51.3235534422 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-12-13 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 4 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category exptl_crystal_grow # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.pdbx_details' 2 4 'Structure model' '_exptl_crystal_grow.temp' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 PHASES phasing . ? 3 CNS refinement 0.9 ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 43 ? ? -107.72 72.38 2 1 GLU A 68 ? ? 79.12 -57.42 3 1 ARG A 109 ? ? 58.91 15.92 4 1 ASP A 165 ? ? 66.93 126.72 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 1 ? A MET 1 2 1 Y 1 A ALA 2 ? A ALA 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #