HEADER EPIDERMAL GROWTH FACTOR 24-MAR-92 1EPG TITLE THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF MOUSE TITLE 2 EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH SOLUTIONS COMPND MOL_ID: 1; COMPND 2 MOLECULE: EPIDERMAL GROWTH FACTOR; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090 KEYWDS EPIDERMAL GROWTH FACTOR EXPDTA SOLUTION NMR AUTHOR D.KOHDA,F.INAGAKI REVDAT 3 29-NOV-17 1EPG 1 REMARK HELIX REVDAT 2 24-FEB-09 1EPG 1 VERSN REVDAT 1 31-JAN-94 1EPG 0 JRNL AUTH D.KOHDA,F.INAGAKI JRNL TITL THREE-DIMENSIONAL NUCLEAR MAGNETIC RESONANCE STRUCTURES OF JRNL TITL 2 MOUSE EPIDERMAL GROWTH FACTOR IN ACIDIC AND PHYSIOLOGICAL PH JRNL TITL 3 SOLUTIONS. JRNL REF BIOCHEMISTRY V. 31 11928 1992 JRNL REFN ISSN 0006-2960 JRNL PMID 1445923 JRNL DOI 10.1021/BI00162A036 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH D.KOHDA,F.INAGAKI REMARK 1 TITL STRUCTURE OF EPIDERMAL GROWTH FACTOR BOUND TO PERDEUTERATED REMARK 1 TITL 2 DODECYLPHOSPHOCHOLINE MICELLES DETERMINED BY TWO-DIMENSIONAL REMARK 1 TITL 3 NMR AND SIMULATED ANNEALING CALCULATIONS REMARK 1 REF BIOCHEMISTRY V. 31 677 1992 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.KOHDA,T.SAWADA,F.INAGAKI REMARK 1 TITL CHARACTERIZATION OF PH TITRATION SHIFTS FOR ALL THE REMARK 1 TITL 2 NONLABILE PROTON RESONANCES IN A PROTEIN BY TWO-DIMENSIONAL REMARK 1 TITL 3 NMR: THE CASE OF MOUSE EPIDERMAL GROWTH FACTOR REMARK 1 REF BIOCHEMISTRY V. 30 4896 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 1 REFERENCE 3 REMARK 1 AUTH D.KOHDA,N.GO,K.HAYASHI,F.INAGAKI REMARK 1 TITL TERTIARY STRUCTURE OF MOUSE EPIDERMAL GROWTH FACTOR REMARK 1 TITL 2 DETERMINED BY TWO-DIMENSIONAL 1H NMR REMARK 1 REF J.BIOCHEM.(TOKYO) V. 103 741 1988 REMARK 1 REFN ISSN 0021-924X REMARK 1 REFERENCE 4 REMARK 1 AUTH D.KOHDA,C.KODAMA,R.KASE,H.NOMOTO,K.HAYASHI,F.INAGAKI REMARK 1 TITL A COMPARATIVE 1H NMR STUDY OF MOUSE ALPHA(1-53) AND REMARK 1 TITL 2 BETA(2-53) EPIDERMAL GROWTH FACTORS REMARK 1 REF BIOCHEM.INT. V. 16 647 1988 REMARK 1 REFN ISSN 0158-5231 REMARK 1 REFERENCE 5 REMARK 1 AUTH D.KOHDA,F.INAGAKI REMARK 1 TITL COMPLETE SEQUENCE-SPECIFIC 1H NUCLEAR MAGNETIC RESONANCE REMARK 1 TITL 2 ASSIGNMENTS FOR MOUSE EPIDERMAL GROWTH FACTOR REMARK 1 REF J.BIOCHEM.(TOKYO) V. 103 554 1988 REMARK 1 REFN ISSN 0021-924X REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EPG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173112. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : NULL REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : NULL REMARK 210 SAMPLE CONTENTS : NULL REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : NULL REMARK 210 SPECTROMETER FIELD STRENGTH : NULL REMARK 210 SPECTROMETER MODEL : NULL REMARK 210 SPECTROMETER MANUFACTURER : NULL REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : NULL REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : NULL REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : NULL REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 22 CG HIS A 22 ND1 -0.105 REMARK 500 TRP A 50 CG TRP A 50 CD2 -0.103 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP A 49 CD1 - NE1 - CE2 ANGL. DEV. = 5.8 DEGREES REMARK 500 TRP A 49 NE1 - CE2 - CZ2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP A 50 CG - CD1 - NE1 ANGL. DEV. = -7.0 DEGREES REMARK 500 TRP A 50 CD1 - NE1 - CE2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP A 50 NE1 - CE2 - CZ2 ANGL. DEV. = 7.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 SER A 2 -8.77 71.42 REMARK 500 TYR A 3 95.42 41.98 REMARK 500 PRO A 7 123.07 -37.81 REMARK 500 SER A 9 -19.33 -47.04 REMARK 500 TYR A 10 -76.55 -84.78 REMARK 500 ASP A 11 29.97 30.29 REMARK 500 ASN A 16 101.92 34.93 REMARK 500 SER A 25 -80.78 -44.57 REMARK 500 ASP A 27 17.76 50.56 REMARK 500 SER A 28 -167.34 -75.46 REMARK 500 CYS A 33 -146.93 -64.11 REMARK 500 VAL A 34 -163.20 -162.21 REMARK 500 ILE A 35 54.26 -68.05 REMARK 500 SER A 38 -160.53 -161.20 REMARK 500 ASP A 40 -93.42 -46.50 REMARK 500 CYS A 42 32.61 -171.93 REMARK 500 THR A 44 79.10 -103.57 REMARK 500 LEU A 47 73.03 -62.54 REMARK 500 ARG A 48 -93.67 -147.20 REMARK 500 TRP A 49 -88.09 -32.63 REMARK 500 TRP A 50 -18.25 -44.73 REMARK 500 GLU A 51 -90.45 47.81 REMARK 500 LEU A 52 127.18 172.61 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 37 0.09 SIDE CHAIN REMARK 500 ARG A 41 0.32 SIDE CHAIN REMARK 500 ARG A 48 0.31 SIDE CHAIN REMARK 500 ARG A 53 0.21 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EPH RELATED DB: PDB DBREF 1EPG A 1 53 UNP P01132 EGF_MOUSE 977 1029 SEQRES 1 A 53 ASN SER TYR PRO GLY CYS PRO SER SER TYR ASP GLY TYR SEQRES 2 A 53 CYS LEU ASN GLY GLY VAL CYS MET HIS ILE GLU SER LEU SEQRES 3 A 53 ASP SER TYR THR CYS ASN CYS VAL ILE GLY TYR SER GLY SEQRES 4 A 53 ASP ARG CYS GLN THR ARG ASP LEU ARG TRP TRP GLU LEU SEQRES 5 A 53 ARG SHEET 1 SAB 3 SER A 2 PRO A 4 0 SHEET 2 SAB 3 VAL A 19 ILE A 23 -1 O HIS A 22 N TYR A 3 SHEET 3 SAB 3 SER A 28 ASN A 32 -1 O THR A 30 N MET A 21 SHEET 1 SC 2 TYR A 37 SER A 38 0 SHEET 2 SC 2 THR A 44 ARG A 45 -1 O THR A 44 N SER A 38 SSBOND 1 CYS A 6 CYS A 20 1555 1555 2.02 SSBOND 2 CYS A 14 CYS A 31 1555 1555 2.02 SSBOND 3 CYS A 33 CYS A 42 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000