HEADER PROTEIN TRANSPORT 03-APR-00 1EQ6 TITLE 1.9 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF THE SACCHAROMYCES TITLE 2 CEREVISIAE RAN-BINDING PROTEIN MOG1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: MOG1P; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: RESIDUES 30-218; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PMW172 KEYWDS ALPHA-BETA, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR M.STEWART,R.P.BAKER REVDAT 5 07-FEB-24 1EQ6 1 REMARK REVDAT 4 31-JAN-18 1EQ6 1 REMARK REVDAT 3 24-FEB-09 1EQ6 1 VERSN REVDAT 2 01-APR-03 1EQ6 1 JRNL REVDAT 1 27-MAY-00 1EQ6 0 JRNL AUTH M.STEWART,R.P.BAKER JRNL TITL 1.9 A RESOLUTION CRYSTAL STRUCTURE OF THE SACCHAROMYCES JRNL TITL 2 CEREVISIAE RAN-BINDING PROTEIN MOG1P. JRNL REF J.MOL.BIOL. V. 299 213 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10860733 JRNL DOI 10.1006/JMBI.2000.3733 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 18625 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : FREE-R REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.246 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 944 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.50 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 1715 REMARK 3 BIN R VALUE (WORKING SET) : 0.2270 REMARK 3 BIN FREE R VALUE : 0.2680 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 101 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1488 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 124 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 33.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.62900 REMARK 3 B22 (A**2) : -12.17600 REMARK 3 B33 (A**2) : 10.54700 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.23 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 20.0 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.12 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.570 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.32 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.923 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.550 ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.200 ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : 2.490 ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.350 ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: USED MAXIMUM LIKELIHOOD TARGET "MLF" REMARK 4 REMARK 4 1EQ6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-APR-00. REMARK 100 THE DEPOSITION ID IS D_1000010810. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9887 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18625 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.03900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.5 REMARK 200 DATA REDUNDANCY IN SHELL : 3.30 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.14600 REMARK 200 FOR SHELL : 4.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD PLUS SIR REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: 3A PHASES OBTAINED FROM SE-MET MAD PLUS HG SIR REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG4000, GLYCEROL, SODIUM ACETATE, REMARK 280 DTT, PH 6.0, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 18K, REMARK 280 TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.83600 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 56.11700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 25.98150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 56.11700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.83600 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 25.98150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 45 -165.37 -163.47 REMARK 500 ALA A 82 -124.95 -105.94 REMARK 500 ASP A 96 48.75 -67.75 REMARK 500 LEU A 163 78.50 -103.58 REMARK 500 REMARK 500 REMARK: NULL DBREF 1EQ6 A 30 218 UNP P47123 MOG1_YEAST 30 218 SEQRES 1 A 189 SER MET ASN ASN LYS GLU VAL GLU LEU TYR GLY GLY ALA SEQRES 2 A 189 ILE THR THR VAL VAL PRO PRO GLY PHE ILE ASP ALA SER SEQRES 3 A 189 THR LEU ARG GLU VAL PRO ASP THR GLN GLU VAL TYR VAL SEQRES 4 A 189 ASN SER ARG ARG ASP GLU GLU GLU PHE GLU ASP GLY LEU SEQRES 5 A 189 ALA THR ASN GLU SER ILE ILE VAL ASP LEU LEU GLU THR SEQRES 6 A 189 VAL ASP LYS SER ASP LEU LYS GLU ALA TRP GLN PHE HIS SEQRES 7 A 189 VAL GLU ASP LEU THR GLU LEU ASN GLY THR THR LYS TRP SEQRES 8 A 189 GLU ALA LEU GLN GLU ASP THR VAL GLN GLN GLY THR LYS SEQRES 9 A 189 PHE THR GLY LEU VAL MET GLU VAL ALA ASN LYS TRP GLY SEQRES 10 A 189 LYS PRO ASP LEU ALA GLN THR VAL VAL ILE GLY VAL ALA SEQRES 11 A 189 LEU ILE ARG LEU THR GLN PHE ASP THR ASP VAL VAL ILE SEQRES 12 A 189 SER ILE ASN VAL PRO LEU THR LYS GLU GLU ALA SER GLN SEQRES 13 A 189 ALA SER ASN LYS GLU LEU PRO ALA ARG CYS HIS ALA VAL SEQRES 14 A 189 TYR GLN LEU LEU GLN GLU MET VAL ARG LYS PHE HIS VAL SEQRES 15 A 189 VAL ASP THR SER LEU PHE ALA FORMUL 2 HOH *124(H2 O) HELIX 1 1 TYR A 39 GLY A 41 5 3 HELIX 2 2 SER A 55 LEU A 57 5 3 HELIX 3 3 ASP A 99 GLU A 113 1 15 HELIX 4 4 THR A 164 PHE A 166 5 3 HELIX 5 5 THR A 179 SER A 187 1 9 HELIX 6 6 PRO A 192 LYS A 208 1 17 HELIX 7 7 ASP A 213 PHE A 217 5 5 SHEET 1 A 3 LYS A 34 LEU A 38 0 SHEET 2 A 3 ILE A 43 VAL A 47 -1 O ILE A 43 N LEU A 38 SHEET 3 A 3 HIS A 210 VAL A 211 -1 N HIS A 210 O THR A 44 SHEET 1 B 7 PHE A 51 ASP A 53 0 SHEET 2 B 7 GLN A 64 ASN A 69 -1 O VAL A 68 N ILE A 52 SHEET 3 B 7 SER A 86 GLU A 93 -1 N ILE A 87 O TYR A 67 SHEET 4 B 7 THR A 168 PRO A 177 -1 N ASP A 169 O LEU A 92 SHEET 5 B 7 VAL A 154 LEU A 163 -1 N VAL A 155 O VAL A 176 SHEET 6 B 7 LYS A 133 ASN A 143 -1 O PHE A 134 N LEU A 160 SHEET 7 B 7 THR A 117 GLN A 129 -1 N THR A 118 O ALA A 142 CRYST1 39.672 51.963 112.234 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025207 0.000000 0.000000 0.00000 SCALE2 0.000000 0.019244 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008910 0.00000