data_1EQO # _entry.id 1EQO # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1EQO RCSB RCSB010825 WWPDB D_1000010825 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.pdb_id 1Q0N _pdbx_database_PDB_obs_spr.replace_pdb_id 1EQO _pdbx_database_PDB_obs_spr.date 2003-08-26 _pdbx_database_PDB_obs_spr.details ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1HKA '1HKA is the crystal structure of unliganded HPPK from E. coli.' unspecified PDB 1EQM '1EQM is the crystal structure of binary complex of HPPK from E. coli with MgADP.' unspecified PDB 1EQ0 '1EQ0 is the solution structure of binary complex of HPPK from E. coli with MgAMPPCP.' unspecified PDB 1CBK ;1CBK is the crystal structure of binary complex of HPPK from Haemophilus influenzae with a 6-hydroxymethyl-7,8-dihydropterin analog. ; unspecified PDB 1DY3 '1DY3 is the crystal structure of ternary complex of HPPK from E. coli with MgATP and a 6-hydroxymethyl-7,8-dihydropterin analog.' unspecified # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 1EQO _pdbx_database_status.recvd_initial_deposition_date 2000-04-05 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Blaszczyk, J.' 1 'Ji, X.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_DOI _citation.pdbx_database_id_PubMed primary 'Catalytic center assembly of HPPK as revealed by the crystal structure of a ternary complex at 1.25 A resolution.' 'Structure Fold.Des.' 8 1049 1058 2000 FODEFH UK 0969-2126 1263 ? '10.1016/S0969-2126(00)00502-5' ? 1 ;Crystal Structure of 6-hydroxymethyl-7,8-dihydropterin Pyrophosphokinase, a Potential Target for the Development of Novel Antimicrobial Agents ; 'Structure (London)' 7 489 496 1999 STRUE6 UK 0969-2126 2005 ? '10.1016/S0969-2126(99)80065-3' ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Blaszczyk, J.' 1 primary 'Shi, G.' 2 primary 'Yan, H.' 3 primary 'Ji, X.' 4 1 'Xiao, B.' 5 1 'Shi, G.' 6 1 'Chen, X.' 7 1 'Yan, H.' 8 1 'Ji, X.' 9 # _cell.entry_id 1EQO _cell.length_a 73.591 _cell.length_b 37.743 _cell.length_c 57.909 _cell.angle_alpha 90.00 _cell.angle_beta 116.94 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1EQO _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man '6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE' 17966.535 1 2.7.6.3 ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 2 ? ? ? ? 3 non-polymer syn 'CHLORIDE ION' 35.453 1 ? ? ? ? 4 non-polymer syn 'ACETATE ION' 59.044 4 ? ? ? ? 5 non-polymer syn 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' 505.208 1 ? ? ? ? 6 non-polymer syn 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN 195.179 1 ? ? ? ? 7 water nat water 18.015 343 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name HPPK # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 THR n 1 2 VAL n 1 3 ALA n 1 4 TYR n 1 5 ILE n 1 6 ALA n 1 7 ILE n 1 8 GLY n 1 9 SER n 1 10 ASN n 1 11 LEU n 1 12 ALA n 1 13 SER n 1 14 PRO n 1 15 LEU n 1 16 GLU n 1 17 GLN n 1 18 VAL n 1 19 ASN n 1 20 ALA n 1 21 ALA n 1 22 LEU n 1 23 LYS n 1 24 ALA n 1 25 LEU n 1 26 GLY n 1 27 ASP n 1 28 ILE n 1 29 PRO n 1 30 GLU n 1 31 SER n 1 32 HIS n 1 33 ILE n 1 34 LEU n 1 35 THR n 1 36 VAL n 1 37 SER n 1 38 SER n 1 39 PHE n 1 40 TYR n 1 41 ARG n 1 42 THR n 1 43 PRO n 1 44 PRO n 1 45 LEU n 1 46 GLY n 1 47 PRO n 1 48 GLN n 1 49 ASP n 1 50 GLN n 1 51 PRO n 1 52 ASP n 1 53 TYR n 1 54 LEU n 1 55 ASN n 1 56 ALA n 1 57 ALA n 1 58 VAL n 1 59 ALA n 1 60 LEU n 1 61 GLU n 1 62 THR n 1 63 SER n 1 64 LEU n 1 65 ALA n 1 66 PRO n 1 67 GLU n 1 68 GLU n 1 69 LEU n 1 70 LEU n 1 71 ASN n 1 72 HIS n 1 73 THR n 1 74 GLN n 1 75 ARG n 1 76 ILE n 1 77 GLU n 1 78 LEU n 1 79 GLN n 1 80 GLN n 1 81 GLY n 1 82 ARG n 1 83 VAL n 1 84 ARG n 1 85 LYS n 1 86 ALA n 1 87 GLU n 1 88 ARG n 1 89 TRP n 1 90 GLY n 1 91 PRO n 1 92 ARG n 1 93 THR n 1 94 LEU n 1 95 ASP n 1 96 LEU n 1 97 ASP n 1 98 ILE n 1 99 MET n 1 100 LEU n 1 101 PHE n 1 102 GLY n 1 103 ASN n 1 104 GLU n 1 105 VAL n 1 106 ILE n 1 107 ASN n 1 108 THR n 1 109 GLU n 1 110 ARG n 1 111 LEU n 1 112 THR n 1 113 VAL n 1 114 PRO n 1 115 HIS n 1 116 TYR n 1 117 ASP n 1 118 MET n 1 119 LYS n 1 120 ASN n 1 121 ARG n 1 122 GLY n 1 123 PHE n 1 124 MET n 1 125 LEU n 1 126 TRP n 1 127 PRO n 1 128 LEU n 1 129 PHE n 1 130 GLU n 1 131 ILE n 1 132 ALA n 1 133 PRO n 1 134 GLU n 1 135 LEU n 1 136 VAL n 1 137 PHE n 1 138 PRO n 1 139 ASP n 1 140 GLY n 1 141 GLU n 1 142 MET n 1 143 LEU n 1 144 ARG n 1 145 GLN n 1 146 ILE n 1 147 LEU n 1 148 HIS n 1 149 THR n 1 150 ARG n 1 151 ALA n 1 152 PHE n 1 153 ASP n 1 154 LYS n 1 155 LEU n 1 156 ASN n 1 157 LYS n 1 158 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name bacteria _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id ? _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name bacteria _entity_src_gen.pdbx_host_org_scientific_name 'ESCHERICHIA COLI' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id ? _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET17B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code HPPK_ECOLI _struct_ref.db_name SWS _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EQO _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 158 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P26281 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 158 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 158 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ACT non-polymer . 'ACETATE ION' ? 'C2 H3 O2 -1' 59.044 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 APC non-polymer . 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' "ALPHA,BETA-METHYLENEADENOSINE-5'-TRIPHOSPHATE" 'C11 H18 N5 O12 P3' 505.208 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CL non-polymer . 'CHLORIDE ION' ? 'Cl -1' 35.453 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HHP non-polymer . 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN ? 'C7 H9 N5 O2' 195.179 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1EQO _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.04 _exptl_crystal.density_percent_sol 35.7 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.temp 292.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG4000, magnesium chloride, acetate, glycerol , pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 292.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM-4' _diffrn_detector.pdbx_collection_date 1999-07-23 _diffrn_detector.details Mirror # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Silicon 111' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.92000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X9B' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X9B _diffrn_source.pdbx_wavelength 0.92000 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EQO _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 30.0 _reflns.d_resolution_high 1.25 _reflns.number_obs 38972 _reflns.number_all 38972 _reflns.percent_possible_obs 99.2 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_av_sigmaI 15.8 _reflns.B_iso_Wilson_estimate 13.1 _reflns.pdbx_redundancy 3.4 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 _reflns.pdbx_netI_over_sigmaI ? # _reflns_shell.d_res_high 1.25 _reflns_shell.d_res_low 1.29 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 97.1 _reflns_shell.Rmerge_I_obs 0.433 _reflns_shell.meanI_over_sigI_obs 2.1560 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.1 _reflns_shell.number_unique_all 3769 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1EQO _refine.ls_number_reflns_obs 35427 _refine.ls_number_reflns_all 37078 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 4.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 30.00 _refine.ls_d_res_high 1.25 _refine.ls_percent_reflns_obs 94.2 _refine.ls_R_factor_obs 0.114 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1004 _refine.ls_R_factor_R_free 0.146 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 0. _refine.ls_number_reflns_R_free 1894 _refine.ls_number_parameters 14405 _refine.ls_number_restraints 17537 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-202' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details 'Full-matrix least-squares procedure, with block of parameters set for each cycle of refinement' _refine.pdbx_starting_model 1HKA _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'ENGH AND HUBER' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EQO _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 10 _refine_analyze.occupancy_sum_hydrogen 1296. _refine_analyze.occupancy_sum_non_hydrogen 1664. _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1296 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 64 _refine_hist.number_atoms_solvent 343 _refine_hist.number_atoms_total 1703 _refine_hist.d_res_high 1.25 _refine_hist.d_res_low 30.00 _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.000 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.031 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.156 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.166 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.225 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.019 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.048 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.087 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1EQO _pdbx_refine.R_factor_all_no_cutoff ? _pdbx_refine.R_factor_obs_no_cutoff 0.114 _pdbx_refine.free_R_factor_no_cutoff ? _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 5.114 _pdbx_refine.free_R_val_test_set_ct_no_cutoff ? _pdbx_refine.R_factor_all_4sig_cutoff ? _pdbx_refine.R_factor_obs_4sig_cutoff 0.095 _pdbx_refine.free_R_factor_4sig_cutoff 0.131 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 5.235 _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1592 _pdbx_refine.number_reflns_obs_4sig_cutoff 30413 _pdbx_refine.number_reflns_obs_no_cutoff ? _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _struct.entry_id 1EQO _struct.title ;CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE FROM E. COLI WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.25 ANGSTROM RESOLUTION ; _struct.pdbx_descriptor ;TERNARY COMPLEX OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE FROM E. COLI WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.25 ANGSTROM RESOLUTION ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EQO _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text ;PYROPHOSPHOKINASE, PYROPHOSPHORYL TRANSFER, FOLATE, HPPK, PTERIN, 6-HYDROXYMETHYL-7, 8-DIHYDROPTERIN, TERNARY COMPLEX, SUBSTRATE SPECIFICITY, ANTIMICROBIAL AGENT, DRUG DESIGN, TRANSFERASE ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? G N N 4 ? H N N 4 ? I N N 5 ? J N N 6 ? K N N 7 ? # _struct_biol.id 1 _struct_biol.details Monomer _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 SER A 13 ? ASP A 27 ? SER A 13 ASP A 27 1 ? 15 HELX_P HELX_P2 2 ALA A 65 ? GLN A 80 ? ALA A 65 GLN A 80 1 ? 16 HELX_P HELX_P3 3 ASP A 117 ? ASN A 120 ? ASP A 117 ASN A 120 5 ? 4 HELX_P HELX_P4 4 ARG A 121 ? ALA A 132 ? ARG A 121 ALA A 132 1 ? 12 HELX_P HELX_P5 5 MET A 142 ? ALA A 151 ? MET A 142 ALA A 151 1 ? 10 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id VAL _struct_mon_prot_cis.label_seq_id 113 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id VAL _struct_mon_prot_cis.auth_seq_id 113 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 114 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 114 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -9.50 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 4 ? B ? 5 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ASP A 95 ? PHE A 101 ? ASP A 95 PHE A 101 A 2 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9 A 3 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62 A 4 SER A 31 ? VAL A 36 ? SER A 31 VAL A 36 B 1 ASP A 95 ? PHE A 101 ? ASP A 95 PHE A 101 B 2 VAL A 2 ? SER A 9 ? VAL A 2 SER A 9 B 3 TYR A 53 ? THR A 62 ? TYR A 53 THR A 62 B 4 TYR A 40 ? THR A 42 ? TYR A 40 THR A 42 B 5 ASN A 156 ? LYS A 157 ? ASN A 156 LYS A 157 C 1 ILE A 106 ? ASN A 107 ? ILE A 106 ASN A 107 C 2 THR A 112 ? VAL A 113 ? THR A 112 VAL A 113 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LEU A 100 ? O LEU A 100 N TYR A 4 ? N TYR A 4 A 2 3 O SER A 9 ? O SER A 9 N LEU A 54 ? N LEU A 54 A 3 4 N GLU A 61 ? N GLU A 61 O HIS A 32 ? O HIS A 32 B 1 2 O LEU A 100 ? O LEU A 100 N TYR A 4 ? N TYR A 4 B 2 3 O SER A 9 ? O SER A 9 N LEU A 54 ? N LEU A 54 B 3 4 O ASN A 55 ? O ASN A 55 N TYR A 40 ? N TYR A 40 B 4 5 N ARG A 41 ? N ARG A 41 O ASN A 156 ? O ASN A 156 C 1 2 N ILE A 106 ? N ILE A 106 O VAL A 113 ? O VAL A 113 # _database_PDB_matrix.entry_id 1EQO _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _atom_sites.entry_id 1EQO _atom_sites.fract_transf_matrix[1][1] 0.013589 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.006906 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.026495 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.019371 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C CL MG N O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 THR 1 1 1 THR THR A . n A 1 2 VAL 2 2 2 VAL VAL A . n A 1 3 ALA 3 3 3 ALA ALA A . n A 1 4 TYR 4 4 4 TYR TYR A . n A 1 5 ILE 5 5 5 ILE ILE A . n A 1 6 ALA 6 6 6 ALA ALA A . n A 1 7 ILE 7 7 7 ILE ILE A . n A 1 8 GLY 8 8 8 GLY GLY A . n A 1 9 SER 9 9 9 SER SER A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 LEU 11 11 11 LEU LEU A . n A 1 12 ALA 12 12 12 ALA ALA A . n A 1 13 SER 13 13 13 SER SER A . n A 1 14 PRO 14 14 14 PRO PRO A . n A 1 15 LEU 15 15 15 LEU LEU A . n A 1 16 GLU 16 16 16 GLU GLU A . n A 1 17 GLN 17 17 17 GLN GLN A . n A 1 18 VAL 18 18 18 VAL VAL A . n A 1 19 ASN 19 19 19 ASN ASN A . n A 1 20 ALA 20 20 20 ALA ALA A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 LYS 23 23 23 LYS LYS A . n A 1 24 ALA 24 24 24 ALA ALA A . n A 1 25 LEU 25 25 25 LEU LEU A . n A 1 26 GLY 26 26 26 GLY GLY A . n A 1 27 ASP 27 27 27 ASP ASP A . n A 1 28 ILE 28 28 28 ILE ILE A . n A 1 29 PRO 29 29 29 PRO PRO A . n A 1 30 GLU 30 30 30 GLU GLU A . n A 1 31 SER 31 31 31 SER SER A . n A 1 32 HIS 32 32 32 HIS HIS A . n A 1 33 ILE 33 33 33 ILE ILE A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 THR 35 35 35 THR THR A . n A 1 36 VAL 36 36 36 VAL VAL A . n A 1 37 SER 37 37 37 SER SER A . n A 1 38 SER 38 38 38 SER SER A . n A 1 39 PHE 39 39 39 PHE PHE A . n A 1 40 TYR 40 40 40 TYR TYR A . n A 1 41 ARG 41 41 41 ARG ARG A . n A 1 42 THR 42 42 42 THR THR A . n A 1 43 PRO 43 43 43 PRO PRO A . n A 1 44 PRO 44 44 44 PRO PRO A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 GLY 46 46 46 GLY GLY A . n A 1 47 PRO 47 47 47 PRO PRO A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 ASP 49 49 49 ASP ASP A . n A 1 50 GLN 50 50 50 GLN GLN A . n A 1 51 PRO 51 51 51 PRO PRO A . n A 1 52 ASP 52 52 52 ASP ASP A . n A 1 53 TYR 53 53 53 TYR TYR A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 ASN 55 55 55 ASN ASN A . n A 1 56 ALA 56 56 56 ALA ALA A . n A 1 57 ALA 57 57 57 ALA ALA A . n A 1 58 VAL 58 58 58 VAL VAL A . n A 1 59 ALA 59 59 59 ALA ALA A . n A 1 60 LEU 60 60 60 LEU LEU A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 THR 62 62 62 THR THR A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 LEU 64 64 64 LEU LEU A . n A 1 65 ALA 65 65 65 ALA ALA A . n A 1 66 PRO 66 66 66 PRO PRO A . n A 1 67 GLU 67 67 67 GLU GLU A . n A 1 68 GLU 68 68 68 GLU GLU A . n A 1 69 LEU 69 69 69 LEU LEU A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 HIS 72 72 72 HIS HIS A . n A 1 73 THR 73 73 73 THR THR A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 ARG 75 75 75 ARG ARG A . n A 1 76 ILE 76 76 76 ILE ILE A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 LEU 78 78 78 LEU LEU A . n A 1 79 GLN 79 79 79 GLN GLN A . n A 1 80 GLN 80 80 80 GLN GLN A . n A 1 81 GLY 81 81 81 GLY GLY A . n A 1 82 ARG 82 82 82 ARG ARG A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 ARG 84 84 84 ARG ARG A . n A 1 85 LYS 85 85 85 LYS LYS A . n A 1 86 ALA 86 86 86 ALA ALA A . n A 1 87 GLU 87 87 87 GLU GLU A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 TRP 89 89 89 TRP TRP A . n A 1 90 GLY 90 90 90 GLY GLY A . n A 1 91 PRO 91 91 91 PRO PRO A . n A 1 92 ARG 92 92 92 ARG ARG A . n A 1 93 THR 93 93 93 THR THR A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 ASP 95 95 95 ASP ASP A . n A 1 96 LEU 96 96 96 LEU LEU A . n A 1 97 ASP 97 97 97 ASP ASP A . n A 1 98 ILE 98 98 98 ILE ILE A . n A 1 99 MET 99 99 99 MET MET A . n A 1 100 LEU 100 100 100 LEU LEU A . n A 1 101 PHE 101 101 101 PHE PHE A . n A 1 102 GLY 102 102 102 GLY GLY A . n A 1 103 ASN 103 103 103 ASN ASN A . n A 1 104 GLU 104 104 104 GLU GLU A . n A 1 105 VAL 105 105 105 VAL VAL A . n A 1 106 ILE 106 106 106 ILE ILE A . n A 1 107 ASN 107 107 107 ASN ASN A . n A 1 108 THR 108 108 108 THR THR A . n A 1 109 GLU 109 109 109 GLU GLU A . n A 1 110 ARG 110 110 110 ARG ARG A . n A 1 111 LEU 111 111 111 LEU LEU A . n A 1 112 THR 112 112 112 THR THR A . n A 1 113 VAL 113 113 113 VAL VAL A . n A 1 114 PRO 114 114 114 PRO PRO A . n A 1 115 HIS 115 115 115 HIS HIS A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 ASP 117 117 117 ASP ASP A . n A 1 118 MET 118 118 118 MET MET A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 ASN 120 120 120 ASN ASN A . n A 1 121 ARG 121 121 121 ARG ARG A . n A 1 122 GLY 122 122 122 GLY GLY A . n A 1 123 PHE 123 123 123 PHE PHE A . n A 1 124 MET 124 124 124 MET MET A . n A 1 125 LEU 125 125 125 LEU LEU A . n A 1 126 TRP 126 126 126 TRP TRP A . n A 1 127 PRO 127 127 127 PRO PRO A . n A 1 128 LEU 128 128 128 LEU LEU A . n A 1 129 PHE 129 129 129 PHE PHE A . n A 1 130 GLU 130 130 130 GLU GLU A . n A 1 131 ILE 131 131 131 ILE ILE A . n A 1 132 ALA 132 132 132 ALA ALA A . n A 1 133 PRO 133 133 133 PRO PRO A . n A 1 134 GLU 134 134 134 GLU GLU A . n A 1 135 LEU 135 135 135 LEU LEU A . n A 1 136 VAL 136 136 136 VAL VAL A . n A 1 137 PHE 137 137 137 PHE PHE A . n A 1 138 PRO 138 138 138 PRO PRO A . n A 1 139 ASP 139 139 139 ASP ASP A . n A 1 140 GLY 140 140 140 GLY GLY A . n A 1 141 GLU 141 141 141 GLU GLU A . n A 1 142 MET 142 142 142 MET MET A . n A 1 143 LEU 143 143 143 LEU LEU A . n A 1 144 ARG 144 144 144 ARG ARG A . n A 1 145 GLN 145 145 145 GLN GLN A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 LEU 147 147 147 LEU LEU A . n A 1 148 HIS 148 148 148 HIS HIS A . n A 1 149 THR 149 149 149 THR THR A . n A 1 150 ARG 150 150 150 ARG ARG A . n A 1 151 ALA 151 151 151 ALA ALA A . n A 1 152 PHE 152 152 152 PHE PHE A . n A 1 153 ASP 153 153 153 ASP ASP A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 LEU 155 155 155 LEU LEU A . n A 1 156 ASN 156 156 156 ASN ASN A . n A 1 157 LYS 157 157 157 LYS LYS A . n A 1 158 TRP 158 158 158 TRP TRP A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 161 161 MG MG A . C 2 MG 1 162 162 MG MG A . D 3 CL 1 163 163 CL CL ? . E 4 ACT 1 164 164 ACT ACE ? . F 4 ACT 1 165 165 ACT ACE ? . G 4 ACT 1 166 166 ACT ACE ? . H 4 ACT 1 167 167 ACT ACE ? . I 5 APC 1 171 171 APC APC ? . J 6 HHP 1 181 181 HHP HHP ? . K 7 HOH 1 201 201 HOH HOH ? . K 7 HOH 2 202 202 HOH HOH ? . K 7 HOH 3 203 203 HOH HOH ? . K 7 HOH 4 204 204 HOH HOH ? . K 7 HOH 5 205 205 HOH HOH ? . K 7 HOH 6 206 206 HOH HOH ? . K 7 HOH 7 207 207 HOH HOH ? . K 7 HOH 8 208 208 HOH HOH ? . K 7 HOH 9 209 209 HOH HOH ? . K 7 HOH 10 210 210 HOH HOH ? . K 7 HOH 11 211 211 HOH HOH ? . K 7 HOH 12 212 212 HOH HOH ? . K 7 HOH 13 213 213 HOH HOH ? . K 7 HOH 14 214 214 HOH HOH ? . K 7 HOH 15 215 215 HOH HOH ? . K 7 HOH 16 216 216 HOH HOH ? . K 7 HOH 17 217 217 HOH HOH ? . K 7 HOH 18 218 218 HOH HOH ? . K 7 HOH 19 219 219 HOH HOH ? . K 7 HOH 20 220 220 HOH HOH ? . K 7 HOH 21 221 221 HOH HOH ? . K 7 HOH 22 222 222 HOH HOH ? . K 7 HOH 23 223 223 HOH HOH ? . K 7 HOH 24 224 224 HOH HOH ? . K 7 HOH 25 225 225 HOH HOH ? . K 7 HOH 26 226 226 HOH HOH ? . K 7 HOH 27 227 227 HOH HOH ? . K 7 HOH 28 228 228 HOH HOH ? . K 7 HOH 29 229 229 HOH HOH ? . K 7 HOH 30 230 230 HOH HOH ? . K 7 HOH 31 231 231 HOH HOH ? . K 7 HOH 32 232 232 HOH HOH ? . K 7 HOH 33 233 233 HOH HOH ? . K 7 HOH 34 234 234 HOH HOH ? . K 7 HOH 35 235 235 HOH HOH ? . K 7 HOH 36 236 236 HOH HOH ? . K 7 HOH 37 237 237 HOH HOH ? . K 7 HOH 38 238 238 HOH HOH ? . K 7 HOH 39 239 239 HOH HOH ? . K 7 HOH 40 240 240 HOH HOH ? . K 7 HOH 41 241 241 HOH HOH ? . K 7 HOH 42 242 242 HOH HOH ? . K 7 HOH 43 243 243 HOH HOH ? . K 7 HOH 44 244 244 HOH HOH ? . K 7 HOH 45 245 245 HOH HOH ? . K 7 HOH 46 246 246 HOH HOH ? . K 7 HOH 47 247 247 HOH HOH ? . K 7 HOH 48 248 248 HOH HOH ? . K 7 HOH 49 249 249 HOH HOH ? . K 7 HOH 50 250 250 HOH HOH ? . K 7 HOH 51 251 251 HOH HOH ? . K 7 HOH 52 252 252 HOH HOH ? . K 7 HOH 53 253 253 HOH HOH ? . K 7 HOH 54 254 254 HOH HOH ? . K 7 HOH 55 255 255 HOH HOH ? . K 7 HOH 56 256 256 HOH HOH ? . K 7 HOH 57 257 257 HOH HOH ? . K 7 HOH 58 258 258 HOH HOH ? . K 7 HOH 59 259 259 HOH HOH ? . K 7 HOH 60 260 260 HOH HOH ? . K 7 HOH 61 261 261 HOH HOH ? . K 7 HOH 62 262 262 HOH HOH ? . K 7 HOH 63 263 263 HOH HOH ? . K 7 HOH 64 264 264 HOH HOH ? . K 7 HOH 65 265 265 HOH HOH ? . K 7 HOH 66 266 266 HOH HOH ? . K 7 HOH 67 267 267 HOH HOH ? . K 7 HOH 68 268 268 HOH HOH ? . K 7 HOH 69 269 269 HOH HOH ? . K 7 HOH 70 270 270 HOH HOH ? . K 7 HOH 71 271 271 HOH HOH ? . K 7 HOH 72 272 272 HOH HOH ? . K 7 HOH 73 273 273 HOH HOH ? . K 7 HOH 74 274 274 HOH HOH ? . K 7 HOH 75 275 275 HOH HOH ? . K 7 HOH 76 276 276 HOH HOH ? . K 7 HOH 77 277 277 HOH HOH ? . K 7 HOH 78 278 278 HOH HOH ? . K 7 HOH 79 279 279 HOH HOH ? . K 7 HOH 80 280 280 HOH HOH ? . K 7 HOH 81 281 281 HOH HOH ? . K 7 HOH 82 282 282 HOH HOH ? . K 7 HOH 83 283 283 HOH HOH ? . K 7 HOH 84 284 284 HOH HOH ? . K 7 HOH 85 285 285 HOH HOH ? . K 7 HOH 86 286 286 HOH HOH ? . K 7 HOH 87 287 287 HOH HOH ? . K 7 HOH 88 288 288 HOH HOH ? . K 7 HOH 89 289 289 HOH HOH ? . K 7 HOH 90 290 290 HOH HOH ? . K 7 HOH 91 291 291 HOH HOH ? . K 7 HOH 92 292 292 HOH HOH ? . K 7 HOH 93 293 293 HOH HOH ? . K 7 HOH 94 294 294 HOH HOH ? . K 7 HOH 95 295 295 HOH HOH ? . K 7 HOH 96 296 296 HOH HOH ? . K 7 HOH 97 297 297 HOH HOH ? . K 7 HOH 98 298 298 HOH HOH ? . K 7 HOH 99 299 299 HOH HOH ? . K 7 HOH 100 300 300 HOH HOH ? . K 7 HOH 101 301 301 HOH HOH ? . K 7 HOH 102 302 302 HOH HOH ? . K 7 HOH 103 303 303 HOH HOH ? . K 7 HOH 104 304 304 HOH HOH ? . K 7 HOH 105 305 305 HOH HOH ? . K 7 HOH 106 306 306 HOH HOH ? . K 7 HOH 107 307 307 HOH HOH ? . K 7 HOH 108 308 308 HOH HOH ? . K 7 HOH 109 309 309 HOH HOH ? . K 7 HOH 110 310 310 HOH HOH ? . K 7 HOH 111 311 311 HOH HOH ? . K 7 HOH 112 312 312 HOH HOH ? . K 7 HOH 113 313 313 HOH HOH ? . K 7 HOH 114 314 314 HOH HOH ? . K 7 HOH 115 315 315 HOH HOH ? . K 7 HOH 116 316 316 HOH HOH ? . K 7 HOH 117 317 317 HOH HOH ? . K 7 HOH 118 318 318 HOH HOH ? . K 7 HOH 119 319 319 HOH HOH ? . K 7 HOH 120 320 320 HOH HOH ? . K 7 HOH 121 321 321 HOH HOH ? . K 7 HOH 122 322 322 HOH HOH ? . K 7 HOH 123 323 323 HOH HOH ? . K 7 HOH 124 324 324 HOH HOH ? . K 7 HOH 125 325 325 HOH HOH ? . K 7 HOH 126 326 326 HOH HOH ? . K 7 HOH 127 327 327 HOH HOH ? . K 7 HOH 128 328 328 HOH HOH ? . K 7 HOH 129 329 329 HOH HOH ? . K 7 HOH 130 330 330 HOH HOH ? . K 7 HOH 131 331 331 HOH HOH ? . K 7 HOH 132 332 332 HOH HOH ? . K 7 HOH 133 333 333 HOH HOH ? . K 7 HOH 134 334 334 HOH HOH ? . K 7 HOH 135 335 335 HOH HOH ? . K 7 HOH 136 336 336 HOH HOH ? . K 7 HOH 137 337 337 HOH HOH ? . K 7 HOH 138 338 338 HOH HOH ? . K 7 HOH 139 339 339 HOH HOH ? . K 7 HOH 140 340 340 HOH HOH ? . K 7 HOH 141 341 341 HOH HOH ? . K 7 HOH 142 342 342 HOH HOH ? . K 7 HOH 143 343 343 HOH HOH ? . K 7 HOH 144 344 344 HOH HOH ? . K 7 HOH 145 345 345 HOH HOH ? . K 7 HOH 146 346 346 HOH HOH ? . K 7 HOH 147 347 347 HOH HOH ? . K 7 HOH 148 348 348 HOH HOH ? . K 7 HOH 149 349 349 HOH HOH ? . K 7 HOH 150 350 350 HOH HOH ? . K 7 HOH 151 351 351 HOH HOH ? . K 7 HOH 152 352 352 HOH HOH ? . K 7 HOH 153 353 353 HOH HOH ? . K 7 HOH 154 354 354 HOH HOH ? . K 7 HOH 155 355 355 HOH HOH ? . K 7 HOH 156 356 356 HOH HOH ? . K 7 HOH 157 357 357 HOH HOH ? . K 7 HOH 158 358 358 HOH HOH ? . K 7 HOH 159 359 359 HOH HOH ? . K 7 HOH 160 360 360 HOH HOH ? . K 7 HOH 161 361 361 HOH HOH ? . K 7 HOH 162 362 362 HOH HOH ? . K 7 HOH 163 363 363 HOH HOH ? . K 7 HOH 164 364 364 HOH HOH ? . K 7 HOH 165 365 365 HOH HOH ? . K 7 HOH 166 366 366 HOH HOH ? . K 7 HOH 167 367 367 HOH HOH ? . K 7 HOH 168 368 368 HOH HOH ? . K 7 HOH 169 369 369 HOH HOH ? . K 7 HOH 170 370 370 HOH HOH ? . K 7 HOH 171 371 371 HOH HOH ? . K 7 HOH 172 372 372 HOH HOH ? . K 7 HOH 173 373 373 HOH HOH ? . K 7 HOH 174 374 374 HOH HOH ? . K 7 HOH 175 375 375 HOH HOH ? . K 7 HOH 176 376 376 HOH HOH ? . K 7 HOH 177 377 377 HOH HOH ? . K 7 HOH 178 378 378 HOH HOH ? . K 7 HOH 179 379 379 HOH HOH ? . K 7 HOH 180 380 380 HOH HOH ? . K 7 HOH 181 381 381 HOH HOH ? . K 7 HOH 182 382 382 HOH HOH ? . K 7 HOH 183 383 383 HOH HOH ? . K 7 HOH 184 384 384 HOH HOH ? . K 7 HOH 185 385 385 HOH HOH ? . K 7 HOH 186 386 386 HOH HOH ? . K 7 HOH 187 387 387 HOH HOH ? . K 7 HOH 188 388 388 HOH HOH ? . K 7 HOH 189 389 389 HOH HOH ? . K 7 HOH 190 390 390 HOH HOH ? . K 7 HOH 191 391 391 HOH HOH ? . K 7 HOH 192 392 392 HOH HOH ? . K 7 HOH 193 393 393 HOH HOH ? . K 7 HOH 194 394 394 HOH HOH ? . K 7 HOH 195 395 395 HOH HOH ? . K 7 HOH 196 396 396 HOH HOH ? . K 7 HOH 197 397 397 HOH HOH ? . K 7 HOH 198 398 398 HOH HOH ? . K 7 HOH 199 399 399 HOH HOH ? . K 7 HOH 200 400 400 HOH HOH ? . K 7 HOH 201 401 401 HOH HOH ? . K 7 HOH 202 402 402 HOH HOH ? . K 7 HOH 203 403 403 HOH HOH ? . K 7 HOH 204 404 404 HOH HOH ? . K 7 HOH 205 405 405 HOH HOH ? . K 7 HOH 206 406 406 HOH HOH ? . K 7 HOH 207 407 407 HOH HOH ? . K 7 HOH 208 408 408 HOH HOH ? . K 7 HOH 209 409 409 HOH HOH ? . K 7 HOH 210 410 410 HOH HOH ? . K 7 HOH 211 411 411 HOH HOH ? . K 7 HOH 212 412 412 HOH HOH ? . K 7 HOH 213 413 413 HOH HOH ? . K 7 HOH 214 414 414 HOH HOH ? . K 7 HOH 215 415 415 HOH HOH ? . K 7 HOH 216 416 416 HOH HOH ? . K 7 HOH 217 417 417 HOH HOH ? . K 7 HOH 218 418 418 HOH HOH ? . K 7 HOH 219 419 419 HOH HOH ? . K 7 HOH 220 420 420 HOH HOH ? . K 7 HOH 221 421 421 HOH HOH ? . K 7 HOH 222 422 422 HOH HOH ? . K 7 HOH 223 423 423 HOH HOH ? . K 7 HOH 224 424 424 HOH HOH ? . K 7 HOH 225 425 425 HOH HOH ? . K 7 HOH 226 426 426 HOH HOH ? . K 7 HOH 227 427 427 HOH HOH ? . K 7 HOH 228 428 428 HOH HOH ? . K 7 HOH 229 429 429 HOH HOH ? . K 7 HOH 230 430 430 HOH HOH ? . K 7 HOH 231 431 431 HOH HOH ? . K 7 HOH 232 432 432 HOH HOH ? . K 7 HOH 233 433 433 HOH HOH ? . K 7 HOH 234 434 434 HOH HOH ? . K 7 HOH 235 435 435 HOH HOH ? . K 7 HOH 236 436 436 HOH HOH ? . K 7 HOH 237 437 437 HOH HOH ? . K 7 HOH 238 438 438 HOH HOH ? . K 7 HOH 239 439 439 HOH HOH ? . K 7 HOH 240 440 440 HOH HOH ? . K 7 HOH 241 441 441 HOH HOH ? . K 7 HOH 242 442 442 HOH HOH ? . K 7 HOH 243 443 443 HOH HOH ? . K 7 HOH 244 444 444 HOH HOH ? . K 7 HOH 245 445 445 HOH HOH ? . K 7 HOH 246 446 446 HOH HOH ? . K 7 HOH 247 447 447 HOH HOH ? . K 7 HOH 248 448 448 HOH HOH ? . K 7 HOH 249 449 449 HOH HOH ? . K 7 HOH 250 450 450 HOH HOH ? . K 7 HOH 251 451 451 HOH HOH ? . K 7 HOH 252 452 452 HOH HOH ? . K 7 HOH 253 453 453 HOH HOH ? . K 7 HOH 254 454 454 HOH HOH ? . K 7 HOH 255 455 455 HOH HOH ? . K 7 HOH 256 456 456 HOH HOH ? . K 7 HOH 257 457 457 HOH HOH ? . K 7 HOH 258 458 458 HOH HOH ? . K 7 HOH 259 459 459 HOH HOH ? . K 7 HOH 260 460 460 HOH HOH ? . K 7 HOH 261 461 461 HOH HOH ? . K 7 HOH 262 462 462 HOH HOH ? . K 7 HOH 263 463 463 HOH HOH ? . K 7 HOH 264 464 464 HOH HOH ? . K 7 HOH 265 465 465 HOH HOH ? . K 7 HOH 266 466 466 HOH HOH ? . K 7 HOH 267 467 467 HOH HOH ? . K 7 HOH 268 468 468 HOH HOH ? . K 7 HOH 269 469 469 HOH HOH ? . K 7 HOH 270 470 470 HOH HOH ? . K 7 HOH 271 471 471 HOH HOH ? . K 7 HOH 272 472 472 HOH HOH ? . K 7 HOH 273 473 473 HOH HOH ? . K 7 HOH 274 474 474 HOH HOH ? . K 7 HOH 275 475 475 HOH HOH ? . K 7 HOH 276 476 476 HOH HOH ? . K 7 HOH 277 477 477 HOH HOH ? . K 7 HOH 278 478 478 HOH HOH ? . K 7 HOH 279 479 479 HOH HOH ? . K 7 HOH 280 480 480 HOH HOH ? . K 7 HOH 281 481 481 HOH HOH ? . K 7 HOH 282 482 482 HOH HOH ? . K 7 HOH 283 483 483 HOH HOH ? . K 7 HOH 284 484 484 HOH HOH ? . K 7 HOH 285 485 485 HOH HOH ? . K 7 HOH 286 486 486 HOH HOH ? . K 7 HOH 287 487 487 HOH HOH ? . K 7 HOH 288 488 488 HOH HOH ? . K 7 HOH 289 489 489 HOH HOH ? . K 7 HOH 290 490 490 HOH HOH ? . K 7 HOH 291 491 491 HOH HOH ? . K 7 HOH 292 492 492 HOH HOH ? . K 7 HOH 293 493 493 HOH HOH ? . K 7 HOH 294 494 494 HOH HOH ? . K 7 HOH 295 495 495 HOH HOH ? . K 7 HOH 296 496 496 HOH HOH ? . K 7 HOH 297 497 497 HOH HOH ? . K 7 HOH 298 498 498 HOH HOH ? . K 7 HOH 299 499 499 HOH HOH ? . K 7 HOH 300 500 500 HOH HOH ? . K 7 HOH 301 501 501 HOH HOH ? . K 7 HOH 302 502 502 HOH HOH ? . K 7 HOH 303 503 503 HOH HOH ? . K 7 HOH 304 504 504 HOH HOH ? . K 7 HOH 305 505 505 HOH HOH ? . K 7 HOH 306 506 506 HOH HOH ? . K 7 HOH 307 507 507 HOH HOH ? . K 7 HOH 308 508 508 HOH HOH ? . K 7 HOH 309 509 509 HOH HOH ? . K 7 HOH 310 510 510 HOH HOH ? . K 7 HOH 311 511 511 HOH HOH ? . K 7 HOH 312 512 512 HOH HOH ? . K 7 HOH 313 513 513 HOH HOH ? . K 7 HOH 314 514 514 HOH HOH ? . K 7 HOH 315 515 515 HOH HOH ? . K 7 HOH 316 516 516 HOH HOH ? . K 7 HOH 317 517 517 HOH HOH ? . K 7 HOH 318 518 518 HOH HOH ? . K 7 HOH 319 519 519 HOH HOH ? . K 7 HOH 320 520 520 HOH HOH ? . K 7 HOH 321 521 521 HOH HOH ? . K 7 HOH 322 522 522 HOH HOH ? . K 7 HOH 323 523 523 HOH HOH ? . K 7 HOH 324 524 524 HOH HOH ? . K 7 HOH 325 525 525 HOH HOH ? . K 7 HOH 326 526 526 HOH HOH ? . K 7 HOH 327 527 527 HOH HOH ? . K 7 HOH 328 528 528 HOH HOH ? . K 7 HOH 329 529 529 HOH HOH ? . K 7 HOH 330 530 530 HOH HOH ? . K 7 HOH 331 531 531 HOH HOH ? . K 7 HOH 332 532 532 HOH HOH ? . K 7 HOH 333 533 533 HOH HOH ? . K 7 HOH 334 534 534 HOH HOH ? . K 7 HOH 335 535 535 HOH HOH ? . K 7 HOH 336 536 536 HOH HOH ? . K 7 HOH 337 537 537 HOH HOH ? . K 7 HOH 338 538 538 HOH HOH ? . K 7 HOH 339 539 539 HOH HOH ? . K 7 HOH 340 540 540 HOH HOH ? . K 7 HOH 341 541 541 HOH HOH ? . K 7 HOH 342 542 542 HOH HOH ? . K 7 HOH 343 543 543 HOH HOH ? . # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 . ACT 167 ? H ACT . 2 1 . ACT 167 ? H ACT . 3 1 . HOH 406 ? K HOH . 4 1 . HOH 414 ? K HOH . 5 1 . HOH 472 ? K HOH . 6 1 . HOH 541 ? K HOH . 7 1 . HOH 542 ? K HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-10-25 2 'Structure model' 1 1 2003-08-26 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data collection' . ? 1 SCALEPACK 'data reduction' . ? 2 AMoRE 'model building' . ? 3 SHELXL-97 refinement . ? 4 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A TYR 4 ? ? CG A TYR 4 ? ? CD2 A TYR 4 ? ? 126.21 121.00 5.21 0.60 N 2 1 NE A ARG 41 ? ? CZ A ARG 41 ? ? NH1 A ARG 41 ? ? 124.48 120.30 4.18 0.50 N 3 1 NE A ARG 41 ? ? CZ A ARG 41 ? ? NH2 A ARG 41 ? ? 116.88 120.30 -3.42 0.50 N 4 1 NE A ARG 82 ? ? CZ A ARG 82 ? ? NH2 A ARG 82 ? ? 113.81 120.30 -6.49 0.50 N 5 1 CG1 A VAL 83 ? A CB A VAL 83 ? ? CG2 A VAL 83 ? A 120.58 110.90 9.68 1.60 N 6 1 NE A ARG 84 ? ? CZ A ARG 84 ? ? NH1 A ARG 84 ? ? 124.17 120.30 3.87 0.50 N 7 1 NE A ARG 92 ? ? CZ A ARG 92 ? ? NH1 A ARG 92 ? ? 126.25 120.30 5.95 0.50 N 8 1 NE A ARG 110 ? ? CZ A ARG 110 ? ? NH2 A ARG 110 ? ? 123.33 120.30 3.03 0.50 N # _pdbx_validate_torsion.id 1 _pdbx_validate_torsion.PDB_model_num 1 _pdbx_validate_torsion.auth_comp_id SER _pdbx_validate_torsion.auth_asym_id A _pdbx_validate_torsion.auth_seq_id 13 _pdbx_validate_torsion.PDB_ins_code ? _pdbx_validate_torsion.label_alt_id ? _pdbx_validate_torsion.phi 65.24 _pdbx_validate_torsion.psi 82.46 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id HIS _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 148 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle 17.91 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 . APC 171 ? "O5'" ? I APC 1 "O5'" 2 1 N 1 . APC 171 ? "C5'" ? I APC 1 "C5'" 3 1 N 1 . APC 171 ? "C4'" ? I APC 1 "C4'" 4 1 N 1 . APC 171 ? "O4'" ? I APC 1 "O4'" 5 1 N 1 . APC 171 ? "C3'" ? I APC 1 "C3'" 6 1 N 1 . APC 171 ? "O3'" ? I APC 1 "O3'" 7 1 N 1 . APC 171 ? "C2'" ? I APC 1 "C2'" 8 1 N 1 . APC 171 ? "O2'" ? I APC 1 "O2'" 9 1 N 1 . APC 171 ? "C1'" ? I APC 1 "C1'" # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'CHLORIDE ION' CL 4 'ACETATE ION' ACT 5 'DIPHOSPHOMETHYLPHOSPHONIC ACID ADENOSYL ESTER' APC 6 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN HHP 7 water HOH #