HEADER OXIDOREDUCTASE 06-APR-00 1EQW TITLE CRYSTAL STRUCTURE OF SALMONELLA TYPHIMURIUM CU,ZN SUPEROXIDE DISMUTASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CU,ZN SUPEROXIDE DISMUTASE; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 1.15.1.1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SALMONELLA TYPHIMURIUM; SOURCE 3 ORGANISM_TAXID: 602; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR: QC871 KEYWDS SUPEROXIDE DISMUTASE, GREEK KEY B-BARREL, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR A.PESCE,A.BATTISTONI,M.E.STROPPOLO,F.POLIZIO,M.NARDINI,J.S.KROLL, AUTHOR 2 P.R.LANGFORD,P.O'NEILL,M.SETTE,A.DESIDERI,M.BOLOGNESI REVDAT 4 11-OCT-17 1EQW 1 REMARK REVDAT 3 24-FEB-09 1EQW 1 VERSN REVDAT 2 01-APR-03 1EQW 1 JRNL REVDAT 1 08-SEP-00 1EQW 0 JRNL AUTH A.PESCE,A.BATTISTONI,M.E.STROPPOLO,F.POLIZIO,M.NARDINI, JRNL AUTH 2 J.S.KROLL,P.R.LANGFORD,P.O'NEILL,M.SETTE,A.DESIDERI, JRNL AUTH 3 M.BOLOGNESI JRNL TITL FUNCTIONAL AND CRYSTALLOGRAPHIC CHARACTERIZATION OF JRNL TITL 2 SALMONELLA TYPHIMURIUM CU,ZN SUPEROXIDE DISMUTASE CODED BY JRNL TITL 3 THE SODCI VIRULENCE GENE. JRNL REF J.MOL.BIOL. V. 302 465 2000 JRNL REFN ISSN 0022-2836 JRNL PMID 10970746 JRNL DOI 10.1006/JMBI.2000.4074 REMARK 2 REMARK 2 RESOLUTION. 2.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.60 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 96.2 REMARK 3 NUMBER OF REFLECTIONS : 27119 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.226 REMARK 3 FREE R VALUE : 0.283 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2712 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4445 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 178 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 40.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.350 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EQW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-APR-00. REMARK 100 THE DEPOSITION ID IS D_1000010832. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-MAY-98 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.54 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27119 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 22.600 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.2 REMARK 200 DATA REDUNDANCY : 3.000 REMARK 200 R MERGE (I) : 0.06200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.35600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.15 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.42 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 8000, SODIUM CHLORIDE, SODIUM REMARK 280 ACETATE, PH 4.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 71.07000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 20.32950 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 71.07000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 20.32950 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1510 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 13300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1430 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 12950 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 149 REMARK 465 GLU C 148 REMARK 465 LYS C 149 REMARK 465 GLU D 148 REMARK 465 LYS D 149 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 53C CG CD CE NZ REMARK 470 LYS A 131 CG CD CE NZ REMARK 470 GLU A 148 CG CD OE1 OE2 REMARK 470 LYS B 53C CG CD CE NZ REMARK 470 LYS B 53F CG CD CE NZ REMARK 470 LYS B 149 CG CD CE NZ REMARK 470 GLU C 17 CG CD OE1 OE2 REMARK 470 ASP C 75 CG OD1 OD2 REMARK 470 LYS C 131 CG CD CE NZ REMARK 470 LYS D 7 CG CD CE NZ REMARK 470 LYS D 53C CG CD CE NZ REMARK 470 ASP D 53D CG OD1 OD2 REMARK 470 LYS D 53F CG CD CE NZ REMARK 470 LYS D 66 CG CD CE NZ REMARK 470 LYS D 76 CG CD CE NZ REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 ASN A 2 N REMARK 480 LYS B 53C CB REMARK 480 SER D 106 OG REMARK 480 SER D 125 OG REMARK 480 LEU D 135 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 66 50.41 33.50 REMARK 500 ASN A 88 -170.62 -64.03 REMARK 500 ASP A 122 116.77 -163.54 REMARK 500 ILE A 147 98.99 -161.28 REMARK 500 PRO B 49 49.57 -70.20 REMARK 500 LYS B 53F 140.30 171.35 REMARK 500 GLU B 65 -8.10 -53.18 REMARK 500 ASP B 122 107.66 -160.94 REMARK 500 ILE B 147 -88.73 -91.35 REMARK 500 GLU B 148 -143.18 -152.54 REMARK 500 PRO C 49 48.23 -79.09 REMARK 500 MET C 57 1.59 -63.28 REMARK 500 LYS C 66 44.16 34.03 REMARK 500 ASP C 75 -4.98 -56.30 REMARK 500 PRO D 49 36.77 -80.48 REMARK 500 LEU D 62 109.29 -56.63 REMARK 500 HIS D 78 124.00 -37.03 REMARK 500 ASP D 122 113.04 -163.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 501 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 61 ND1 REMARK 620 2 HIS A 69 ND1 118.4 REMARK 620 3 HIS A 78 ND1 115.6 110.9 REMARK 620 4 ASP A 81 OD1 108.5 89.5 110.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 502 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 46 NE2 REMARK 620 2 HIS A 61 NE2 95.7 REMARK 620 3 HIS A 118 NE2 124.8 120.6 REMARK 620 4 HIS A 44 ND1 137.6 76.9 93.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 503 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 61 ND1 REMARK 620 2 HIS B 78 ND1 107.6 REMARK 620 3 HIS B 69 ND1 105.9 114.6 REMARK 620 4 ASP B 81 OD1 106.1 125.0 95.9 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU B 504 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 118 NE2 REMARK 620 2 HIS B 61 NE2 132.8 REMARK 620 3 HIS B 46 NE2 116.0 96.8 REMARK 620 4 HIS B 44 ND1 95.9 81.2 135.1 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 505 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 78 ND1 REMARK 620 2 ASP C 81 OD1 122.0 REMARK 620 3 HIS C 69 ND1 120.9 95.9 REMARK 620 4 HIS C 61 ND1 95.2 111.6 112.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU C 506 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS C 61 NE2 REMARK 620 2 HIS C 44 ND1 74.1 REMARK 620 3 HIS C 118 NE2 128.6 95.6 REMARK 620 4 HIS C 46 NE2 93.9 138.4 121.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 507 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 78 ND1 REMARK 620 2 HIS D 61 ND1 87.4 REMARK 620 3 HIS D 69 ND1 116.7 120.4 REMARK 620 4 ASP D 81 OD1 124.2 111.0 98.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU D 508 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS D 46 NE2 REMARK 620 2 HIS D 118 NE2 114.3 REMARK 620 3 HIS D 44 ND1 142.5 101.1 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU B 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU C 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU D 508 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1BZO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM REMARK 900 P.LEIOGNATHI REMARK 900 RELATED ID: 1ESO RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROKARYOTIC CU,ZN SUPEROXIDE DISMUTASE FROM REMARK 900 E.COLI DBREF 1EQW A 2 149 UNP P53636 SODC1_SALTY 22 177 DBREF 1EQW B 2 149 UNP P53636 SODC1_SALTY 22 177 DBREF 1EQW C 2 149 UNP P53636 SODC1_SALTY 22 177 DBREF 1EQW D 2 149 UNP P53636 SODC1_SALTY 22 177 SEQADV 1EQW MET A 116 UNP P53636 THR 148 CONFLICT SEQADV 1EQW MET B 116 UNP P53636 THR 148 CONFLICT SEQADV 1EQW MET C 116 UNP P53636 THR 148 CONFLICT SEQADV 1EQW MET D 116 UNP P53636 THR 148 CONFLICT SEQRES 1 A 156 ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SER SEQRES 2 A 156 GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER GLU SEQRES 3 A 156 THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN GLY SEQRES 4 A 156 LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR ASN SEQRES 5 A 156 PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU VAL SEQRES 6 A 156 PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU LYS SEQRES 7 A 156 THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY HIS SEQRES 8 A 156 LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP GLY SEQRES 9 A 156 THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SER SEQRES 10 A 156 LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS LYS SEQRES 11 A 156 GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU GLY SEQRES 12 A 156 GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU LYS SEQRES 1 B 156 ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SER SEQRES 2 B 156 GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER GLU SEQRES 3 B 156 THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN GLY SEQRES 4 B 156 LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR ASN SEQRES 5 B 156 PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU VAL SEQRES 6 B 156 PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU LYS SEQRES 7 B 156 THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY HIS SEQRES 8 B 156 LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP GLY SEQRES 9 B 156 THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SER SEQRES 10 B 156 LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS LYS SEQRES 11 B 156 GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU GLY SEQRES 12 B 156 GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU LYS SEQRES 1 C 156 ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SER SEQRES 2 C 156 GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER GLU SEQRES 3 C 156 THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN GLY SEQRES 4 C 156 LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR ASN SEQRES 5 C 156 PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU VAL SEQRES 6 C 156 PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU LYS SEQRES 7 C 156 THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY HIS SEQRES 8 C 156 LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP GLY SEQRES 9 C 156 THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SER SEQRES 10 C 156 LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS LYS SEQRES 11 C 156 GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU GLY SEQRES 12 C 156 GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU LYS SEQRES 1 D 156 ASN THR LEU THR VAL LYS MET ASN ASP ALA LEU SER SER SEQRES 2 D 156 GLY THR GLY GLU ASN ILE GLY GLU ILE THR VAL SER GLU SEQRES 3 D 156 THR PRO TYR GLY LEU LEU PHE THR PRO HIS LEU ASN GLY SEQRES 4 D 156 LEU THR PRO GLY ILE HIS GLY PHE HIS VAL HIS THR ASN SEQRES 5 D 156 PRO SER CYS MET PRO GLY MET LYS ASP GLY LYS GLU VAL SEQRES 6 D 156 PRO ALA LEU MET ALA GLY GLY HIS LEU ASP PRO GLU LYS SEQRES 7 D 156 THR GLY LYS HIS LEU GLY PRO TYR ASN ASP LYS GLY HIS SEQRES 8 D 156 LEU GLY ASP LEU PRO GLY LEU VAL VAL ASN ALA ASP GLY SEQRES 9 D 156 THR ALA THR TYR PRO LEU LEU ALA PRO ARG LEU LYS SER SEQRES 10 D 156 LEU SER GLU LEU LYS GLY HIS SER LEU MET ILE HIS LYS SEQRES 11 D 156 GLY GLY ASP ASN TYR SER ASP LYS PRO ALA PRO LEU GLY SEQRES 12 D 156 GLY GLY GLY ALA ARG PHE ALA CYS GLY VAL ILE GLU LYS HET ZN A 501 1 HET CU A 502 1 HET ZN B 503 1 HET CU B 504 1 HET ZN C 505 1 HET CU C 506 1 HET ZN D 507 1 HET CU D 508 1 HETNAM ZN ZINC ION HETNAM CU COPPER (II) ION FORMUL 5 ZN 4(ZN 2+) FORMUL 6 CU 4(CU 2+) FORMUL 13 HOH *178(H2 O) HELIX 1 1 ALA A 55 GLY A 59 5 5 HELIX 2 2 SER A 106 LYS A 111 5 6 HELIX 3 3 PRO A 134 GLY A 138 5 5 HELIX 4 4 ALA B 55 GLY B 59 5 5 HELIX 5 5 SER B 106 LYS B 111 5 6 HELIX 6 6 ALA B 133 GLY B 138 5 6 HELIX 7 7 ALA C 55 GLY C 59 5 5 HELIX 8 8 ALA C 133 GLY C 138 5 6 HELIX 9 9 ALA D 55 GLY D 59 5 5 HELIX 10 10 SER D 106 LEU D 110 5 5 HELIX 11 11 ALA D 133 GLY D 138 5 6 SHEET 1 A 7 PHE A 43 HIS A 46 0 SHEET 2 A 7 HIS A 113 HIS A 118 -1 O SER A 114 N HIS A 46 SHEET 3 A 7 ARG A 141 ILE A 147 -1 N PHE A 142 O ILE A 117 SHEET 4 A 7 THR A 3 ALA A 9B-1 O ASN A 9 N CYS A 144 SHEET 5 A 7 THR A 11 THR A 23 -1 N GLY A 12 O ASP A 9A SHEET 6 A 7 GLY A 26 LEU A 33 -1 N GLY A 26 O THR A 23 SHEET 7 A 7 LEU A 97 ALA A 99 -1 O LEU A 97 N PHE A 29 SHEET 1 B 2 GLY A 39 HIS A 41 0 SHEET 2 B 2 LEU A 85 VAL A 87 -1 N LEU A 85 O HIS A 41 SHEET 1 C 2 GLY A 53A LYS A 53C 0 SHEET 2 C 2 LYS A 53F VAL A 53H-1 O LYS A 53F N LYS A 53C SHEET 1 D 7 PHE B 43 HIS B 46 0 SHEET 2 D 7 SER B 114 HIS B 118 -1 O SER B 114 N HIS B 46 SHEET 3 D 7 ARG B 141 VAL B 146 -1 N PHE B 142 O ILE B 117 SHEET 4 D 7 THR B 3 ALA B 9B-1 N ASN B 9 O CYS B 144 SHEET 5 D 7 THR B 11 THR B 23 -1 N GLY B 12 O ASP B 9A SHEET 6 D 7 GLY B 26 LEU B 33 -1 O GLY B 26 N THR B 23 SHEET 7 D 7 LEU B 97 ALA B 99 -1 O LEU B 97 N PHE B 29 SHEET 1 E 2 GLY B 39 HIS B 41 0 SHEET 2 E 2 LEU B 85 VAL B 87 -1 N LEU B 85 O HIS B 41 SHEET 1 F 2 GLY B 53A MET B 53B 0 SHEET 2 F 2 GLU B 53G VAL B 53H-1 N VAL B 53H O GLY B 53A SHEET 1 G 7 PHE C 43 HIS C 46 0 SHEET 2 G 7 HIS C 113 HIS C 118 -1 O SER C 114 N HIS C 46 SHEET 3 G 7 ARG C 141 ILE C 147 -1 N PHE C 142 O ILE C 117 SHEET 4 G 7 LEU C 4 LEU C 9C-1 O ASN C 9 N CYS C 144 SHEET 5 G 7 GLY C 10 THR C 23 -1 O GLY C 10 N LEU C 9C SHEET 6 G 7 GLY C 26 LEU C 33 -1 N GLY C 26 O THR C 23 SHEET 7 G 7 LEU C 97 ALA C 99 -1 O LEU C 97 N PHE C 29 SHEET 1 H 2 GLY C 39 HIS C 41 0 SHEET 2 H 2 LEU C 85 VAL C 87 -1 N LEU C 85 O HIS C 41 SHEET 1 I 2 GLY C 53A LYS C 53C 0 SHEET 2 I 2 LYS C 53F VAL C 53H-1 O LYS C 53F N LYS C 53C SHEET 1 J 7 PHE D 43 HIS D 46 0 SHEET 2 J 7 SER D 114 HIS D 118 -1 O SER D 114 N HIS D 46 SHEET 3 J 7 ARG D 141 VAL D 146 -1 N PHE D 142 O ILE D 117 SHEET 4 J 7 THR D 3 LEU D 9C-1 N ASN D 9 O CYS D 144 SHEET 5 J 7 GLY D 10 THR D 23 -1 O GLY D 10 N LEU D 9C SHEET 6 J 7 GLY D 26 LEU D 33 -1 O GLY D 26 N THR D 23 SHEET 7 J 7 LEU D 97 ALA D 99 -1 O LEU D 97 N PHE D 29 SHEET 1 K 2 GLY D 39 HIS D 41 0 SHEET 2 K 2 LEU D 85 VAL D 87 -1 N LEU D 85 O HIS D 41 SHEET 1 L 2 GLY D 53A MET D 53B 0 SHEET 2 L 2 GLU D 53G VAL D 53H-1 N VAL D 53H O GLY D 53A SSBOND 1 CYS A 51 CYS A 144 1555 1555 2.10 SSBOND 2 CYS B 51 CYS B 144 1555 1555 1.71 SSBOND 3 CYS C 51 CYS C 144 1555 1555 1.98 SSBOND 4 CYS D 51 CYS D 144 1555 1555 1.69 LINK ZN ZN A 501 ND1 HIS A 61 1555 1555 2.11 LINK ZN ZN A 501 ND1 HIS A 69 1555 1555 1.92 LINK ZN ZN A 501 ND1 HIS A 78 1555 1555 2.05 LINK ZN ZN A 501 OD1 ASP A 81 1555 1555 2.11 LINK CU CU A 502 NE2 HIS A 46 1555 1555 2.02 LINK CU CU A 502 NE2 HIS A 61 1555 1555 2.47 LINK CU CU A 502 NE2 HIS A 118 1555 1555 1.92 LINK CU CU A 502 ND1 HIS A 44 1555 1555 2.29 LINK ZN ZN B 503 ND1 HIS B 61 1555 1555 2.19 LINK ZN ZN B 503 ND1 HIS B 78 1555 1555 2.33 LINK ZN ZN B 503 ND1 HIS B 69 1555 1555 2.02 LINK ZN ZN B 503 OD1 ASP B 81 1555 1555 2.06 LINK CU CU B 504 NE2 HIS B 118 1555 1555 1.95 LINK CU CU B 504 NE2 HIS B 61 1555 1555 2.50 LINK CU CU B 504 NE2 HIS B 46 1555 1555 2.16 LINK CU CU B 504 ND1 HIS B 44 1555 1555 2.20 LINK ZN ZN C 505 ND1 HIS C 78 1555 1555 1.96 LINK ZN ZN C 505 OD1 ASP C 81 1555 1555 2.00 LINK ZN ZN C 505 ND1 HIS C 69 1555 1555 1.98 LINK ZN ZN C 505 ND1 HIS C 61 1555 1555 1.94 LINK CU CU C 506 NE2 HIS C 61 1555 1555 2.67 LINK CU CU C 506 ND1 HIS C 44 1555 1555 2.21 LINK CU CU C 506 NE2 HIS C 118 1555 1555 1.93 LINK CU CU C 506 NE2 HIS C 46 1555 1555 2.09 LINK ZN ZN D 507 ND1 HIS D 78 1555 1555 2.30 LINK ZN ZN D 507 ND1 HIS D 61 1555 1555 2.28 LINK ZN ZN D 507 ND1 HIS D 69 1555 1555 2.02 LINK ZN ZN D 507 OD1 ASP D 81 1555 1555 1.98 LINK CU CU D 508 NE2 HIS D 46 1555 1555 2.20 LINK CU CU D 508 NE2 HIS D 118 1555 1555 1.95 LINK CU CU D 508 ND1 HIS D 44 1555 1555 2.04 CISPEP 1 LYS A 131 PRO A 132 0 0.52 CISPEP 2 LYS B 131 PRO B 132 0 0.04 CISPEP 3 LYS C 131 PRO C 132 0 0.33 CISPEP 4 LYS D 131 PRO D 132 0 0.80 SITE 1 AC1 4 HIS A 61 HIS A 69 HIS A 78 ASP A 81 SITE 1 AC2 4 HIS A 44 HIS A 46 HIS A 61 HIS A 118 SITE 1 AC3 4 HIS B 61 HIS B 69 HIS B 78 ASP B 81 SITE 1 AC4 4 HIS B 44 HIS B 46 HIS B 61 HIS B 118 SITE 1 AC5 4 HIS C 61 HIS C 69 HIS C 78 ASP C 81 SITE 1 AC6 4 HIS C 44 HIS C 46 HIS C 61 HIS C 118 SITE 1 AC7 4 HIS D 61 HIS D 69 HIS D 78 ASP D 81 SITE 1 AC8 4 HIS D 44 HIS D 46 HIS D 61 HIS D 118 CRYST1 142.140 40.659 114.254 90.00 107.73 90.00 C 1 2 1 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.007035 0.000000 0.002249 0.00000 SCALE2 0.000000 0.024595 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009189 0.00000