data_1ERM # _entry.id 1ERM # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1ERM RCSB RCSB010838 WWPDB D_1000010838 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1ERO '1ERO contains the same protein in complex with a different boronate inhibitor.' unspecified PDB 1ERQ '1ERQ contains the same protein in complex with a different boronate inhibitor.' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ERM _pdbx_database_status.recvd_initial_deposition_date 2000-04-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Ness, S.' 1 'Martin, R.' 2 'Kindler, A.M.' 3 'Paetzel, M.' 4 'Gold, M.' 5 'Jones, J.B.' 6 'Strynadka, N.C.J.' 7 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Structure-based design guides the improved efficacy of deacylation transition state analogue inhibitors of TEM-1 beta-Lactamase(,).' Biochemistry 39 5312 5321 2000 BICHAW US 0006-2960 0033 ? 10820001 10.1021/bi992505b 1 'Structure-based design of a potent transition state analogue for TEM-1 beta-lactamase' Nat.Struct.Biol. 3 688 695 1996 NSBIEW US 1072-8368 2024 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ness, S.' 1 primary 'Martin, R.' 2 primary 'Kindler, A.M.' 3 primary 'Paetzel, M.' 4 primary 'Gold, M.' 5 primary 'Jensen, S.E.' 6 primary 'Jones, J.B.' 7 primary 'Strynadka, N.C.' 8 1 'Strynadka, N.C.J.' 9 1 'Martin, R.' 10 1 'Jensen, S.E.' 11 1 'Gold, M.' 12 1 'Jones, J.B.' 13 # _cell.entry_id 1ERM _cell.length_a 63.03 _cell.length_b 89.06 _cell.length_c 42.16 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ERM _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'TEM-1 BETA-LACTAMASE' 28957.994 1 3.5.2.6 ? ? ? 2 non-polymer syn '1(R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHYL BORONIC ACID' 251.044 1 ? ? ? ? 3 water nat water 18.015 137 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAA MATTLRKLLTGELLTLASRQQLIDWMEA(BHD)KVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVI YTTGSQATMDERNRQIAEIGASLIKHW ; _entity_poly.pdbx_seq_one_letter_code_can ;HPETLVKVKDAEDQLGARVGYIELDLNSGKILESFRPEERFPMMSTFKVLLCGAVLSRVDAGQEQLGRRIHYSQNDLVEY SPVTEKHLTDGMTVRELCSAAITMSDNTAANLLLTTIGGPKELTAFLHNMGDHVTRLDRWEPELNEAIPNDERDTTMPAA MATTLRKLLTGELLTLASRQQLIDWMEADKVAGPLLRSALPAGWFIADKSGAGERGSRGIIAALGPDGKPSRIVVIYTTG SQATMDERNRQIAEIGASLIKHW ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 HIS n 1 2 PRO n 1 3 GLU n 1 4 THR n 1 5 LEU n 1 6 VAL n 1 7 LYS n 1 8 VAL n 1 9 LYS n 1 10 ASP n 1 11 ALA n 1 12 GLU n 1 13 ASP n 1 14 GLN n 1 15 LEU n 1 16 GLY n 1 17 ALA n 1 18 ARG n 1 19 VAL n 1 20 GLY n 1 21 TYR n 1 22 ILE n 1 23 GLU n 1 24 LEU n 1 25 ASP n 1 26 LEU n 1 27 ASN n 1 28 SER n 1 29 GLY n 1 30 LYS n 1 31 ILE n 1 32 LEU n 1 33 GLU n 1 34 SER n 1 35 PHE n 1 36 ARG n 1 37 PRO n 1 38 GLU n 1 39 GLU n 1 40 ARG n 1 41 PHE n 1 42 PRO n 1 43 MET n 1 44 MET n 1 45 SER n 1 46 THR n 1 47 PHE n 1 48 LYS n 1 49 VAL n 1 50 LEU n 1 51 LEU n 1 52 CYS n 1 53 GLY n 1 54 ALA n 1 55 VAL n 1 56 LEU n 1 57 SER n 1 58 ARG n 1 59 VAL n 1 60 ASP n 1 61 ALA n 1 62 GLY n 1 63 GLN n 1 64 GLU n 1 65 GLN n 1 66 LEU n 1 67 GLY n 1 68 ARG n 1 69 ARG n 1 70 ILE n 1 71 HIS n 1 72 TYR n 1 73 SER n 1 74 GLN n 1 75 ASN n 1 76 ASP n 1 77 LEU n 1 78 VAL n 1 79 GLU n 1 80 TYR n 1 81 SER n 1 82 PRO n 1 83 VAL n 1 84 THR n 1 85 GLU n 1 86 LYS n 1 87 HIS n 1 88 LEU n 1 89 THR n 1 90 ASP n 1 91 GLY n 1 92 MET n 1 93 THR n 1 94 VAL n 1 95 ARG n 1 96 GLU n 1 97 LEU n 1 98 CYS n 1 99 SER n 1 100 ALA n 1 101 ALA n 1 102 ILE n 1 103 THR n 1 104 MET n 1 105 SER n 1 106 ASP n 1 107 ASN n 1 108 THR n 1 109 ALA n 1 110 ALA n 1 111 ASN n 1 112 LEU n 1 113 LEU n 1 114 LEU n 1 115 THR n 1 116 THR n 1 117 ILE n 1 118 GLY n 1 119 GLY n 1 120 PRO n 1 121 LYS n 1 122 GLU n 1 123 LEU n 1 124 THR n 1 125 ALA n 1 126 PHE n 1 127 LEU n 1 128 HIS n 1 129 ASN n 1 130 MET n 1 131 GLY n 1 132 ASP n 1 133 HIS n 1 134 VAL n 1 135 THR n 1 136 ARG n 1 137 LEU n 1 138 ASP n 1 139 ARG n 1 140 TRP n 1 141 GLU n 1 142 PRO n 1 143 GLU n 1 144 LEU n 1 145 ASN n 1 146 GLU n 1 147 ALA n 1 148 ILE n 1 149 PRO n 1 150 ASN n 1 151 ASP n 1 152 GLU n 1 153 ARG n 1 154 ASP n 1 155 THR n 1 156 THR n 1 157 MET n 1 158 PRO n 1 159 ALA n 1 160 ALA n 1 161 MET n 1 162 ALA n 1 163 THR n 1 164 THR n 1 165 LEU n 1 166 ARG n 1 167 LYS n 1 168 LEU n 1 169 LEU n 1 170 THR n 1 171 GLY n 1 172 GLU n 1 173 LEU n 1 174 LEU n 1 175 THR n 1 176 LEU n 1 177 ALA n 1 178 SER n 1 179 ARG n 1 180 GLN n 1 181 GLN n 1 182 LEU n 1 183 ILE n 1 184 ASP n 1 185 TRP n 1 186 MET n 1 187 GLU n 1 188 ALA n 1 189 BHD n 1 190 LYS n 1 191 VAL n 1 192 ALA n 1 193 GLY n 1 194 PRO n 1 195 LEU n 1 196 LEU n 1 197 ARG n 1 198 SER n 1 199 ALA n 1 200 LEU n 1 201 PRO n 1 202 ALA n 1 203 GLY n 1 204 TRP n 1 205 PHE n 1 206 ILE n 1 207 ALA n 1 208 ASP n 1 209 LYS n 1 210 SER n 1 211 GLY n 1 212 ALA n 1 213 GLY n 1 214 GLU n 1 215 ARG n 1 216 GLY n 1 217 SER n 1 218 ARG n 1 219 GLY n 1 220 ILE n 1 221 ILE n 1 222 ALA n 1 223 ALA n 1 224 LEU n 1 225 GLY n 1 226 PRO n 1 227 ASP n 1 228 GLY n 1 229 LYS n 1 230 PRO n 1 231 SER n 1 232 ARG n 1 233 ILE n 1 234 VAL n 1 235 VAL n 1 236 ILE n 1 237 TYR n 1 238 THR n 1 239 THR n 1 240 GLY n 1 241 SER n 1 242 GLN n 1 243 ALA n 1 244 THR n 1 245 MET n 1 246 ASP n 1 247 GLU n 1 248 ARG n 1 249 ASN n 1 250 ARG n 1 251 GLN n 1 252 ILE n 1 253 ALA n 1 254 GLU n 1 255 ILE n 1 256 GLY n 1 257 ALA n 1 258 SER n 1 259 LEU n 1 260 ILE n 1 261 LYS n 1 262 HIS n 1 263 TRP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Escherichia _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 562 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type PLASMID _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PUC118 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code BLAT_ECOLI _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P62593 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ERM _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 263 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P62593 _struct_ref_seq.db_align_beg 24 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 286 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 26 _struct_ref_seq.pdbx_auth_seq_align_end 288 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 BHD 'L-peptide linking' n '(3S)-3-hydroxy-L-aspartic acid' 'BETA-HYDROXYASPARTIC ACID' 'C4 H7 N O5' 149.102 BJI non-polymer . '1(R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHYL BORONIC ACID' ? 'C11 H14 B N O5' 251.044 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ERM _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 39.77 _exptl_crystal.density_Matthews 2.04 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.0 _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'phosphate, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 298.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type 'XUONG-HAMLIN MULTIWIRE' _diffrn_detector.pdbx_collection_date 1996-01-01 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.5418 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength 1.5418 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ERM _reflns.observed_criterion_sigma_I 2 _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 20.0 _reflns.d_resolution_high 1.75 _reflns.number_obs 93628 _reflns.number_all 93628 _reflns.percent_possible_obs 92 _reflns.pdbx_Rmerge_I_obs 0.069 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 13.0 _reflns.B_iso_Wilson_estimate 19.0 _reflns.pdbx_redundancy 5 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.75 _reflns_shell.d_res_low 1.87 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 88.0 _reflns_shell.Rmerge_I_obs 0.139 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3 _reflns_shell.number_unique_all 2828 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1ERM _refine.ls_number_reflns_obs 22036 _refine.ls_number_reflns_all 22036 _refine.pdbx_ls_sigma_I 0 _refine.pdbx_ls_sigma_F 0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 20.0 _refine.ls_d_res_high 1.70 _refine.ls_percent_reflns_obs 82.0 _refine.ls_R_factor_obs 0.177 _refine.ls_R_factor_all 0.177 _refine.ls_R_factor_R_work 0.177 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 0 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ;bond length = 0.8 bond angle = 0.8 Try plane = 1.0 Gen. plane 1.0 bad contacts = 12 Temp. = 3 ; _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2028 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 18 _refine_hist.number_atoms_solvent 137 _refine_hist.number_atoms_total 2183 _refine_hist.d_res_high 1.70 _refine_hist.d_res_low 20.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function t_angle_deg 1.90 ? ? ? 'X-RAY DIFFRACTION' ? t_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? 'Angle distances' 0.021 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1ERM _struct.title ;X-RAY CRYSTAL STRUCTURE OF TEM-1 BETA LACTAMASE IN COMPLEX WITH A DESIGNED BORONIC ACID INHIBITOR (1R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHANE BORONIC ACID ; _struct.pdbx_descriptor 'TEM-1 BETA LACTAMASE (E.C. 3.5.2.6) IN COMPLEX WITH (1R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHANE BORONIC ACID' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ERM _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'beta-lactamase, structure-based design, boronate inhibitor, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 HIS A 1 ? GLY A 16 ? HIS A 26 GLY A 41 1 ? 16 HELX_P HELX_P2 2 THR A 46 ? ALA A 61 ? THR A 71 ALA A 86 1 ? 16 HELX_P HELX_P3 3 SER A 73 ? LEU A 77 ? SER A 98 LEU A 102 5 ? 5 HELX_P HELX_P4 4 VAL A 83 ? LEU A 88 ? VAL A 108 LEU A 113 5 ? 6 HELX_P HELX_P5 5 VAL A 94 ? SER A 105 ? VAL A 119 SER A 130 1 ? 12 HELX_P HELX_P6 6 ASP A 106 ? GLY A 118 ? ASP A 131 GLY A 143 1 ? 13 HELX_P HELX_P7 7 GLY A 119 ? MET A 130 ? GLY A 144 MET A 155 1 ? 12 HELX_P HELX_P8 8 PRO A 142 ? GLU A 146 ? PRO A 167 GLU A 171 5 ? 5 HELX_P HELX_P9 9 MET A 157 ? GLY A 171 ? MET A 182 GLY A 196 1 ? 15 HELX_P HELX_P10 10 THR A 175 ? ALA A 188 ? THR A 200 ALA A 213 1 ? 14 HELX_P HELX_P11 11 LEU A 195 ? LEU A 200 ? LEU A 220 LEU A 225 5 ? 6 HELX_P HELX_P12 12 THR A 244 ? HIS A 262 ? THR A 269 HIS A 287 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 52 SG ? ? ? 1_555 A CYS 98 SG ? ? A CYS 77 A CYS 123 1_555 ? ? ? ? ? ? ? 2.032 ? covale1 covale ? ? A SER 45 OG ? ? ? 1_555 B BJI . B ? ? A SER 70 A BJI 500 1_555 ? ? ? ? ? ? 'Covalent link with BJI' 1.387 ? covale2 covale ? ? A ALA 188 C ? ? ? 1_555 A BHD 189 N ? ? A ALA 213 A BHD 214 1_555 ? ? ? ? ? ? ? 1.314 ? covale3 covale ? ? A BHD 189 C ? ? ? 1_555 A LYS 190 N ? ? A BHD 214 A LYS 215 1_555 ? ? ? ? ? ? ? 1.341 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLU _struct_mon_prot_cis.label_seq_id 141 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLU _struct_mon_prot_cis.auth_seq_id 166 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 142 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 167 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.36 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ILE A 31 ? PHE A 35 ? ILE A 56 PHE A 60 A 2 ARG A 18 ? ASP A 25 ? ARG A 43 ASP A 50 A 3 ARG A 232 ? THR A 239 ? ARG A 257 THR A 264 A 4 ARG A 218 ? GLY A 225 ? ARG A 243 GLY A 250 A 5 PHE A 205 ? ALA A 212 ? PHE A 230 ALA A 237 B 1 PHE A 41 ? PRO A 42 ? PHE A 66 PRO A 67 B 2 THR A 155 ? THR A 156 ? THR A 180 THR A 181 C 1 ARG A 69 ? ILE A 70 ? ARG A 94 ILE A 95 C 2 MET A 92 ? THR A 93 ? MET A 117 THR A 118 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O PHE A 35 ? O PHE A 60 N TYR A 21 ? N TYR A 46 A 2 3 N LEU A 24 ? N LEU A 49 O ILE A 233 ? O ILE A 258 A 3 4 N THR A 238 ? N THR A 263 O ARG A 218 ? O ARG A 243 A 4 5 O GLY A 225 ? O GLY A 250 N PHE A 205 ? N PHE A 230 B 1 2 N PHE A 41 ? N PHE A 66 O THR A 156 ? O THR A 181 C 1 2 N ILE A 70 ? N ILE A 95 O MET A 92 ? O MET A 117 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 15 _struct_site.details 'BINDING SITE FOR RESIDUE BJI A 500' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 15 MET A 44 ? MET A 69 . ? 1_555 ? 2 AC1 15 SER A 45 ? SER A 70 . ? 1_555 ? 3 AC1 15 LYS A 48 ? LYS A 73 . ? 1_555 ? 4 AC1 15 TYR A 80 ? TYR A 105 . ? 1_555 ? 5 AC1 15 SER A 105 ? SER A 130 . ? 1_555 ? 6 AC1 15 ASN A 107 ? ASN A 132 . ? 1_555 ? 7 AC1 15 GLU A 141 ? GLU A 166 . ? 1_555 ? 8 AC1 15 ASN A 145 ? ASN A 170 . ? 1_555 ? 9 AC1 15 LYS A 209 ? LYS A 234 . ? 1_555 ? 10 AC1 15 SER A 210 ? SER A 235 . ? 1_555 ? 11 AC1 15 GLY A 211 ? GLY A 236 . ? 1_555 ? 12 AC1 15 ALA A 212 ? ALA A 237 . ? 1_555 ? 13 AC1 15 ARG A 218 ? ARG A 243 . ? 1_555 ? 14 AC1 15 HOH C . ? HOH A 304 . ? 1_555 ? 15 AC1 15 HOH C . ? HOH A 341 . ? 1_555 ? # _database_PDB_matrix.entry_id 1ERM _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ERM _atom_sites.fract_transf_matrix[1][1] 0.015865 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011228 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.023719 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol B C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 HIS 1 26 26 HIS HIS A . n A 1 2 PRO 2 27 27 PRO PRO A . n A 1 3 GLU 3 28 28 GLU GLU A . n A 1 4 THR 4 29 29 THR THR A . n A 1 5 LEU 5 30 30 LEU LEU A . n A 1 6 VAL 6 31 31 VAL VAL A . n A 1 7 LYS 7 32 32 LYS LYS A . n A 1 8 VAL 8 33 33 VAL VAL A . n A 1 9 LYS 9 34 34 LYS LYS A . n A 1 10 ASP 10 35 35 ASP ASP A . n A 1 11 ALA 11 36 36 ALA ALA A . n A 1 12 GLU 12 37 37 GLU GLU A . n A 1 13 ASP 13 38 38 ASP ASP A . n A 1 14 GLN 14 39 39 GLN GLN A . n A 1 15 LEU 15 40 40 LEU LEU A . n A 1 16 GLY 16 41 41 GLY GLY A . n A 1 17 ALA 17 42 42 ALA ALA A . n A 1 18 ARG 18 43 43 ARG ARG A . n A 1 19 VAL 19 44 44 VAL VAL A . n A 1 20 GLY 20 45 45 GLY GLY A . n A 1 21 TYR 21 46 46 TYR TYR A . n A 1 22 ILE 22 47 47 ILE ILE A . n A 1 23 GLU 23 48 48 GLU GLU A . n A 1 24 LEU 24 49 49 LEU LEU A . n A 1 25 ASP 25 50 50 ASP ASP A . n A 1 26 LEU 26 51 51 LEU LEU A . n A 1 27 ASN 27 52 52 ASN ASN A . n A 1 28 SER 28 53 53 SER SER A . n A 1 29 GLY 29 54 54 GLY GLY A . n A 1 30 LYS 30 55 55 LYS LYS A . n A 1 31 ILE 31 56 56 ILE ILE A . n A 1 32 LEU 32 57 57 LEU LEU A . n A 1 33 GLU 33 58 58 GLU GLU A . n A 1 34 SER 34 59 59 SER SER A . n A 1 35 PHE 35 60 60 PHE PHE A . n A 1 36 ARG 36 61 61 ARG ARG A . n A 1 37 PRO 37 62 62 PRO PRO A . n A 1 38 GLU 38 63 63 GLU GLU A . n A 1 39 GLU 39 64 64 GLU GLU A . n A 1 40 ARG 40 65 65 ARG ARG A . n A 1 41 PHE 41 66 66 PHE PHE A . n A 1 42 PRO 42 67 67 PRO PRO A . n A 1 43 MET 43 68 68 MET MET A . n A 1 44 MET 44 69 69 MET MET A . n A 1 45 SER 45 70 70 SER BJI A . n A 1 46 THR 46 71 71 THR THR A . n A 1 47 PHE 47 72 72 PHE PHE A . n A 1 48 LYS 48 73 73 LYS LYS A . n A 1 49 VAL 49 74 74 VAL VAL A . n A 1 50 LEU 50 75 75 LEU LEU A . n A 1 51 LEU 51 76 76 LEU LEU A . n A 1 52 CYS 52 77 77 CYS CYS A . n A 1 53 GLY 53 78 78 GLY GLY A . n A 1 54 ALA 54 79 79 ALA ALA A . n A 1 55 VAL 55 80 80 VAL VAL A . n A 1 56 LEU 56 81 81 LEU LEU A . n A 1 57 SER 57 82 82 SER SER A . n A 1 58 ARG 58 83 83 ARG ARG A . n A 1 59 VAL 59 84 84 VAL VAL A . n A 1 60 ASP 60 85 85 ASP ASP A . n A 1 61 ALA 61 86 86 ALA ALA A . n A 1 62 GLY 62 87 87 GLY GLY A . n A 1 63 GLN 63 88 88 GLN GLN A . n A 1 64 GLU 64 89 89 GLU GLU A . n A 1 65 GLN 65 90 90 GLN GLN A . n A 1 66 LEU 66 91 91 LEU LEU A . n A 1 67 GLY 67 92 92 GLY GLY A . n A 1 68 ARG 68 93 93 ARG ARG A . n A 1 69 ARG 69 94 94 ARG ARG A . n A 1 70 ILE 70 95 95 ILE ILE A . n A 1 71 HIS 71 96 96 HIS HIS A . n A 1 72 TYR 72 97 97 TYR TYR A . n A 1 73 SER 73 98 98 SER SER A . n A 1 74 GLN 74 99 99 GLN GLN A . n A 1 75 ASN 75 100 100 ASN ASN A . n A 1 76 ASP 76 101 101 ASP ASP A . n A 1 77 LEU 77 102 102 LEU LEU A . n A 1 78 VAL 78 103 103 VAL VAL A . n A 1 79 GLU 79 104 104 GLU GLU A . n A 1 80 TYR 80 105 105 TYR TYR A . n A 1 81 SER 81 106 106 SER SER A . n A 1 82 PRO 82 107 107 PRO PRO A . n A 1 83 VAL 83 108 108 VAL VAL A . n A 1 84 THR 84 109 109 THR THR A . n A 1 85 GLU 85 110 110 GLU GLU A . n A 1 86 LYS 86 111 111 LYS LYS A . n A 1 87 HIS 87 112 112 HIS HIS A . n A 1 88 LEU 88 113 113 LEU LEU A . n A 1 89 THR 89 114 114 THR THR A . n A 1 90 ASP 90 115 115 ASP ASP A . n A 1 91 GLY 91 116 116 GLY GLY A . n A 1 92 MET 92 117 117 MET MET A . n A 1 93 THR 93 118 118 THR THR A . n A 1 94 VAL 94 119 119 VAL VAL A . n A 1 95 ARG 95 120 120 ARG ARG A . n A 1 96 GLU 96 121 121 GLU GLU A . n A 1 97 LEU 97 122 122 LEU LEU A . n A 1 98 CYS 98 123 123 CYS CYS A . n A 1 99 SER 99 124 124 SER SER A . n A 1 100 ALA 100 125 125 ALA ALA A . n A 1 101 ALA 101 126 126 ALA ALA A . n A 1 102 ILE 102 127 127 ILE ILE A . n A 1 103 THR 103 128 128 THR THR A . n A 1 104 MET 104 129 129 MET MET A . n A 1 105 SER 105 130 130 SER SER A . n A 1 106 ASP 106 131 131 ASP ASP A . n A 1 107 ASN 107 132 132 ASN ASN A . n A 1 108 THR 108 133 133 THR THR A . n A 1 109 ALA 109 134 134 ALA ALA A . n A 1 110 ALA 110 135 135 ALA ALA A . n A 1 111 ASN 111 136 136 ASN ASN A . n A 1 112 LEU 112 137 137 LEU LEU A . n A 1 113 LEU 113 138 138 LEU LEU A . n A 1 114 LEU 114 139 139 LEU LEU A . n A 1 115 THR 115 140 140 THR THR A . n A 1 116 THR 116 141 141 THR THR A . n A 1 117 ILE 117 142 142 ILE ILE A . n A 1 118 GLY 118 143 143 GLY GLY A . n A 1 119 GLY 119 144 144 GLY GLY A . n A 1 120 PRO 120 145 145 PRO PRO A . n A 1 121 LYS 121 146 146 LYS LYS A . n A 1 122 GLU 122 147 147 GLU GLU A . n A 1 123 LEU 123 148 148 LEU LEU A . n A 1 124 THR 124 149 149 THR THR A . n A 1 125 ALA 125 150 150 ALA ALA A . n A 1 126 PHE 126 151 151 PHE PHE A . n A 1 127 LEU 127 152 152 LEU LEU A . n A 1 128 HIS 128 153 153 HIS HIS A . n A 1 129 ASN 129 154 154 ASN ASN A . n A 1 130 MET 130 155 155 MET MET A . n A 1 131 GLY 131 156 156 GLY GLY A . n A 1 132 ASP 132 157 157 ASP ASP A . n A 1 133 HIS 133 158 158 HIS HIS A . n A 1 134 VAL 134 159 159 VAL VAL A . n A 1 135 THR 135 160 160 THR THR A . n A 1 136 ARG 136 161 161 ARG ARG A . n A 1 137 LEU 137 162 162 LEU LEU A . n A 1 138 ASP 138 163 163 ASP ASP A . n A 1 139 ARG 139 164 164 ARG ARG A . n A 1 140 TRP 140 165 165 TRP TRP A . n A 1 141 GLU 141 166 166 GLU GLU A . n A 1 142 PRO 142 167 167 PRO PRO A . n A 1 143 GLU 143 168 168 GLU GLU A . n A 1 144 LEU 144 169 169 LEU LEU A . n A 1 145 ASN 145 170 170 ASN ASN A . n A 1 146 GLU 146 171 171 GLU GLU A . n A 1 147 ALA 147 172 172 ALA ALA A . n A 1 148 ILE 148 173 173 ILE ILE A . n A 1 149 PRO 149 174 174 PRO PRO A . n A 1 150 ASN 150 175 175 ASN ASN A . n A 1 151 ASP 151 176 176 ASP ASP A . n A 1 152 GLU 152 177 177 GLU GLU A . n A 1 153 ARG 153 178 178 ARG ARG A . n A 1 154 ASP 154 179 179 ASP ASP A . n A 1 155 THR 155 180 180 THR THR A . n A 1 156 THR 156 181 181 THR THR A . n A 1 157 MET 157 182 182 MET MET A . n A 1 158 PRO 158 183 183 PRO PRO A . n A 1 159 ALA 159 184 184 ALA ALA A . n A 1 160 ALA 160 185 185 ALA ALA A . n A 1 161 MET 161 186 186 MET MET A . n A 1 162 ALA 162 187 187 ALA ALA A . n A 1 163 THR 163 188 188 THR THR A . n A 1 164 THR 164 189 189 THR THR A . n A 1 165 LEU 165 190 190 LEU LEU A . n A 1 166 ARG 166 191 191 ARG ARG A . n A 1 167 LYS 167 192 192 LYS LYS A . n A 1 168 LEU 168 193 193 LEU LEU A . n A 1 169 LEU 169 194 194 LEU LEU A . n A 1 170 THR 170 195 195 THR THR A . n A 1 171 GLY 171 196 196 GLY GLY A . n A 1 172 GLU 172 197 197 GLU GLU A . n A 1 173 LEU 173 198 198 LEU LEU A . n A 1 174 LEU 174 199 199 LEU LEU A . n A 1 175 THR 175 200 200 THR THR A . n A 1 176 LEU 176 201 201 LEU LEU A . n A 1 177 ALA 177 202 202 ALA ALA A . n A 1 178 SER 178 203 203 SER SER A . n A 1 179 ARG 179 204 204 ARG ARG A . n A 1 180 GLN 180 205 205 GLN GLN A . n A 1 181 GLN 181 206 206 GLN GLN A . n A 1 182 LEU 182 207 207 LEU LEU A . n A 1 183 ILE 183 208 208 ILE ILE A . n A 1 184 ASP 184 209 209 ASP ASP A . n A 1 185 TRP 185 210 210 TRP TRP A . n A 1 186 MET 186 211 211 MET MET A . n A 1 187 GLU 187 212 212 GLU GLU A . n A 1 188 ALA 188 213 213 ALA ALA A . n A 1 189 BHD 189 214 214 BHD ASB A . n A 1 190 LYS 190 215 215 LYS LYS A . n A 1 191 VAL 191 216 216 VAL VAL A . n A 1 192 ALA 192 217 217 ALA ALA A . n A 1 193 GLY 193 218 218 GLY GLY A . n A 1 194 PRO 194 219 219 PRO PRO A . n A 1 195 LEU 195 220 220 LEU LEU A . n A 1 196 LEU 196 221 221 LEU LEU A . n A 1 197 ARG 197 222 222 ARG ARG A . n A 1 198 SER 198 223 223 SER SER A . n A 1 199 ALA 199 224 224 ALA ALA A . n A 1 200 LEU 200 225 225 LEU LEU A . n A 1 201 PRO 201 226 226 PRO PRO A . n A 1 202 ALA 202 227 227 ALA ALA A . n A 1 203 GLY 203 228 228 GLY GLY A . n A 1 204 TRP 204 229 229 TRP TRP A . n A 1 205 PHE 205 230 230 PHE PHE A . n A 1 206 ILE 206 231 231 ILE ILE A . n A 1 207 ALA 207 232 232 ALA ALA A . n A 1 208 ASP 208 233 233 ASP ASP A . n A 1 209 LYS 209 234 234 LYS LYS A . n A 1 210 SER 210 235 235 SER SER A . n A 1 211 GLY 211 236 236 GLY GLY A . n A 1 212 ALA 212 237 237 ALA ALA A . n A 1 213 GLY 213 238 238 GLY GLY A . n A 1 214 GLU 214 239 239 GLU GLU A . n A 1 215 ARG 215 240 240 ARG ARG A . n A 1 216 GLY 216 241 241 GLY GLY A . n A 1 217 SER 217 242 242 SER SER A . n A 1 218 ARG 218 243 243 ARG ARG A . n A 1 219 GLY 219 244 244 GLY GLY A . n A 1 220 ILE 220 245 245 ILE ILE A . n A 1 221 ILE 221 246 246 ILE ILE A . n A 1 222 ALA 222 247 247 ALA ALA A . n A 1 223 ALA 223 248 248 ALA ALA A . n A 1 224 LEU 224 249 249 LEU LEU A . n A 1 225 GLY 225 250 250 GLY GLY A . n A 1 226 PRO 226 251 251 PRO PRO A . n A 1 227 ASP 227 252 252 ASP ASP A . n A 1 228 GLY 228 253 253 GLY GLY A . n A 1 229 LYS 229 254 254 LYS LYS A . n A 1 230 PRO 230 255 255 PRO PRO A . n A 1 231 SER 231 256 256 SER SER A . n A 1 232 ARG 232 257 257 ARG ARG A . n A 1 233 ILE 233 258 258 ILE ILE A . n A 1 234 VAL 234 259 259 VAL VAL A . n A 1 235 VAL 235 260 260 VAL VAL A . n A 1 236 ILE 236 261 261 ILE ILE A . n A 1 237 TYR 237 262 262 TYR TYR A . n A 1 238 THR 238 263 263 THR THR A . n A 1 239 THR 239 264 264 THR THR A . n A 1 240 GLY 240 265 265 GLY GLY A . n A 1 241 SER 241 266 266 SER SER A . n A 1 242 GLN 242 267 267 GLN GLN A . n A 1 243 ALA 243 268 268 ALA ALA A . n A 1 244 THR 244 269 269 THR THR A . n A 1 245 MET 245 270 270 MET MET A . n A 1 246 ASP 246 271 271 ASP ASP A . n A 1 247 GLU 247 272 272 GLU GLU A . n A 1 248 ARG 248 273 273 ARG ARG A . n A 1 249 ASN 249 274 274 ASN ASN A . n A 1 250 ARG 250 275 275 ARG ARG A . n A 1 251 GLN 251 276 276 GLN GLN A . n A 1 252 ILE 252 277 277 ILE ILE A . n A 1 253 ALA 253 278 278 ALA ALA A . n A 1 254 GLU 254 279 279 GLU GLU A . n A 1 255 ILE 255 280 280 ILE ILE A . n A 1 256 GLY 256 281 281 GLY GLY A . n A 1 257 ALA 257 282 282 ALA ALA A . n A 1 258 SER 258 283 283 SER SER A . n A 1 259 LEU 259 284 284 LEU LEU A . n A 1 260 ILE 260 285 285 ILE ILE A . n A 1 261 LYS 261 286 286 LYS LYS A . n A 1 262 HIS 262 287 287 HIS HIS A . n A 1 263 TRP 263 288 288 TRP TRP A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A SER 45 A SER 70 ? SER 'Covalent link with BJI' 2 A BHD 189 A BHD 214 ? ASP '(3S)-3-HYDROXY-L-ASPARTIC ACID' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-10 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2012-06-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Non-polymer description' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SDMS 'data collection' . ? 1 SDMS 'data reduction' . ? 2 MLPHARE phasing . ? 3 TNT refinement . ? 4 SDMS 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A GLU 48 ? ? CG A GLU 48 ? ? 1.395 1.517 -0.122 0.019 N 2 1 CD A LYS 146 ? ? CE A LYS 146 ? ? 1.668 1.508 0.160 0.025 N 3 1 CG1 A ILE 173 ? ? CD1 A ILE 173 ? ? 3.056 1.500 1.556 0.069 N 4 1 CA A ALA 184 ? ? CB A ALA 184 ? ? 1.668 1.520 0.148 0.021 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 CB A ILE 173 ? ? CG1 A ILE 173 ? ? CD1 A ILE 173 ? ? 51.87 113.90 -62.03 2.80 N 2 1 CB A ASP 271 ? ? CG A ASP 271 ? ? OD1 A ASP 271 ? ? 124.13 118.30 5.83 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 MET A 69 ? ? 55.82 -147.57 2 1 ASN A 175 ? ? 74.82 -1.16 3 1 LEU A 220 ? ? -100.83 -122.58 4 1 SER A 256 ? ? -143.07 -3.65 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 105 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.070 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '1(R)-1-ACETAMIDO-2-(3-CARBOXYPHENYL)ETHYL BORONIC ACID' BJI 3 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BJI 1 500 70 BJI BJI A . C 3 HOH 1 300 300 HOH WAT A . C 3 HOH 2 301 301 HOH WAT A . C 3 HOH 3 302 302 HOH WAT A . C 3 HOH 4 303 303 HOH WAT A . C 3 HOH 5 304 304 HOH WAT A . C 3 HOH 6 305 305 HOH WAT A . C 3 HOH 7 306 306 HOH WAT A . C 3 HOH 8 307 307 HOH WAT A . C 3 HOH 9 308 308 HOH WAT A . C 3 HOH 10 309 309 HOH WAT A . C 3 HOH 11 310 310 HOH WAT A . C 3 HOH 12 311 311 HOH WAT A . C 3 HOH 13 312 312 HOH WAT A . C 3 HOH 14 314 314 HOH WAT A . C 3 HOH 15 316 316 HOH WAT A . C 3 HOH 16 317 317 HOH WAT A . C 3 HOH 17 318 318 HOH WAT A . C 3 HOH 18 319 319 HOH WAT A . C 3 HOH 19 320 320 HOH WAT A . C 3 HOH 20 321 321 HOH WAT A . C 3 HOH 21 322 322 HOH WAT A . C 3 HOH 22 323 323 HOH WAT A . C 3 HOH 23 324 324 HOH WAT A . C 3 HOH 24 325 325 HOH WAT A . C 3 HOH 25 326 326 HOH WAT A . C 3 HOH 26 327 327 HOH WAT A . C 3 HOH 27 328 328 HOH WAT A . C 3 HOH 28 329 329 HOH WAT A . C 3 HOH 29 330 330 HOH WAT A . C 3 HOH 30 333 333 HOH WAT A . C 3 HOH 31 334 334 HOH WAT A . C 3 HOH 32 336 336 HOH WAT A . C 3 HOH 33 337 337 HOH WAT A . C 3 HOH 34 339 339 HOH WAT A . C 3 HOH 35 341 341 HOH WAT A . C 3 HOH 36 342 342 HOH WAT A . C 3 HOH 37 346 346 HOH WAT A . C 3 HOH 38 348 348 HOH WAT A . C 3 HOH 39 350 350 HOH WAT A . C 3 HOH 40 351 351 HOH WAT A . C 3 HOH 41 352 352 HOH WAT A . C 3 HOH 42 354 354 HOH WAT A . C 3 HOH 43 355 355 HOH WAT A . C 3 HOH 44 356 356 HOH WAT A . C 3 HOH 45 357 357 HOH WAT A . C 3 HOH 46 358 358 HOH WAT A . C 3 HOH 47 359 359 HOH WAT A . C 3 HOH 48 360 360 HOH WAT A . C 3 HOH 49 361 361 HOH WAT A . C 3 HOH 50 362 362 HOH WAT A . C 3 HOH 51 363 363 HOH WAT A . C 3 HOH 52 364 364 HOH WAT A . C 3 HOH 53 365 365 HOH WAT A . C 3 HOH 54 368 368 HOH WAT A . C 3 HOH 55 369 369 HOH WAT A . C 3 HOH 56 370 370 HOH WAT A . C 3 HOH 57 371 371 HOH WAT A . C 3 HOH 58 372 372 HOH WAT A . C 3 HOH 59 373 373 HOH WAT A . C 3 HOH 60 374 374 HOH WAT A . C 3 HOH 61 375 375 HOH WAT A . C 3 HOH 62 376 376 HOH WAT A . C 3 HOH 63 377 377 HOH WAT A . C 3 HOH 64 378 378 HOH WAT A . C 3 HOH 65 380 380 HOH WAT A . C 3 HOH 66 381 381 HOH WAT A . C 3 HOH 67 382 382 HOH WAT A . C 3 HOH 68 383 383 HOH WAT A . C 3 HOH 69 384 384 HOH WAT A . C 3 HOH 70 386 386 HOH WAT A . C 3 HOH 71 387 387 HOH WAT A . C 3 HOH 72 388 388 HOH WAT A . C 3 HOH 73 389 389 HOH WAT A . C 3 HOH 74 390 390 HOH WAT A . C 3 HOH 75 392 392 HOH WAT A . C 3 HOH 76 394 394 HOH WAT A . C 3 HOH 77 399 399 HOH WAT A . C 3 HOH 78 400 400 HOH WAT A . C 3 HOH 79 401 401 HOH WAT A . C 3 HOH 80 402 402 HOH WAT A . C 3 HOH 81 403 403 HOH WAT A . C 3 HOH 82 404 404 HOH WAT A . C 3 HOH 83 406 406 HOH WAT A . C 3 HOH 84 408 408 HOH WAT A . C 3 HOH 85 411 411 HOH WAT A . C 3 HOH 86 412 412 HOH WAT A . C 3 HOH 87 413 413 HOH WAT A . C 3 HOH 88 414 414 HOH WAT A . C 3 HOH 89 417 417 HOH WAT A . C 3 HOH 90 418 418 HOH WAT A . C 3 HOH 91 419 419 HOH WAT A . C 3 HOH 92 420 420 HOH WAT A . C 3 HOH 93 421 421 HOH WAT A . C 3 HOH 94 422 422 HOH WAT A . C 3 HOH 95 424 424 HOH WAT A . C 3 HOH 96 425 425 HOH WAT A . C 3 HOH 97 428 428 HOH WAT A . C 3 HOH 98 430 430 HOH WAT A . C 3 HOH 99 431 431 HOH WAT A . C 3 HOH 100 432 432 HOH WAT A . C 3 HOH 101 433 433 HOH WAT A . C 3 HOH 102 435 435 HOH WAT A . C 3 HOH 103 436 436 HOH WAT A . C 3 HOH 104 437 437 HOH WAT A . C 3 HOH 105 438 438 HOH WAT A . C 3 HOH 106 439 439 HOH WAT A . C 3 HOH 107 440 440 HOH WAT A . C 3 HOH 108 441 441 HOH WAT A . C 3 HOH 109 442 442 HOH WAT A . C 3 HOH 110 444 444 HOH WAT A . C 3 HOH 111 447 447 HOH WAT A . C 3 HOH 112 454 454 HOH WAT A . C 3 HOH 113 455 455 HOH WAT A . C 3 HOH 114 458 458 HOH WAT A . C 3 HOH 115 459 459 HOH WAT A . C 3 HOH 116 460 460 HOH WAT A . C 3 HOH 117 461 461 HOH WAT A . C 3 HOH 118 464 464 HOH WAT A . C 3 HOH 119 466 466 HOH WAT A . C 3 HOH 120 467 467 HOH WAT A . C 3 HOH 121 468 468 HOH WAT A . C 3 HOH 122 469 469 HOH WAT A . C 3 HOH 123 470 470 HOH WAT A . C 3 HOH 124 471 471 HOH WAT A . C 3 HOH 125 472 472 HOH WAT A . C 3 HOH 126 473 473 HOH WAT A . C 3 HOH 127 474 474 HOH WAT A . C 3 HOH 128 475 475 HOH WAT A . C 3 HOH 129 476 476 HOH WAT A . C 3 HOH 130 477 477 HOH WAT A . C 3 HOH 131 478 478 HOH WAT A . C 3 HOH 132 479 479 HOH WAT A . C 3 HOH 133 480 480 HOH WAT A . C 3 HOH 134 481 481 HOH WAT A . C 3 HOH 135 482 482 HOH WAT A . C 3 HOH 136 484 484 HOH WAT A . C 3 HOH 137 485 485 HOH WAT A . #