data_1ES4 # _entry.id 1ES4 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.351 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1ES4 pdb_00001es4 10.2210/pdb1es4/pdb RCSB RCSB010847 ? ? WWPDB D_1000010847 ? ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 1SKF '1SKF contains the wild type protein.' unspecified PDB 1EQS 'K38H MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE' unspecified PDB 1ES2 'S96A MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE' unspecified PDB 1ES3 'C98A MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE' unspecified PDB 1ES4 'C98N MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE' unspecified PDB 1ES5 'S216A MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE' unspecified PDB 1ESI 'R248L MUTANT OF STREPTOMYCES K15 DD-TRANSPEPTIDASE' unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1ES4 _pdbx_database_status.recvd_initial_deposition_date 2000-04-07 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Fonze, E.' 1 'Charlier, P.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Catalytic mechanism of the Streptomyces K15 DD-transpeptidase/penicillin-binding protein probed by site-directed mutagenesis and structural analysis. ; Biochemistry 42 2895 2906 2003 BICHAW US 0006-2960 0033 ? 12627955 10.1021/bi027256x 1 'The Crystal Structure of a Penicilloyl-Serine Transferase of Intermediate Penicillin Sensitivity' J.Biol.Chem. 274 21853 21860 1999 JBCHA3 US 0021-9258 0071 ? ? 10.1074/jbc.274.31.21853 2 'Crystallization and X-Ray Diffraction Study of the Streptomyces K15 Penicillin-Binding Dd-Transpeptidase' J.Mol.Biol. 241 295 297 1994 JMOBAK UK 0022-2836 0070 ? ? 10.1006/jmbi.1994.1504 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Rhazi, N.' 1 ? primary 'Charlier, P.' 2 ? primary 'Dehareng, D.' 3 ? primary 'Engher, D.' 4 ? primary 'Vermeire, M.' 5 ? primary 'Frere, J.M.' 6 ? primary 'Nguyen-Disteche, M.' 7 ? primary 'Fonze, E.' 8 ? 1 'Fonze, E.' 9 ? 1 'Vermeire, M.' 10 ? 1 'Nguyen-Disteche, M.' 11 ? 1 'Brasseur, R.' 12 ? 1 'Charlier, P.' 13 ? 2 'Englebert, S.' 14 ? 2 'Charlier, P.' 15 ? 2 'Fonze, E.' 16 ? 2 ;To'Th, Y. ; 17 ? 2 'Vermeire, M.' 18 ? 2 'Van Beeumen, J.' 19 ? 2 'Grandchamps, J.' 20 ? 2 'Hoffmann, K.' 21 ? 2 'Leyh-Bouille, M.' 22 ? 2 'Nguyen-Disteche, M.' 23 ? 2 'Ghuysen, J.-M.' 24 ? # _cell.entry_id 1ES4 _cell.length_a 46.044 _cell.length_b 53.739 _cell.length_c 107.958 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1ES4 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man DD-TRANSPEPTIDASE 27519.279 1 3.4.16.4 C98N ? ? 2 water nat water 18.015 144 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'D-ALANYL-D-ALANINE CARBOXYPEPTIDASE, DD-PEPTIDASE' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVG DKVTVRQLLYGLMLPSGNDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPARESDATKIMNYGFAL ; _entity_poly.pdbx_seq_one_letter_code_can ;VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANNASQAHLIVG DKVTVRQLLYGLMLPSGNDAAYALADKYGSGSTRAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRDLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPARESDATKIMNYGFAL ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 THR n 1 3 LYS n 1 4 PRO n 1 5 THR n 1 6 ILE n 1 7 ALA n 1 8 ALA n 1 9 VAL n 1 10 GLY n 1 11 GLY n 1 12 TYR n 1 13 ALA n 1 14 MET n 1 15 ASN n 1 16 ASN n 1 17 GLY n 1 18 THR n 1 19 GLY n 1 20 THR n 1 21 THR n 1 22 LEU n 1 23 TYR n 1 24 THR n 1 25 LYS n 1 26 ALA n 1 27 ALA n 1 28 ASP n 1 29 THR n 1 30 ARG n 1 31 ARG n 1 32 SER n 1 33 THR n 1 34 GLY n 1 35 SER n 1 36 THR n 1 37 THR n 1 38 LYS n 1 39 ILE n 1 40 MET n 1 41 THR n 1 42 ALA n 1 43 LYS n 1 44 VAL n 1 45 VAL n 1 46 LEU n 1 47 ALA n 1 48 GLN n 1 49 SER n 1 50 ASN n 1 51 LEU n 1 52 ASN n 1 53 LEU n 1 54 ASP n 1 55 ALA n 1 56 LYS n 1 57 VAL n 1 58 THR n 1 59 ILE n 1 60 GLN n 1 61 LYS n 1 62 ALA n 1 63 TYR n 1 64 SER n 1 65 ASP n 1 66 TYR n 1 67 VAL n 1 68 VAL n 1 69 ALA n 1 70 ASN n 1 71 ASN n 1 72 ALA n 1 73 SER n 1 74 GLN n 1 75 ALA n 1 76 HIS n 1 77 LEU n 1 78 ILE n 1 79 VAL n 1 80 GLY n 1 81 ASP n 1 82 LYS n 1 83 VAL n 1 84 THR n 1 85 VAL n 1 86 ARG n 1 87 GLN n 1 88 LEU n 1 89 LEU n 1 90 TYR n 1 91 GLY n 1 92 LEU n 1 93 MET n 1 94 LEU n 1 95 PRO n 1 96 SER n 1 97 GLY n 1 98 ASN n 1 99 ASP n 1 100 ALA n 1 101 ALA n 1 102 TYR n 1 103 ALA n 1 104 LEU n 1 105 ALA n 1 106 ASP n 1 107 LYS n 1 108 TYR n 1 109 GLY n 1 110 SER n 1 111 GLY n 1 112 SER n 1 113 THR n 1 114 ARG n 1 115 ALA n 1 116 ALA n 1 117 ARG n 1 118 VAL n 1 119 LYS n 1 120 SER n 1 121 PHE n 1 122 ILE n 1 123 GLY n 1 124 LYS n 1 125 MET n 1 126 ASN n 1 127 THR n 1 128 ALA n 1 129 ALA n 1 130 THR n 1 131 ASN n 1 132 LEU n 1 133 GLY n 1 134 LEU n 1 135 HIS n 1 136 ASN n 1 137 THR n 1 138 HIS n 1 139 PHE n 1 140 ASP n 1 141 SER n 1 142 PHE n 1 143 ASP n 1 144 GLY n 1 145 ILE n 1 146 GLY n 1 147 ASN n 1 148 GLY n 1 149 ALA n 1 150 ASN n 1 151 TYR n 1 152 SER n 1 153 THR n 1 154 PRO n 1 155 ARG n 1 156 ASP n 1 157 LEU n 1 158 THR n 1 159 LYS n 1 160 ILE n 1 161 ALA n 1 162 SER n 1 163 SER n 1 164 ALA n 1 165 MET n 1 166 LYS n 1 167 ASN n 1 168 SER n 1 169 THR n 1 170 PHE n 1 171 ARG n 1 172 THR n 1 173 VAL n 1 174 VAL n 1 175 LYS n 1 176 THR n 1 177 LYS n 1 178 ALA n 1 179 TYR n 1 180 THR n 1 181 ALA n 1 182 LYS n 1 183 THR n 1 184 VAL n 1 185 THR n 1 186 LYS n 1 187 THR n 1 188 GLY n 1 189 SER n 1 190 ILE n 1 191 ARG n 1 192 THR n 1 193 MET n 1 194 ASP n 1 195 THR n 1 196 TRP n 1 197 LYS n 1 198 ASN n 1 199 THR n 1 200 ASN n 1 201 GLY n 1 202 LEU n 1 203 LEU n 1 204 SER n 1 205 SER n 1 206 TYR n 1 207 SER n 1 208 GLY n 1 209 ALA n 1 210 ILE n 1 211 GLY n 1 212 VAL n 1 213 LYS n 1 214 THR n 1 215 GLY n 1 216 SER n 1 217 GLY n 1 218 PRO n 1 219 GLU n 1 220 ALA n 1 221 LYS n 1 222 TYR n 1 223 CYS n 1 224 LEU n 1 225 VAL n 1 226 PHE n 1 227 ALA n 1 228 ALA n 1 229 THR n 1 230 ARG n 1 231 GLY n 1 232 GLY n 1 233 LYS n 1 234 THR n 1 235 VAL n 1 236 ILE n 1 237 GLY n 1 238 THR n 1 239 VAL n 1 240 LEU n 1 241 ALA n 1 242 SER n 1 243 THR n 1 244 SER n 1 245 ILE n 1 246 PRO n 1 247 ALA n 1 248 ARG n 1 249 GLU n 1 250 SER n 1 251 ASP n 1 252 ALA n 1 253 THR n 1 254 LYS n 1 255 ILE n 1 256 MET n 1 257 ASN n 1 258 TYR n 1 259 GLY n 1 260 PHE n 1 261 ALA n 1 262 LEU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus Streptomyces _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain K15 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Streptomyces sp.' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 1958 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Streptomyces lividans TK24' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 457428 _entity_src_gen.host_org_genus Streptomyces _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Streptomyces lividans' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain TK24 _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code DACX_STRSK _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P39042 _struct_ref.pdbx_align_begin 30 _struct_ref.pdbx_seq_one_letter_code ;VTKPTIAAVGGYAMNNGTGTTLYTKAADTRRSTGSTTKIMTAKVVLAQSNLNLDAKVTIQKAYSDYVVANKPSQAHLIVG DKVTVRQLLYGLMLPSGCDAAYALADKYGSGSQAAARVKSFIGKMNTAATNLGLHNTHFDSFDGIGNGANYSTPRHLTKI ASSAMKNSTFRTVVKTKAYTAKTVTKTGSIRTMDTWKNTNGLLSSYSGAIGVKTGSGPEAKYCLVFAATRGGKTVIGTVL ASTSIPARESDATKIMNYGFAL ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1ES4 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 262 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P39042 _struct_ref_seq.db_align_beg 30 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 291 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 262 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1ES4 ASN A 71 ? UNP P39042 LYS 100 conflict 71 1 1 1ES4 ALA A 72 ? UNP P39042 PRO 101 conflict 72 2 1 1ES4 ASN A 98 ? UNP P39042 CYS 127 'engineered mutation' 98 3 1 1ES4 THR A 113 ? UNP P39042 GLN 142 conflict 113 4 1 1ES4 ARG A 114 ? UNP P39042 ALA 143 conflict 114 5 1 1ES4 ASP A 156 ? UNP P39042 HIS 185 conflict 156 6 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1ES4 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 49.31 _exptl_crystal.density_Matthews 2.43 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.2 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'Tris 0.1M, PEG 6K 30%, NaCl 0.4M, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 288 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-07-06 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.375 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LURE BEAMLINE D41A' _diffrn_source.pdbx_wavelength 1.375 _diffrn_source.pdbx_synchrotron_site LURE _diffrn_source.pdbx_synchrotron_beamline D41A _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1ES4 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 22.69 _reflns.d_resolution_high 1.88 _reflns.number_obs 20385 _reflns.number_all 20385 _reflns.percent_possible_obs 89.8 _reflns.pdbx_Rmerge_I_obs 0.061 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 8.74 _reflns.B_iso_Wilson_estimate 13.6 _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.88 _reflns_shell.d_res_low 1.93 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 95.6 _reflns_shell.Rmerge_I_obs 0.182 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.7 _reflns_shell.number_unique_all 1634 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1ES4 _refine.ls_number_reflns_obs 18050 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF 100000.00 _refine.pdbx_data_cutoff_low_absF 0.10 _refine.ls_d_res_low 8.00 _refine.ls_d_res_high 1.90 _refine.ls_percent_reflns_obs 84.1 _refine.ls_R_factor_obs 0.179 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.179 _refine.ls_R_factor_R_free 0.225 _refine.ls_R_factor_R_free_error 0.005 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10.0 _refine.ls_number_reflns_R_free 1810 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 17.0 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1ES4 _refine_analyze.Luzzati_coordinate_error_obs 0.18 _refine_analyze.Luzzati_sigma_a_obs 0.16 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.24 _refine_analyze.Luzzati_sigma_a_free 0.16 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1899 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 144 _refine_hist.number_atoms_total 2043 _refine_hist.d_res_high 1.90 _refine_hist.d_res_low 8.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.006 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.2 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 25.7 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 0.63 ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.54 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.25 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.83 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 4.10 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 10 _refine_ls_shell.d_res_high 1.90 _refine_ls_shell.d_res_low 1.97 _refine_ls_shell.number_reflns_R_work 1509 _refine_ls_shell.R_factor_R_work 0.238 _refine_ls_shell.percent_reflns_obs 79.5 _refine_ls_shell.R_factor_R_free 0.254 _refine_ls_shell.R_factor_R_free_error 0.020 _refine_ls_shell.percent_reflns_R_free 9.6 _refine_ls_shell.number_reflns_R_free 160 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 TIP3P.PARAMETER TIP3P.TOPOLOGY 'X-RAY DIFFRACTION' # _struct.entry_id 1ES4 _struct.title 'C98N mutant of streptomyces K15 DD-transpeptidase' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1ES4 _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'PENICILLIN-BINDING, DD-TRANSPEPTIDASE, SERINE PEPTIDASE, BETA-LACTAMASE, HYDROLASE CARBOXYPEPTIDASE, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details 'The biological assembly is a monomer' _struct_biol.pdbx_parent_biol_id ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 GLY A 34 ? THR A 36 ? GLY A 34 THR A 36 5 ? 3 HELX_P HELX_P2 2 THR A 37 ? ALA A 47 ? THR A 37 ALA A 47 1 ? 11 HELX_P HELX_P3 3 GLN A 60 ? ASN A 71 ? GLN A 60 ASN A 71 1 ? 12 HELX_P HELX_P4 4 VAL A 85 ? LEU A 94 ? VAL A 85 LEU A 94 1 ? 10 HELX_P HELX_P5 5 GLY A 97 ? GLY A 109 ? GLY A 97 GLY A 109 1 ? 13 HELX_P HELX_P6 6 THR A 113 ? LEU A 132 ? THR A 113 LEU A 132 1 ? 20 HELX_P HELX_P7 7 THR A 153 ? MET A 165 ? THR A 153 MET A 165 1 ? 13 HELX_P HELX_P8 8 ASN A 167 ? LYS A 175 ? ASN A 167 LYS A 175 1 ? 9 HELX_P HELX_P9 9 GLY A 201 ? TYR A 206 ? GLY A 201 TYR A 206 1 ? 6 HELX_P HELX_P10 10 SER A 244 ? LEU A 262 ? SER A 244 LEU A 262 1 ? 19 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id GLY _struct_mon_prot_cis.label_seq_id 211 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id GLY _struct_mon_prot_cis.auth_seq_id 211 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 VAL _struct_mon_prot_cis.pdbx_label_seq_id_2 212 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 VAL _struct_mon_prot_cis.pdbx_auth_seq_id_2 212 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle 3.17 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 5 ? B ? 2 ? C ? 2 ? D ? 2 ? E ? 2 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel B 1 2 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel E 1 2 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 21 ? LYS A 25 ? THR A 21 LYS A 25 A 2 GLY A 10 ? ASN A 15 ? GLY A 10 ASN A 15 A 3 LYS A 233 ? SER A 242 ? LYS A 233 SER A 242 A 4 LYS A 221 ? ARG A 230 ? LYS A 221 ARG A 230 A 5 ALA A 209 ? GLY A 217 ? ALA A 209 GLY A 217 B 1 ARG A 31 ? SER A 32 ? ARG A 31 SER A 32 B 2 TYR A 151 ? SER A 152 ? TYR A 151 SER A 152 C 1 LYS A 56 ? THR A 58 ? LYS A 56 THR A 58 C 2 LYS A 82 ? THR A 84 ? LYS A 82 THR A 84 D 1 ALA A 178 ? TYR A 179 ? ALA A 178 TYR A 179 D 2 TRP A 196 ? LYS A 197 ? TRP A 196 LYS A 197 E 1 LYS A 182 ? VAL A 184 ? LYS A 182 VAL A 184 E 2 ILE A 190 ? THR A 192 ? ILE A 190 THR A 192 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O LYS A 25 ? O LYS A 25 N GLY A 11 ? N GLY A 11 A 2 3 N MET A 14 ? N MET A 14 O ILE A 236 ? O ILE A 236 A 3 4 N SER A 242 ? N SER A 242 O TYR A 222 ? O TYR A 222 A 4 5 O ALA A 227 ? O ALA A 227 N ILE A 210 ? N ILE A 210 B 1 2 N ARG A 31 ? N ARG A 31 O SER A 152 ? O SER A 152 C 1 2 O VAL A 57 ? O VAL A 57 N VAL A 83 ? N VAL A 83 D 1 2 O TYR A 179 ? O TYR A 179 N TRP A 196 ? N TRP A 196 E 1 2 O THR A 183 ? O THR A 183 N ARG A 191 ? N ARG A 191 # _database_PDB_matrix.entry_id 1ES4 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1ES4 _atom_sites.fract_transf_matrix[1][1] 0.021718 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018608 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.009263 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 ? ? ? A . n A 1 2 THR 2 2 ? ? ? A . n A 1 3 LYS 3 3 3 LYS LYS A . n A 1 4 PRO 4 4 4 PRO PRO A . n A 1 5 THR 5 5 5 THR THR A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 ALA 7 7 7 ALA ALA A . n A 1 8 ALA 8 8 8 ALA ALA A . n A 1 9 VAL 9 9 9 VAL VAL A . n A 1 10 GLY 10 10 10 GLY GLY A . n A 1 11 GLY 11 11 11 GLY GLY A . n A 1 12 TYR 12 12 12 TYR TYR A . n A 1 13 ALA 13 13 13 ALA ALA A . n A 1 14 MET 14 14 14 MET MET A . n A 1 15 ASN 15 15 15 ASN ASN A . n A 1 16 ASN 16 16 16 ASN ASN A . n A 1 17 GLY 17 17 17 GLY GLY A . n A 1 18 THR 18 18 18 THR THR A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 THR 20 20 20 THR THR A . n A 1 21 THR 21 21 21 THR THR A . n A 1 22 LEU 22 22 22 LEU LEU A . n A 1 23 TYR 23 23 23 TYR TYR A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 ALA 27 27 27 ALA ALA A . n A 1 28 ASP 28 28 28 ASP ASP A . n A 1 29 THR 29 29 29 THR THR A . n A 1 30 ARG 30 30 30 ARG ARG A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 THR 33 33 33 THR THR A . n A 1 34 GLY 34 34 34 GLY GLY A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 THR 36 36 36 THR THR A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 ILE 39 39 39 ILE ILE A . n A 1 40 MET 40 40 40 MET MET A . n A 1 41 THR 41 41 41 THR THR A . n A 1 42 ALA 42 42 42 ALA ALA A . n A 1 43 LYS 43 43 43 LYS LYS A . n A 1 44 VAL 44 44 44 VAL VAL A . n A 1 45 VAL 45 45 45 VAL VAL A . n A 1 46 LEU 46 46 46 LEU LEU A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 GLN 48 48 48 GLN GLN A . n A 1 49 SER 49 49 49 SER SER A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 LEU 51 51 51 LEU LEU A . n A 1 52 ASN 52 52 52 ASN ASN A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASP 54 54 54 ASP ASP A . n A 1 55 ALA 55 55 55 ALA ALA A . n A 1 56 LYS 56 56 56 LYS LYS A . n A 1 57 VAL 57 57 57 VAL VAL A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 ILE 59 59 59 ILE ILE A . n A 1 60 GLN 60 60 60 GLN GLN A . n A 1 61 LYS 61 61 61 LYS LYS A . n A 1 62 ALA 62 62 62 ALA ALA A . n A 1 63 TYR 63 63 63 TYR TYR A . n A 1 64 SER 64 64 64 SER SER A . n A 1 65 ASP 65 65 65 ASP ASP A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 VAL 67 67 67 VAL VAL A . n A 1 68 VAL 68 68 68 VAL VAL A . n A 1 69 ALA 69 69 69 ALA ALA A . n A 1 70 ASN 70 70 70 ASN ASN A . n A 1 71 ASN 71 71 71 ASN ASN A . n A 1 72 ALA 72 72 72 ALA ALA A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 GLN 74 74 74 GLN GLN A . n A 1 75 ALA 75 75 75 ALA ALA A . n A 1 76 HIS 76 76 76 HIS HIS A . n A 1 77 LEU 77 77 77 LEU LEU A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 GLY 80 80 80 GLY GLY A . n A 1 81 ASP 81 81 81 ASP ASP A . n A 1 82 LYS 82 82 82 LYS LYS A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 VAL 85 85 85 VAL VAL A . n A 1 86 ARG 86 86 86 ARG ARG A . n A 1 87 GLN 87 87 87 GLN GLN A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 TYR 90 90 90 TYR TYR A . n A 1 91 GLY 91 91 91 GLY GLY A . n A 1 92 LEU 92 92 92 LEU LEU A . n A 1 93 MET 93 93 93 MET MET A . n A 1 94 LEU 94 94 94 LEU LEU A . n A 1 95 PRO 95 95 95 PRO PRO A . n A 1 96 SER 96 96 96 SER SER A . n A 1 97 GLY 97 97 97 GLY GLY A . n A 1 98 ASN 98 98 98 ASN ASN A . n A 1 99 ASP 99 99 99 ASP ASP A . n A 1 100 ALA 100 100 100 ALA ALA A . n A 1 101 ALA 101 101 101 ALA ALA A . n A 1 102 TYR 102 102 102 TYR TYR A . n A 1 103 ALA 103 103 103 ALA ALA A . n A 1 104 LEU 104 104 104 LEU LEU A . n A 1 105 ALA 105 105 105 ALA ALA A . n A 1 106 ASP 106 106 106 ASP ASP A . n A 1 107 LYS 107 107 107 LYS LYS A . n A 1 108 TYR 108 108 108 TYR TYR A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 SER 110 110 110 SER SER A . n A 1 111 GLY 111 111 111 GLY GLY A . n A 1 112 SER 112 112 112 SER SER A . n A 1 113 THR 113 113 113 THR THR A . n A 1 114 ARG 114 114 114 ARG ARG A . n A 1 115 ALA 115 115 115 ALA ALA A . n A 1 116 ALA 116 116 116 ALA ALA A . n A 1 117 ARG 117 117 117 ARG ARG A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 LYS 119 119 119 LYS LYS A . n A 1 120 SER 120 120 120 SER SER A . n A 1 121 PHE 121 121 121 PHE PHE A . n A 1 122 ILE 122 122 122 ILE ILE A . n A 1 123 GLY 123 123 123 GLY GLY A . n A 1 124 LYS 124 124 124 LYS LYS A . n A 1 125 MET 125 125 125 MET MET A . n A 1 126 ASN 126 126 126 ASN ASN A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 ALA 128 128 128 ALA ALA A . n A 1 129 ALA 129 129 129 ALA ALA A . n A 1 130 THR 130 130 130 THR THR A . n A 1 131 ASN 131 131 131 ASN ASN A . n A 1 132 LEU 132 132 132 LEU LEU A . n A 1 133 GLY 133 133 133 GLY GLY A . n A 1 134 LEU 134 134 134 LEU LEU A . n A 1 135 HIS 135 135 135 HIS HIS A . n A 1 136 ASN 136 136 136 ASN ASN A . n A 1 137 THR 137 137 137 THR THR A . n A 1 138 HIS 138 138 138 HIS HIS A . n A 1 139 PHE 139 139 139 PHE PHE A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 ASP 143 143 143 ASP ASP A . n A 1 144 GLY 144 144 144 GLY GLY A . n A 1 145 ILE 145 145 145 ILE ILE A . n A 1 146 GLY 146 146 ? ? ? A . n A 1 147 ASN 147 147 ? ? ? A . n A 1 148 GLY 148 148 ? ? ? A . n A 1 149 ALA 149 149 149 ALA ALA A . n A 1 150 ASN 150 150 150 ASN ASN A . n A 1 151 TYR 151 151 151 TYR TYR A . n A 1 152 SER 152 152 152 SER SER A . n A 1 153 THR 153 153 153 THR THR A . n A 1 154 PRO 154 154 154 PRO PRO A . n A 1 155 ARG 155 155 155 ARG ARG A . n A 1 156 ASP 156 156 156 ASP ASP A . n A 1 157 LEU 157 157 157 LEU LEU A . n A 1 158 THR 158 158 158 THR THR A . n A 1 159 LYS 159 159 159 LYS LYS A . n A 1 160 ILE 160 160 160 ILE ILE A . n A 1 161 ALA 161 161 161 ALA ALA A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 SER 163 163 163 SER SER A . n A 1 164 ALA 164 164 164 ALA ALA A . n A 1 165 MET 165 165 165 MET MET A . n A 1 166 LYS 166 166 166 LYS LYS A . n A 1 167 ASN 167 167 167 ASN ASN A . n A 1 168 SER 168 168 168 SER SER A . n A 1 169 THR 169 169 169 THR THR A . n A 1 170 PHE 170 170 170 PHE PHE A . n A 1 171 ARG 171 171 171 ARG ARG A . n A 1 172 THR 172 172 172 THR THR A . n A 1 173 VAL 173 173 173 VAL VAL A . n A 1 174 VAL 174 174 174 VAL VAL A . n A 1 175 LYS 175 175 175 LYS LYS A . n A 1 176 THR 176 176 176 THR THR A . n A 1 177 LYS 177 177 177 LYS LYS A . n A 1 178 ALA 178 178 178 ALA ALA A . n A 1 179 TYR 179 179 179 TYR TYR A . n A 1 180 THR 180 180 180 THR THR A . n A 1 181 ALA 181 181 181 ALA ALA A . n A 1 182 LYS 182 182 182 LYS LYS A . n A 1 183 THR 183 183 183 THR THR A . n A 1 184 VAL 184 184 184 VAL VAL A . n A 1 185 THR 185 185 185 THR THR A . n A 1 186 LYS 186 186 186 LYS LYS A . n A 1 187 THR 187 187 187 THR THR A . n A 1 188 GLY 188 188 188 GLY GLY A . n A 1 189 SER 189 189 189 SER SER A . n A 1 190 ILE 190 190 190 ILE ILE A . n A 1 191 ARG 191 191 191 ARG ARG A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 MET 193 193 193 MET MET A . n A 1 194 ASP 194 194 194 ASP ASP A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 TRP 196 196 196 TRP TRP A . n A 1 197 LYS 197 197 197 LYS LYS A . n A 1 198 ASN 198 198 198 ASN ASN A . n A 1 199 THR 199 199 199 THR THR A . n A 1 200 ASN 200 200 200 ASN ASN A . n A 1 201 GLY 201 201 201 GLY GLY A . n A 1 202 LEU 202 202 202 LEU LEU A . n A 1 203 LEU 203 203 203 LEU LEU A . n A 1 204 SER 204 204 204 SER SER A . n A 1 205 SER 205 205 205 SER SER A . n A 1 206 TYR 206 206 206 TYR TYR A . n A 1 207 SER 207 207 207 SER SER A . n A 1 208 GLY 208 208 208 GLY GLY A . n A 1 209 ALA 209 209 209 ALA ALA A . n A 1 210 ILE 210 210 210 ILE ILE A . n A 1 211 GLY 211 211 211 GLY GLY A . n A 1 212 VAL 212 212 212 VAL VAL A . n A 1 213 LYS 213 213 213 LYS LYS A . n A 1 214 THR 214 214 214 THR THR A . n A 1 215 GLY 215 215 215 GLY GLY A . n A 1 216 SER 216 216 216 SER SER A . n A 1 217 GLY 217 217 217 GLY GLY A . n A 1 218 PRO 218 218 218 PRO PRO A . n A 1 219 GLU 219 219 219 GLU GLU A . n A 1 220 ALA 220 220 220 ALA ALA A . n A 1 221 LYS 221 221 221 LYS LYS A . n A 1 222 TYR 222 222 222 TYR TYR A . n A 1 223 CYS 223 223 223 CYS CYS A . n A 1 224 LEU 224 224 224 LEU LEU A . n A 1 225 VAL 225 225 225 VAL VAL A . n A 1 226 PHE 226 226 226 PHE PHE A . n A 1 227 ALA 227 227 227 ALA ALA A . n A 1 228 ALA 228 228 228 ALA ALA A . n A 1 229 THR 229 229 229 THR THR A . n A 1 230 ARG 230 230 230 ARG ARG A . n A 1 231 GLY 231 231 231 GLY GLY A . n A 1 232 GLY 232 232 232 GLY GLY A . n A 1 233 LYS 233 233 233 LYS LYS A . n A 1 234 THR 234 234 234 THR THR A . n A 1 235 VAL 235 235 235 VAL VAL A . n A 1 236 ILE 236 236 236 ILE ILE A . n A 1 237 GLY 237 237 237 GLY GLY A . n A 1 238 THR 238 238 238 THR THR A . n A 1 239 VAL 239 239 239 VAL VAL A . n A 1 240 LEU 240 240 240 LEU LEU A . n A 1 241 ALA 241 241 241 ALA ALA A . n A 1 242 SER 242 242 242 SER SER A . n A 1 243 THR 243 243 243 THR THR A . n A 1 244 SER 244 244 244 SER SER A . n A 1 245 ILE 245 245 245 ILE ILE A . n A 1 246 PRO 246 246 246 PRO PRO A . n A 1 247 ALA 247 247 247 ALA ALA A . n A 1 248 ARG 248 248 248 ARG ARG A . n A 1 249 GLU 249 249 249 GLU GLU A . n A 1 250 SER 250 250 250 SER SER A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 ALA 252 252 252 ALA ALA A . n A 1 253 THR 253 253 253 THR THR A . n A 1 254 LYS 254 254 254 LYS LYS A . n A 1 255 ILE 255 255 255 ILE ILE A . n A 1 256 MET 256 256 256 MET MET A . n A 1 257 ASN 257 257 257 ASN ASN A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 GLY 259 259 259 GLY GLY A . n A 1 260 PHE 260 260 260 PHE PHE A . n A 1 261 ALA 261 261 261 ALA ALA A . n A 1 262 LEU 262 262 262 LEU LEU A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 HOH 1 300 300 HOH WAT A . B 2 HOH 2 301 301 HOH WAT A . B 2 HOH 3 302 302 HOH WAT A . B 2 HOH 4 303 303 HOH WAT A . B 2 HOH 5 304 304 HOH WAT A . B 2 HOH 6 305 305 HOH WAT A . B 2 HOH 7 306 306 HOH WAT A . B 2 HOH 8 307 307 HOH WAT A . B 2 HOH 9 308 308 HOH WAT A . B 2 HOH 10 309 309 HOH WAT A . B 2 HOH 11 310 310 HOH WAT A . B 2 HOH 12 311 311 HOH WAT A . B 2 HOH 13 312 312 HOH WAT A . B 2 HOH 14 313 313 HOH WAT A . B 2 HOH 15 314 314 HOH WAT A . B 2 HOH 16 315 315 HOH WAT A . B 2 HOH 17 316 316 HOH WAT A . B 2 HOH 18 317 317 HOH WAT A . B 2 HOH 19 318 318 HOH WAT A . B 2 HOH 20 319 319 HOH WAT A . B 2 HOH 21 320 320 HOH WAT A . B 2 HOH 22 321 321 HOH WAT A . B 2 HOH 23 322 322 HOH WAT A . B 2 HOH 24 323 323 HOH WAT A . B 2 HOH 25 324 324 HOH WAT A . B 2 HOH 26 325 325 HOH WAT A . B 2 HOH 27 326 326 HOH WAT A . B 2 HOH 28 327 327 HOH WAT A . B 2 HOH 29 328 328 HOH WAT A . B 2 HOH 30 329 329 HOH WAT A . B 2 HOH 31 330 330 HOH WAT A . B 2 HOH 32 331 331 HOH WAT A . B 2 HOH 33 332 332 HOH WAT A . B 2 HOH 34 333 333 HOH WAT A . B 2 HOH 35 334 334 HOH WAT A . B 2 HOH 36 335 335 HOH WAT A . B 2 HOH 37 336 336 HOH WAT A . B 2 HOH 38 337 337 HOH WAT A . B 2 HOH 39 338 338 HOH WAT A . B 2 HOH 40 339 339 HOH WAT A . B 2 HOH 41 340 340 HOH WAT A . B 2 HOH 42 341 341 HOH WAT A . B 2 HOH 43 342 342 HOH WAT A . B 2 HOH 44 343 343 HOH WAT A . B 2 HOH 45 344 344 HOH WAT A . B 2 HOH 46 345 345 HOH WAT A . B 2 HOH 47 346 346 HOH WAT A . B 2 HOH 48 347 347 HOH WAT A . B 2 HOH 49 348 348 HOH WAT A . B 2 HOH 50 349 349 HOH WAT A . B 2 HOH 51 350 350 HOH WAT A . B 2 HOH 52 351 351 HOH WAT A . B 2 HOH 53 352 352 HOH WAT A . B 2 HOH 54 353 353 HOH WAT A . B 2 HOH 55 354 354 HOH WAT A . B 2 HOH 56 355 355 HOH WAT A . B 2 HOH 57 356 356 HOH WAT A . B 2 HOH 58 357 357 HOH WAT A . B 2 HOH 59 358 358 HOH WAT A . B 2 HOH 60 359 359 HOH WAT A . B 2 HOH 61 360 360 HOH WAT A . B 2 HOH 62 361 361 HOH WAT A . B 2 HOH 63 363 363 HOH WAT A . B 2 HOH 64 364 364 HOH WAT A . B 2 HOH 65 365 365 HOH WAT A . B 2 HOH 66 366 366 HOH WAT A . B 2 HOH 67 367 367 HOH WAT A . B 2 HOH 68 368 368 HOH WAT A . B 2 HOH 69 369 369 HOH WAT A . B 2 HOH 70 370 370 HOH WAT A . B 2 HOH 71 371 371 HOH WAT A . B 2 HOH 72 372 372 HOH WAT A . B 2 HOH 73 374 374 HOH WAT A . B 2 HOH 74 375 375 HOH WAT A . B 2 HOH 75 377 377 HOH WAT A . B 2 HOH 76 378 378 HOH WAT A . B 2 HOH 77 379 379 HOH WAT A . B 2 HOH 78 380 380 HOH WAT A . B 2 HOH 79 382 382 HOH WAT A . B 2 HOH 80 384 384 HOH WAT A . B 2 HOH 81 385 385 HOH WAT A . B 2 HOH 82 386 386 HOH WAT A . B 2 HOH 83 387 387 HOH WAT A . B 2 HOH 84 389 389 HOH WAT A . B 2 HOH 85 390 390 HOH WAT A . B 2 HOH 86 391 391 HOH WAT A . B 2 HOH 87 392 392 HOH WAT A . B 2 HOH 88 393 393 HOH WAT A . B 2 HOH 89 394 394 HOH WAT A . B 2 HOH 90 395 395 HOH WAT A . B 2 HOH 91 396 396 HOH WAT A . B 2 HOH 92 397 397 HOH WAT A . B 2 HOH 93 398 398 HOH WAT A . B 2 HOH 94 399 399 HOH WAT A . B 2 HOH 95 400 400 HOH WAT A . B 2 HOH 96 401 401 HOH WAT A . B 2 HOH 97 402 402 HOH WAT A . B 2 HOH 98 404 404 HOH WAT A . B 2 HOH 99 406 406 HOH WAT A . B 2 HOH 100 407 407 HOH WAT A . B 2 HOH 101 408 408 HOH WAT A . B 2 HOH 102 409 409 HOH WAT A . B 2 HOH 103 410 410 HOH WAT A . B 2 HOH 104 411 411 HOH WAT A . B 2 HOH 105 412 412 HOH WAT A . B 2 HOH 106 415 415 HOH WAT A . B 2 HOH 107 416 416 HOH WAT A . B 2 HOH 108 417 417 HOH WAT A . B 2 HOH 109 419 419 HOH WAT A . B 2 HOH 110 420 420 HOH WAT A . B 2 HOH 111 421 421 HOH WAT A . B 2 HOH 112 422 422 HOH WAT A . B 2 HOH 113 423 423 HOH WAT A . B 2 HOH 114 424 424 HOH WAT A . B 2 HOH 115 425 425 HOH WAT A . B 2 HOH 116 426 426 HOH WAT A . B 2 HOH 117 427 427 HOH WAT A . B 2 HOH 118 428 428 HOH WAT A . B 2 HOH 119 429 429 HOH WAT A . B 2 HOH 120 430 430 HOH WAT A . B 2 HOH 121 431 431 HOH WAT A . B 2 HOH 122 432 432 HOH WAT A . B 2 HOH 123 434 434 HOH WAT A . B 2 HOH 124 436 436 HOH WAT A . B 2 HOH 125 437 437 HOH WAT A . B 2 HOH 126 438 438 HOH WAT A . B 2 HOH 127 440 440 HOH WAT A . B 2 HOH 128 449 449 HOH WAT A . B 2 HOH 129 450 450 HOH WAT A . B 2 HOH 130 451 451 HOH WAT A . B 2 HOH 131 452 452 HOH WAT A . B 2 HOH 132 453 453 HOH WAT A . B 2 HOH 133 454 454 HOH WAT A . B 2 HOH 134 455 455 HOH WAT A . B 2 HOH 135 456 456 HOH WAT A . B 2 HOH 136 457 457 HOH WAT A . B 2 HOH 137 458 458 HOH WAT A . B 2 HOH 138 459 459 HOH WAT A . B 2 HOH 139 460 460 HOH WAT A . B 2 HOH 140 461 461 HOH WAT A . B 2 HOH 141 462 462 HOH WAT A . B 2 HOH 142 463 463 HOH WAT A . B 2 HOH 143 464 464 HOH WAT A . B 2 HOH 144 465 465 HOH WAT A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-03 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2021-11-03 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Source and taxonomy' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Refinement description' 5 5 'Structure model' 'Database references' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' database_2 3 5 'Structure model' struct_ref_seq_dif # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_software.name' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_struct_ref_seq_dif.details' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal MOSFLM 'data reduction' . ? 1 SCALA 'data scaling' . ? 2 TRUNCATE 'data reduction' . ? 3 AMoRE phasing . ? 4 X-PLOR refinement 3.851 ? 5 CCP4 'data scaling' '(SCALA' ? 6 TRUNCATE 'data scaling' . ? 7 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 HOH _pdbx_validate_close_contact.auth_seq_id_1 310 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 419 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 1.47 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 355 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 359 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_655 _pdbx_validate_symm_contact.dist 1.77 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LYS A 25 ? ? -161.46 102.70 2 1 SER A 152 ? ? -163.72 -167.54 3 1 VAL A 212 ? ? -125.27 -54.24 4 1 LYS A 221 ? ? 68.88 -141.14 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 1 ? A VAL 1 2 1 Y 1 A THR 2 ? A THR 2 3 1 Y 1 A GLY 146 ? A GLY 146 4 1 Y 1 A ASN 147 ? A ASN 147 5 1 Y 1 A GLY 148 ? A GLY 148 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name water _pdbx_entity_nonpoly.comp_id HOH #