data_1EVV # _entry.id 1EVV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1EVV NDB TR0002 RCSB RCSB010940 WWPDB D_1000010940 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4TNA . unspecified PDB 1TRA . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1EVV _pdbx_database_status.recvd_initial_deposition_date 2000-04-20 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jovine, L.' 1 'Djordjevic, S.' 2 'Rhodes, D.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals.' J.Mol.Biol. 301 401 414 2000 JMOBAK UK 0022-2836 0070 ? 10926517 10.1006/jmbi.2000.3950 1 'High-resolution X-ray diffraction studies on a pure species of transfer RNA' J.Mol.Biol. 72 99 101 1972 JMOBAK UK 0022-2836 0070 ? ? ? 2 'Structure of yeast phenylalanine tRNA at 3 A resolution' Nature 250 546 551 1974 NATUAS UK 0028-0836 0006 ? ? ? 3 'Structure of yeast phenylalanine transfer RNA at 2.5 A resolution' Proc.Natl.Acad.Sci.USA 72 4414 4418 1975 PNASA6 US 0027-8424 0040 ? ? ? 4 'Further refinement of the structure of yeast tRNA Phe' J.Mol.Biol. 124 523 534 1978 JMOBAK UK 0022-2836 0070 ? ? ? 5 ;Restrained refinement of the monoclinic form of yeast phenylalanine transfer RNA. Temperature factors and dynamics, coordinated waters, and base-pair propeller twist angles ; Biochemistry 25 4868 4878 1986 BICHAW US 0006-2960 0033 ? ? ? 6 'Restrained refinement of two crystalline forms of yeast aspartic acid and phenylalanine transfer RNA crystals' 'Acta Crystallogr.,Sect.A' 44 112 123 1988 ACACEQ DK 0108-7673 0621 ? ? 10.1107/S010876738700446X # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Jovine, L.' 1 primary 'Djordjevic, S.' 2 primary 'Rhodes, D.' 3 1 'Ladner, J.E.' 4 1 'Finch, J.T.' 5 1 'Klug, A.' 6 1 'Clark, B.F.' 7 2 'Robertus, J.D.' 8 2 'Ladner, J.E.' 9 2 'Finch, J.T.' 10 2 'Rhodes, D.' 11 2 'Brown, R.S.' 12 2 'Clark, B.F.C.' 13 2 'Klug, A.' 14 3 'Ladner, J.E.' 15 3 'Jack, A.' 16 3 'Robertus, J.D.' 17 3 'Brown, R.S.' 18 3 'Rhodes, D.' 19 3 'Clark, B.F.' 20 3 'Klug, A.' 21 4 'Hingerty, B.' 22 4 'Brown, R.S.' 23 4 'Jack, A.' 24 5 'Westhof, E.' 25 5 'Sundaralingam, M.' 26 6 'Westhof, E.' 27 6 'Dumas, P.' 28 6 'Moras, D.' 29 # _cell.entry_id 1EVV _cell.length_a 55.252 _cell.length_b 32.988 _cell.length_c 61.882 _cell.angle_alpha 90.00 _cell.angle_beta 90.38 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1EVV _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting monoclinic _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'PHENYLALANINE TRANSFER RNA' 24890.121 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 10 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 220 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCGGAUUUA(2MG)CUCAG(H2U)(H2U)GGGAGAGC(M2G)CCAGA(OMC)U(OMG)AA(YG)A(PSU)(5MC)UGGAG (7MG)UC(5MC)UGUG(5MU)(PSU)CG(1MA)UCCACAGAAUUCGCACCA ; _entity_poly.pdbx_seq_one_letter_code_can GCGGAUUUAGCUCAGUUGGGAGAGCGCCAGACUGAAGAUCUGGAGGUCCUGUGUUCGAUCCACAGAAUUCGCACCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 G n 1 4 G n 1 5 A n 1 6 U n 1 7 U n 1 8 U n 1 9 A n 1 10 2MG n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 H2U n 1 17 H2U n 1 18 G n 1 19 G n 1 20 G n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 M2G n 1 27 C n 1 28 C n 1 29 A n 1 30 G n 1 31 A n 1 32 OMC n 1 33 U n 1 34 OMG n 1 35 A n 1 36 A n 1 37 YG n 1 38 A n 1 39 PSU n 1 40 5MC n 1 41 U n 1 42 G n 1 43 G n 1 44 A n 1 45 G n 1 46 7MG n 1 47 U n 1 48 C n 1 49 5MC n 1 50 U n 1 51 G n 1 52 U n 1 53 G n 1 54 5MU n 1 55 PSU n 1 56 C n 1 57 G n 1 58 1MA n 1 59 U n 1 60 C n 1 61 C n 1 62 A n 1 63 C n 1 64 A n 1 65 G n 1 66 A n 1 67 A n 1 68 U n 1 69 U n 1 70 C n 1 71 G n 1 72 C n 1 73 A n 1 74 C n 1 75 C n 1 76 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name ? _entity_src_nat.pdbx_organism_scientific Saccharomyces _entity_src_nat.pdbx_ncbi_taxonomy_id 4930 _entity_src_nat.genus Saccharomyces _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details ? # _struct_ref.id 1 _struct_ref.db_name GB _struct_ref.db_code M10263 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_db_accession 176479 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1EVV _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 176479 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 2MG 'RNA linking' n "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 5MU 'RNA linking' n ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; ? 'C10 H15 N2 O9 P' 338.208 7MG 'RNA linking' n "7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H18 N5 O8 P' 379.263 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 HOH non-polymer . WATER ? 'H2 O' 18.015 M2G 'RNA linking' n "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C12 H18 N5 O8 P' 391.274 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 OMC 'RNA linking' n "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 OMG 'RNA linking' n "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 YG 'RNA linking' n WYBUTOSINE 'Y-BASE; 1H-IMIDAZO(1,2-ALPHA)PURINE-7-BUTANOIC ACID,4,9-DIHYDRO-ALPHA-((METHOXYCARBONYL)AMINO)-4,6-DIMETHYL-9-OXO-METHYL ESTER' 'C21 H29 N6 O12 P' 588.462 # _exptl.entry_id 1EVV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 59.7 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method DIALYSIS _exptl_crystal_grow.temp 277.15 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.5 _exptl_crystal_grow.pdbx_details ;CRYSTALS GROWN AT 277 K IN 0.010 M TRIS-HCL PH 7.5, 0.012 M MGCL2, 0.002 M SPERMINE, 6% 1,6-HEXANEDIOL. CRYOPROTECTION CONDITIONS: AFTER WASHING IN FRESH CRYSTALLIZATION SOLUTION FOR 10 MIN AND ADDITION OF 30% MPD (V/V), CRYSTALS WERE FLASH-FROZEN IN LIQUID NITROGEN, DIALYSIS, temperature 277.15K ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.details 1 1 1 TRIS-HCL ? ? ? 1 2 1 MGCL2 ? ? ? 1 3 1 SPERMINE ? ? ? 1 4 1 1,6-HEXANEDIOL ? ? ? 1 5 2 MGCL2 ? ? ? 1 6 2 1,6-HEXANEDIOL ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100.0 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ADSC _diffrn_detector.pdbx_collection_date 1999-04-20 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.932 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE ID14-4' _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline ID14-4 _diffrn_source.pdbx_wavelength 0.932 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1EVV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 25.80 _reflns.d_resolution_high 2.00 _reflns.number_obs 13678 _reflns.number_all 13678 _reflns.percent_possible_obs 88.6 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.036 _reflns.pdbx_netI_over_sigmaI 14.8 _reflns.B_iso_Wilson_estimate 29.3 _reflns.pdbx_redundancy 3.1 _reflns.R_free_details ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.00 _reflns_shell.d_res_low 2.10 _reflns_shell.percent_possible_all 70.7 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.171 _reflns_shell.meanI_over_sigI_obs 2.2 _reflns_shell.pdbx_redundancy 2.6 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1EVV _refine.ls_number_reflns_obs 13678 _refine.ls_number_reflns_all 13678 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 810557.42 _refine.pdbx_data_cutoff_low_absF 0.00000 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 25.79 _refine.ls_d_res_high 2.00 _refine.ls_percent_reflns_obs 88.5 _refine.ls_R_factor_obs 0.2270000 _refine.ls_R_factor_all 0.2270000 _refine.ls_R_factor_R_work 0.2270000 _refine.ls_R_factor_R_free 0.2630000 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 6.8 _refine.ls_number_reflns_R_free 926 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 53.6 _refine.aniso_B[1][1] 1.86 _refine.aniso_B[2][2] -0.56 _refine.aniso_B[3][3] -1.30 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 3.76 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.468 _refine.solvent_model_param_bsol 113.1 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;A LOW RESOLUTION LIMIT OF 6.O A WAS USED FOR INITIAL B FACTOR AND BULK SOLVENT CORRECTIONS. THE OCCUPANCY OF NUCLEOTIDE D16, AS WELL AS THOSE OF ATOMS P, O1P, O2P, O5* AND C5* OF NUCLEOTIDE D17, WERE REFINED TO ACCOUNT FOR MG2+-CATALYSED PARTIAL CLEAVAGE OF THE TRNA BACKBONE AT EITHER SIDE OF D16. DENSITY FOR THIS PART OF THE MOLECULE WAS POOR AND ITS PLACEMENT SHOULD THEREFORE BE CONSIDERED TENTATIVE. OCCUPANCIES OF ALL MG2+ IONS, THE SPERMINE AND ALL WATER MOLECULES WERE ALSO REFINED. ; _refine.pdbx_starting_model 'PDB ENTRY 1TRA' _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'PARKINSON ET AL.' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.pdbx_overall_phase_error ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1EVV _refine_analyze.Luzzati_coordinate_error_obs 0.32 _refine_analyze.Luzzati_sigma_a_obs 0.29 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.42 _refine_analyze.Luzzati_sigma_a_free 0.39 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1652 _refine_hist.pdbx_number_atoms_ligand 24 _refine_hist.number_atoms_solvent 220 _refine_hist.number_atoms_total 1896 _refine_hist.d_res_high 2.00 _refine_hist.d_res_low 25.79 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.4 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 12.7 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 1.3 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? c_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 7 _refine_ls_shell.d_res_high 2.00 _refine_ls_shell.d_res_low 2.11 _refine_ls_shell.number_reflns_R_work 1432 _refine_ls_shell.R_factor_R_work 0.3240000 _refine_ls_shell.percent_reflns_obs 70.9 _refine_ls_shell.R_factor_R_free 0.3800000 _refine_ls_shell.R_factor_R_free_error 0.038 _refine_ls_shell.percent_reflns_R_free 6.6 _refine_ls_shell.number_reflns_R_free 101 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 TRNA_RNA.PARAM TRNA_RNA.TOP 'X-RAY DIFFRACTION' 2 TRNA_ION.PARAM TRNA_ION.TOP 'X-RAY DIFFRACTION' 3 TRNA_LIGAND.PARAM TRNA_LIGAND.TOP 'X-RAY DIFFRACTION' 4 WATER_REP.PARA WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1EVV _struct.title 'CRYSTAL STRUCTURE OF YEAST PHENYLALANINE TRANSFER RNA AT 2.0 A RESOLUTION' _struct.pdbx_descriptor 'PHENYLALANINE TRANSFER RNA' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1EVV _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'TRANSFER RNA, PHENYLALANINE, PHE-TRNA, YEAST, AMINO-ACID TRANSPORT, RNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 2 ? E N N 2 ? F N N 2 ? G N N 2 ? H N N 2 ? I N N 2 ? J N N 2 ? K N N 2 ? L N N 3 ? M N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A A 9 "O3'" ? ? ? 1_555 A 2MG 10 P ? ? A A 9 A 2MG 10 1_555 ? ? ? ? ? ? ? 1.633 ? covale2 covale ? ? A 2MG 10 "O3'" ? ? ? 1_555 A C 11 P ? ? A 2MG 10 A C 11 1_555 ? ? ? ? ? ? ? 1.594 ? covale3 covale ? ? A G 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? A G 15 A H2U 16 1_555 ? ? ? ? ? ? ? 1.612 ? covale4 covale ? ? A H2U 16 "O3'" ? ? ? 1_555 A H2U 17 P ? ? A H2U 16 A H2U 17 1_555 ? ? ? ? ? ? ? 1.622 ? covale5 covale ? ? A H2U 17 "O3'" ? ? ? 1_555 A G 18 P ? ? A H2U 17 A G 18 1_555 ? ? ? ? ? ? ? 1.595 ? covale6 covale ? ? A C 25 "O3'" ? ? ? 1_555 A M2G 26 P ? ? A C 25 A M2G 26 1_555 ? ? ? ? ? ? ? 1.614 ? covale7 covale ? ? A M2G 26 "O3'" ? ? ? 1_555 A C 27 P ? ? A M2G 26 A C 27 1_555 ? ? ? ? ? ? ? 1.603 ? covale8 covale ? ? A A 31 "O3'" ? ? ? 1_555 A OMC 32 P ? ? A A 31 A OMC 32 1_555 ? ? ? ? ? ? ? 1.611 ? covale9 covale ? ? A OMC 32 "O3'" ? ? ? 1_555 A U 33 P ? ? A OMC 32 A U 33 1_555 ? ? ? ? ? ? ? 1.608 ? covale10 covale ? ? A U 33 "O3'" ? ? ? 1_555 A OMG 34 P ? ? A U 33 A OMG 34 1_555 ? ? ? ? ? ? ? 1.609 ? covale11 covale ? ? A OMG 34 "O3'" ? ? ? 1_555 A A 35 P ? ? A OMG 34 A A 35 1_555 ? ? ? ? ? ? ? 1.614 ? covale12 covale ? ? A A 36 "O3'" ? ? ? 1_555 A YG 37 P ? ? A A 36 A YG 37 1_555 ? ? ? ? ? ? ? 1.609 ? covale13 covale ? ? A YG 37 "O3'" ? ? ? 1_555 A A 38 P ? ? A YG 37 A A 38 1_555 ? ? ? ? ? ? ? 1.605 ? covale14 covale ? ? A A 38 "O3'" ? ? ? 1_555 A PSU 39 P ? ? A A 38 A PSU 39 1_555 ? ? ? ? ? ? ? 1.611 ? covale15 covale ? ? A PSU 39 "O3'" ? ? ? 1_555 A 5MC 40 P ? ? A PSU 39 A 5MC 40 1_555 ? ? ? ? ? ? ? 1.608 ? covale16 covale ? ? A 5MC 40 "O3'" ? ? ? 1_555 A U 41 P ? ? A 5MC 40 A U 41 1_555 ? ? ? ? ? ? ? 1.600 ? covale17 covale ? ? A G 45 "O3'" ? ? ? 1_555 A 7MG 46 P ? ? A G 45 A 7MG 46 1_555 ? ? ? ? ? ? ? 1.598 ? covale18 covale ? ? A 7MG 46 "O3'" ? ? ? 1_555 A U 47 P ? ? A 7MG 46 A U 47 1_555 ? ? ? ? ? ? ? 1.629 ? covale19 covale ? ? A C 48 "O3'" ? ? ? 1_555 A 5MC 49 P ? ? A C 48 A 5MC 49 1_555 ? ? ? ? ? ? ? 1.597 ? covale20 covale ? ? A 5MC 49 "O3'" ? ? ? 1_555 A U 50 P ? ? A 5MC 49 A U 50 1_555 ? ? ? ? ? ? ? 1.614 ? covale21 covale ? ? A G 53 "O3'" ? ? ? 1_555 A 5MU 54 P ? ? A G 53 A 5MU 54 1_555 ? ? ? ? ? ? ? 1.639 ? covale22 covale ? ? A 5MU 54 "O3'" ? ? ? 1_555 A PSU 55 P ? ? A 5MU 54 A PSU 55 1_555 ? ? ? ? ? ? ? 1.621 ? covale23 covale ? ? A PSU 55 "O3'" ? ? ? 1_555 A C 56 P ? ? A PSU 55 A C 56 1_555 ? ? ? ? ? ? ? 1.607 ? covale24 covale ? ? A G 57 "O3'" ? ? ? 1_555 A 1MA 58 P ? ? A G 57 A 1MA 58 1_555 ? ? ? ? ? ? ? 1.586 ? covale25 covale ? ? A 1MA 58 "O3'" ? ? ? 1_555 A U 59 P ? ? A 1MA 58 A U 59 1_555 ? ? ? ? ? ? ? 1.638 ? metalc1 metalc ? ? A C 11 OP1 ? ? ? 1_555 F MG . MG ? ? A C 11 A MG 905 1_555 ? ? ? ? ? ? ? 1.954 ? metalc2 metalc ? ? A C 11 OP2 ? ? ? 1_555 F MG . MG ? ? A C 11 A MG 905 1_555 ? ? ? ? ? ? ? 2.301 ? metalc3 metalc ? ? A G 19 OP1 ? ? ? 1_555 D MG . MG ? ? A G 19 A MG 903 1_555 ? ? ? ? ? ? ? 2.047 ? metalc4 metalc ? ? A G 20 OP1 ? ? ? 1_555 C MG . MG ? ? A G 20 A MG 902 1_555 ? ? ? ? ? ? ? 1.875 ? metalc5 metalc ? ? A A 21 OP2 ? ? ? 1_555 C MG . MG ? ? A A 21 A MG 902 1_555 ? ? ? ? ? ? ? 2.039 ? metalc6 metalc ? ? A G 30 OP1 ? ? ? 1_555 K MG . MG ? ? A G 30 A MG 910 1_555 ? ? ? ? ? ? ? 1.837 ? metalc7 metalc ? ? A A 36 OP1 ? ? ? 1_555 G MG . MG ? ? A A 36 A MG 906 1_555 ? ? ? ? ? ? ? 1.756 ? metalc8 metalc ? ? A G 43 OP2 ? ? ? 1_555 H MG . MG ? ? A G 43 A MG 907 1_555 ? ? ? ? ? ? ? 2.158 ? metalc9 metalc ? ? A U 52 OP1 ? ? ? 1_555 J MG . MG ? ? A U 52 A MG 909 1_555 ? ? ? ? ? ? ? 2.228 ? metalc10 metalc ? ? A G 71 "O3'" ? ? ? 1_555 I MG . MG ? ? A G 71 A MG 908 1_555 ? ? ? ? ? ? ? 1.999 ? metalc11 metalc ? ? A C 72 OP1 ? ? ? 1_555 I MG . MG ? ? A C 72 A MG 908 1_555 ? ? ? ? ? ? ? 2.466 ? metalc12 metalc ? ? A C 72 OP2 ? ? ? 1_555 I MG . MG ? ? A C 72 A MG 908 1_555 ? ? ? ? ? ? ? 2.252 ? metalc13 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 902 A HOH 1105 1_555 ? ? ? ? ? ? ? 1.925 ? metalc14 metalc ? ? C MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 902 A HOH 1114 1_555 ? ? ? ? ? ? ? 2.168 ? metalc15 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 919 1_555 ? ? ? ? ? ? ? 2.196 ? metalc16 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 920 1_555 ? ? ? ? ? ? ? 2.069 ? metalc17 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 918 1_555 ? ? ? ? ? ? ? 1.839 ? metalc18 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 922 1_555 ? ? ? ? ? ? ? 1.917 ? metalc19 metalc ? ? D MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 903 A HOH 921 1_555 ? ? ? ? ? ? ? 2.098 ? metalc20 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 941 1_555 ? ? ? ? ? ? ? 1.987 ? metalc21 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 936 1_555 ? ? ? ? ? ? ? 2.137 ? metalc22 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 938 1_555 ? ? ? ? ? ? ? 1.761 ? metalc23 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 937 1_555 ? ? ? ? ? ? ? 1.919 ? metalc24 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 939 1_555 ? ? ? ? ? ? ? 1.967 ? metalc25 metalc ? ? E MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 904 A HOH 940 1_555 ? ? ? ? ? ? ? 2.055 ? metalc26 metalc ? ? H MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 907 A HOH 971 1_555 ? ? ? ? ? ? ? 2.133 ? metalc27 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 909 A HOH 1062 1_555 ? ? ? ? ? ? ? 2.095 ? metalc28 metalc ? ? J MG . MG ? ? ? 1_555 M HOH . O ? ? A MG 909 A HOH 1043 1_555 ? ? ? ? ? ? ? 2.134 ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog7 hydrog ? ? A G 3 N1 ? ? ? 1_555 A C 70 N3 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog8 hydrog ? ? A G 3 N2 ? ? ? 1_555 A C 70 O2 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog9 hydrog ? ? A G 3 O6 ? ? ? 1_555 A C 70 N4 ? ? A G 3 A C 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog10 hydrog ? ? A G 4 N1 ? ? ? 1_555 A U 69 O2 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog11 hydrog ? ? A G 4 O6 ? ? ? 1_555 A U 69 N3 ? ? A G 4 A U 69 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? hydrog12 hydrog ? ? A A 5 N1 ? ? ? 1_555 A U 68 N3 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog13 hydrog ? ? A A 5 N6 ? ? ? 1_555 A U 68 O4 ? ? A A 5 A U 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog14 hydrog ? ? A U 6 N3 ? ? ? 1_555 A A 67 N1 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog15 hydrog ? ? A U 6 O4 ? ? ? 1_555 A A 67 N6 ? ? A U 6 A A 67 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog16 hydrog ? ? A U 7 N3 ? ? ? 1_555 A A 66 N1 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog17 hydrog ? ? A U 7 O4 ? ? ? 1_555 A A 66 N6 ? ? A U 7 A A 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog18 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog19 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog20 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? hydrog21 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? hydrog22 hydrog ? ? A 2MG 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog23 hydrog ? ? A 2MG 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog24 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog25 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A 2MG 10 A G 45 1_555 ? ? ? ? ? ? '2MG-G MISPAIR' ? ? hydrog26 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog27 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog28 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog29 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog30 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog31 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog32 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog33 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog34 hydrog ? ? A G 15 N1 ? ? ? 1_555 A C 48 O2 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog35 hydrog ? ? A G 15 N2 ? ? ? 1_555 A C 48 N3 ? ? A G 15 A C 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog36 hydrog ? ? A G 18 N1 ? ? ? 1_555 A PSU 55 O4 ? ? A G 18 A PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? hydrog37 hydrog ? ? A G 19 N1 ? ? ? 1_555 A C 56 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog38 hydrog ? ? A G 19 N2 ? ? ? 1_555 A C 56 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog39 hydrog ? ? A G 19 O6 ? ? ? 1_555 A C 56 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog40 hydrog ? ? A G 22 N7 ? ? ? 1_555 A 7MG 46 N1 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog41 hydrog ? ? A G 22 O6 ? ? ? 1_555 A 7MG 46 N2 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? hydrog42 hydrog ? ? A M2G 26 N1 ? ? ? 1_555 A A 44 N1 ? ? A M2G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog43 hydrog ? ? A M2G 26 O6 ? ? ? 1_555 A A 44 N6 ? ? A M2G 26 A A 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? hydrog44 hydrog ? ? A C 27 N3 ? ? ? 1_555 A G 43 N1 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog45 hydrog ? ? A C 27 N4 ? ? ? 1_555 A G 43 O6 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog46 hydrog ? ? A C 27 O2 ? ? ? 1_555 A G 43 N2 ? ? A C 27 A G 43 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog47 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog48 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog49 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog50 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog51 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog52 hydrog ? ? A G 30 N1 ? ? ? 1_555 A 5MC 40 N3 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog53 hydrog ? ? A G 30 N2 ? ? ? 1_555 A 5MC 40 O2 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog54 hydrog ? ? A G 30 O6 ? ? ? 1_555 A 5MC 40 N4 ? ? A G 30 A 5MC 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog55 hydrog ? ? A A 31 N1 ? ? ? 1_555 A PSU 39 N3 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog56 hydrog ? ? A A 31 N6 ? ? ? 1_555 A PSU 39 O2 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? hydrog57 hydrog ? ? A OMC 32 O2 ? ? ? 1_555 A A 38 N6 ? ? A OMC 32 A A 38 1_555 ? ? ? ? ? ? 'OMC-A MISPAIR' ? ? hydrog58 hydrog ? ? A 5MC 49 N3 ? ? ? 1_555 A G 65 N1 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog59 hydrog ? ? A 5MC 49 N4 ? ? ? 1_555 A G 65 O6 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog60 hydrog ? ? A 5MC 49 O2 ? ? ? 1_555 A G 65 N2 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog61 hydrog ? ? A U 50 N3 ? ? ? 1_555 A A 64 N1 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog62 hydrog ? ? A U 50 O4 ? ? ? 1_555 A A 64 N6 ? ? A U 50 A A 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog63 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog64 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog65 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog66 hydrog ? ? A U 52 N3 ? ? ? 1_555 A A 62 N1 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog67 hydrog ? ? A U 52 O4 ? ? ? 1_555 A A 62 N6 ? ? A U 52 A A 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog68 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog69 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog70 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? hydrog71 hydrog ? ? A 5MU 54 N3 ? ? ? 1_555 A 1MA 58 N7 ? ? A 5MU 54 A 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? hydrog72 hydrog ? ? A 5MU 54 O2 ? ? ? 1_555 A 1MA 58 N6 ? ? A 5MU 54 A 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE MG A 901' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG A 902' AC3 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 903' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE MG A 904' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE MG A 905' AC6 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 906' AC7 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 907' AC8 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 908' AC9 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MG A 909' BC1 Software ? ? ? ? 2 'BINDING SITE FOR RESIDUE MG A 910' BC2 Software ? ? ? ? 8 'BINDING SITE FOR RESIDUE SPM A 501' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 U A 12 ? U A 12 . ? 1_555 ? 2 AC1 5 HOH M . ? HOH A 985 . ? 1_555 ? 3 AC1 5 HOH M . ? HOH A 986 . ? 1_555 ? 4 AC1 5 HOH M . ? HOH A 987 . ? 1_555 ? 5 AC1 5 HOH M . ? HOH A 988 . ? 1_555 ? 6 AC2 4 G A 20 ? G A 20 . ? 1_555 ? 7 AC2 4 A A 21 ? A A 21 . ? 1_555 ? 8 AC2 4 HOH M . ? HOH A 1105 . ? 1_555 ? 9 AC2 4 HOH M . ? HOH A 1114 . ? 1_555 ? 10 AC3 6 G A 19 ? G A 19 . ? 1_555 ? 11 AC3 6 HOH M . ? HOH A 918 . ? 1_555 ? 12 AC3 6 HOH M . ? HOH A 919 . ? 1_555 ? 13 AC3 6 HOH M . ? HOH A 920 . ? 1_555 ? 14 AC3 6 HOH M . ? HOH A 921 . ? 1_555 ? 15 AC3 6 HOH M . ? HOH A 922 . ? 1_555 ? 16 AC4 6 HOH M . ? HOH A 936 . ? 1_555 ? 17 AC4 6 HOH M . ? HOH A 937 . ? 1_555 ? 18 AC4 6 HOH M . ? HOH A 938 . ? 1_555 ? 19 AC4 6 HOH M . ? HOH A 939 . ? 1_555 ? 20 AC4 6 HOH M . ? HOH A 940 . ? 1_555 ? 21 AC4 6 HOH M . ? HOH A 941 . ? 1_555 ? 22 AC5 4 2MG A 10 ? 2MG A 10 . ? 1_555 ? 23 AC5 4 C A 11 ? C A 11 . ? 1_555 ? 24 AC5 4 HOH M . ? HOH A 977 . ? 1_555 ? 25 AC5 4 HOH M . ? HOH A 1034 . ? 1_555 ? 26 AC6 2 A A 35 ? A A 35 . ? 1_555 ? 27 AC6 2 A A 36 ? A A 36 . ? 1_555 ? 28 AC7 2 G A 43 ? G A 43 . ? 1_555 ? 29 AC7 2 HOH M . ? HOH A 971 . ? 1_555 ? 30 AC8 2 G A 71 ? G A 71 . ? 1_555 ? 31 AC8 2 C A 72 ? C A 72 . ? 1_555 ? 32 AC9 3 U A 52 ? U A 52 . ? 1_555 ? 33 AC9 3 HOH M . ? HOH A 1043 . ? 1_555 ? 34 AC9 3 HOH M . ? HOH A 1062 . ? 1_555 ? 35 BC1 2 A A 29 ? A A 29 . ? 1_555 ? 36 BC1 2 G A 30 ? G A 30 . ? 1_555 ? 37 BC2 8 A A 14 ? A A 14 . ? 1_565 ? 38 BC2 8 U A 52 ? U A 52 . ? 1_555 ? 39 BC2 8 G A 53 ? G A 53 . ? 1_555 ? 40 BC2 8 5MU A 54 ? 5MU A 54 . ? 1_555 ? 41 BC2 8 PSU A 55 ? PSU A 55 . ? 1_555 ? 42 BC2 8 G A 57 ? G A 57 . ? 1_555 ? 43 BC2 8 1MA A 58 ? 1MA A 58 . ? 1_555 ? 44 BC2 8 HOH M . ? HOH A 1108 . ? 1_565 ? # _database_PDB_matrix.entry_id 1EVV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1EVV _atom_sites.fract_transf_matrix[1][1] 0.018099 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000120 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.030314 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.016160 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 G 3 3 3 G G A . n A 1 4 G 4 4 4 G G A . n A 1 5 A 5 5 5 A A A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 2MG 10 10 10 2MG 2MG A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 H2U 16 16 16 H2U H2U A . n A 1 17 H2U 17 17 17 H2U H2U A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 G 20 20 20 G G A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 M2G 26 26 26 M2G M2G A . n A 1 27 C 27 27 27 C C A . n A 1 28 C 28 28 28 C C A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 OMC 32 32 32 OMC OMC A . n A 1 33 U 33 33 33 U U A . n A 1 34 OMG 34 34 34 OMG OMG A . n A 1 35 A 35 35 35 A A A . n A 1 36 A 36 36 36 A A A . n A 1 37 YG 37 37 37 YG YG A . n A 1 38 A 38 38 38 A A A . n A 1 39 PSU 39 39 39 PSU PSU A . n A 1 40 5MC 40 40 40 5MC 5MC A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 G 43 43 43 G G A . n A 1 44 A 44 44 44 A A A . n A 1 45 G 45 45 45 G G A . n A 1 46 7MG 46 46 46 7MG 7MG A . n A 1 47 U 47 47 47 U U A . n A 1 48 C 48 48 48 C C A . n A 1 49 5MC 49 49 49 5MC 5MC A . n A 1 50 U 50 50 50 U U A . n A 1 51 G 51 51 51 G G A . n A 1 52 U 52 52 52 U U A . n A 1 53 G 53 53 53 G G A . n A 1 54 5MU 54 54 54 5MU 5MU A . n A 1 55 PSU 55 55 55 PSU PSU A . n A 1 56 C 56 56 56 C C A . n A 1 57 G 57 57 57 G G A . n A 1 58 1MA 58 58 58 1MA 1MA A . n A 1 59 U 59 59 59 U U A . n A 1 60 C 60 60 60 C C A . n A 1 61 C 61 61 61 C C A . n A 1 62 A 62 62 62 A A A . n A 1 63 C 63 63 63 C C A . n A 1 64 A 64 64 64 A A A . n A 1 65 G 65 65 65 G G A . n A 1 66 A 66 66 66 A A A . n A 1 67 A 67 67 67 A A A . n A 1 68 U 68 68 68 U U A . n A 1 69 U 69 69 69 U U A . n A 1 70 C 70 70 70 C C A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 A 73 73 73 A A A . n A 1 74 C 74 74 74 C C A . n A 1 75 C 75 75 75 C C A . n A 1 76 A 76 76 76 A A A . n # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 2MG 10 A 2MG 10 ? G "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 2 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 3 A H2U 17 A H2U 17 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A M2G 26 A M2G 26 ? G "N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE" 5 A OMC 32 A OMC 32 ? C "O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE" 6 A OMG 34 A OMG 34 ? G "O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE" 7 A YG 37 A YG 37 ? G WYBUTOSINE 8 A PSU 39 A PSU 39 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 9 A 5MC 40 A 5MC 40 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 10 A 7MG 46 A 7MG 46 ? G ? 11 A 5MC 49 A 5MC 49 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 12 A 5MU 54 A 5MU 54 ? U ;5-METHYLURIDINE 5'-MONOPHOSPHATE ; 13 A PSU 55 A PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 14 A 1MA 58 A 1MA 58 ? A ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 OP1 ? A C 11 ? A C 11 ? 1_555 MG ? F MG . ? A MG 905 ? 1_555 OP2 ? A C 11 ? A C 11 ? 1_555 73.6 ? 2 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 919 ? 1_555 99.8 ? 3 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 920 ? 1_555 170.7 ? 4 O ? M HOH . ? A HOH 919 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 920 ? 1_555 81.7 ? 5 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 918 ? 1_555 106.6 ? 6 O ? M HOH . ? A HOH 919 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 918 ? 1_555 87.4 ? 7 O ? M HOH . ? A HOH 920 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 918 ? 1_555 82.5 ? 8 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 88.9 ? 9 O ? M HOH . ? A HOH 919 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 83.5 ? 10 O ? M HOH . ? A HOH 920 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 82.1 ? 11 O ? M HOH . ? A HOH 918 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 922 ? 1_555 163.1 ? 12 OP1 ? A G 19 ? A G 19 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 94.7 ? 13 O ? M HOH . ? A HOH 919 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 165.5 ? 14 O ? M HOH . ? A HOH 920 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 83.8 ? 15 O ? M HOH . ? A HOH 918 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 89.9 ? 16 O ? M HOH . ? A HOH 922 ? 1_555 MG ? D MG . ? A MG 903 ? 1_555 O ? M HOH . ? A HOH 921 ? 1_555 95.3 ? 17 OP1 ? A G 20 ? A G 20 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 OP2 ? A A 21 ? A A 21 ? 1_555 101.1 ? 18 OP1 ? A G 20 ? A G 20 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1105 ? 1_555 108.3 ? 19 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1105 ? 1_555 104.2 ? 20 OP1 ? A G 20 ? A G 20 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1114 ? 1_555 84.1 ? 21 OP2 ? A A 21 ? A A 21 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1114 ? 1_555 162.8 ? 22 O ? M HOH . ? A HOH 1105 ? 1_555 MG ? C MG . ? A MG 902 ? 1_555 O ? M HOH . ? A HOH 1114 ? 1_555 89.5 ? 23 OP2 ? A G 43 ? A G 43 ? 1_555 MG ? H MG . ? A MG 907 ? 1_555 O ? M HOH . ? A HOH 971 ? 1_555 127.2 ? 24 OP1 ? A U 52 ? A U 52 ? 1_555 MG ? J MG . ? A MG 909 ? 1_555 O ? M HOH . ? A HOH 1062 ? 1_555 102.3 ? 25 OP1 ? A U 52 ? A U 52 ? 1_555 MG ? J MG . ? A MG 909 ? 1_555 O ? M HOH . ? A HOH 1043 ? 1_555 125.6 ? 26 O ? M HOH . ? A HOH 1062 ? 1_555 MG ? J MG . ? A MG 909 ? 1_555 O ? M HOH . ? A HOH 1043 ? 1_555 109.7 ? 27 "O3'" ? A G 71 ? A G 71 ? 1_555 MG ? I MG . ? A MG 908 ? 1_555 OP1 ? A C 72 ? A C 72 ? 1_555 67.4 ? 28 "O3'" ? A G 71 ? A G 71 ? 1_555 MG ? I MG . ? A MG 908 ? 1_555 OP2 ? A C 72 ? A C 72 ? 1_555 72.1 ? 29 OP1 ? A C 72 ? A C 72 ? 1_555 MG ? I MG . ? A MG 908 ? 1_555 OP2 ? A C 72 ? A C 72 ? 1_555 65.7 ? 30 O ? M HOH . ? A HOH 941 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 936 ? 1_555 74.9 ? 31 O ? M HOH . ? A HOH 941 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 938 ? 1_555 82.3 ? 32 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 938 ? 1_555 92.9 ? 33 O ? M HOH . ? A HOH 941 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 937 ? 1_555 91.4 ? 34 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 937 ? 1_555 85.9 ? 35 O ? M HOH . ? A HOH 938 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 937 ? 1_555 173.6 ? 36 O ? M HOH . ? A HOH 941 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 939 ? 1_555 100.1 ? 37 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 939 ? 1_555 170.5 ? 38 O ? M HOH . ? A HOH 938 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 939 ? 1_555 94.5 ? 39 O ? M HOH . ? A HOH 937 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 939 ? 1_555 86.1 ? 40 O ? M HOH . ? A HOH 941 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 173.7 ? 41 O ? M HOH . ? A HOH 936 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 98.7 ? 42 O ? M HOH . ? A HOH 938 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 98.7 ? 43 O ? M HOH . ? A HOH 937 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 87.7 ? 44 O ? M HOH . ? A HOH 939 ? 1_555 MG ? E MG . ? A MG 904 ? 1_555 O ? M HOH . ? A HOH 940 ? 1_555 86.1 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-05-01 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal CNS refinement . ? 1 DENZO 'data reduction' . ? 2 SCALEPACK 'data scaling' . ? 3 SOLVE phasing . ? 4 CNS phasing . ? 5 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.520 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.087 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # _pdbx_validate_rmsd_angle.id 1 _pdbx_validate_rmsd_angle.PDB_model_num 1 _pdbx_validate_rmsd_angle.auth_atom_id_1 "C5'" _pdbx_validate_rmsd_angle.auth_asym_id_1 A _pdbx_validate_rmsd_angle.auth_comp_id_1 G _pdbx_validate_rmsd_angle.auth_seq_id_1 18 _pdbx_validate_rmsd_angle.PDB_ins_code_1 ? _pdbx_validate_rmsd_angle.label_alt_id_1 ? _pdbx_validate_rmsd_angle.auth_atom_id_2 "C4'" _pdbx_validate_rmsd_angle.auth_asym_id_2 A _pdbx_validate_rmsd_angle.auth_comp_id_2 G _pdbx_validate_rmsd_angle.auth_seq_id_2 18 _pdbx_validate_rmsd_angle.PDB_ins_code_2 ? _pdbx_validate_rmsd_angle.label_alt_id_2 ? _pdbx_validate_rmsd_angle.auth_atom_id_3 "O4'" _pdbx_validate_rmsd_angle.auth_asym_id_3 A _pdbx_validate_rmsd_angle.auth_comp_id_3 G _pdbx_validate_rmsd_angle.auth_seq_id_3 18 _pdbx_validate_rmsd_angle.PDB_ins_code_3 ? _pdbx_validate_rmsd_angle.label_alt_id_3 ? _pdbx_validate_rmsd_angle.angle_value 99.01 _pdbx_validate_rmsd_angle.angle_target_value 109.10 _pdbx_validate_rmsd_angle.angle_deviation -10.09 _pdbx_validate_rmsd_angle.angle_standard_deviation 1.20 _pdbx_validate_rmsd_angle.linker_flag N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 18 ? ? 0.051 'SIDE CHAIN' 2 1 G A 19 ? ? 0.057 'SIDE CHAIN' 3 1 A A 62 ? ? 0.053 'SIDE CHAIN' # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1EVV 'double helix' 1EVV 'a-form double helix' 1EVV 'parallel strands' 1EVV 'hairpin loop' 1EVV 'mismatched base pair' 1EVV 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 -0.856 -0.624 -0.059 -0.778 -6.084 -1.897 1 A_G1:C72_A A 1 ? A 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 -0.287 -0.203 0.369 -10.382 -5.721 1.989 2 A_C2:G71_A A 2 ? A 71 ? 19 1 1 A G 3 1_555 A C 70 1_555 -0.077 -0.135 0.435 0.678 -10.808 -2.562 3 A_G3:C70_A A 3 ? A 70 ? 19 1 1 A G 4 1_555 A U 69 1_555 -2.215 -0.467 0.649 10.047 -5.881 0.141 4 A_G4:U69_A A 4 ? A 69 ? 28 1 1 A A 5 1_555 A U 68 1_555 0.112 -0.203 0.239 6.380 -19.404 3.681 5 A_A5:U68_A A 5 ? A 68 ? 20 1 1 A U 6 1_555 A A 67 1_555 -0.484 -0.250 0.299 -9.165 -19.814 5.553 6 A_U6:A67_A A 6 ? A 67 ? 20 1 1 A U 7 1_555 A A 66 1_555 -0.058 -0.286 -0.062 -2.619 -3.685 1.441 7 A_U7:A66_A A 7 ? A 66 ? 20 1 1 A 5MC 49 1_555 A G 65 1_555 -0.102 -0.230 0.045 -0.835 -7.222 -2.194 8 A_5MC49:G65_A A 49 ? A 65 ? 19 1 1 A U 50 1_555 A A 64 1_555 -0.130 -0.247 0.109 -3.253 -5.803 -2.405 9 A_U50:A64_A A 50 ? A 64 ? 20 1 1 A G 51 1_555 A C 63 1_555 -0.304 -0.157 0.044 -4.614 -13.300 4.243 10 A_G51:C63_A A 51 ? A 63 ? 19 1 1 A U 52 1_555 A A 62 1_555 -0.557 -0.153 0.084 -1.354 -6.604 -0.441 11 A_U52:A62_A A 52 ? A 62 ? 20 1 1 A G 53 1_555 A C 61 1_555 -0.344 -0.153 -0.181 -10.759 -6.495 1.824 12 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A 5MU 54 1_555 A 1MA 58 1_555 4.325 -1.864 -0.048 0.310 2.629 -100.106 13 A_5MU54:1MA58_A A 54 ? A 58 ? 24 4 1 A PSU 55 1_555 A G 18 1_555 0.517 -5.728 0.294 16.780 1.567 -92.692 14 A_PSU55:G18_A A 55 ? A 18 ? ? 2 1 A A 38 1_555 A OMC 32 1_555 -6.405 -2.022 0.743 -3.864 1.184 -0.750 15 A_A38:OMC32_A A 38 ? A 32 ? ? ? 1 A PSU 39 1_555 A A 31 1_555 -2.076 -0.148 0.320 6.125 -15.101 -5.211 16 A_PSU39:A31_A A 39 ? A 31 ? 21 1 1 A 5MC 40 1_555 A G 30 1_555 -0.770 -0.215 -0.044 4.691 -14.351 -1.779 17 A_5MC40:G30_A A 40 ? A 30 ? 19 1 1 A U 41 1_555 A A 29 1_555 -0.062 0.058 0.352 -4.997 -8.759 12.047 18 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A G 42 1_555 A C 28 1_555 -0.005 -0.353 0.471 -4.751 -9.368 -1.525 19 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A G 43 1_555 A C 27 1_555 -0.186 -0.321 0.237 -9.407 -19.973 -2.993 20 A_G43:C27_A A 43 ? A 27 ? 19 1 1 A A 44 1_555 A M2G 26 1_555 0.450 1.374 -0.386 -20.184 -36.279 -14.648 21 A_A44:M2G26_A A 44 ? A 26 ? 8 ? 1 A 2MG 10 1_555 A C 25 1_555 -0.211 -0.310 -0.046 -4.332 -7.901 1.097 22 A_2MG10:C25_A A 10 ? A 25 ? 19 1 1 A C 11 1_555 A G 24 1_555 0.218 -0.235 0.193 -6.717 -18.643 4.132 23 A_C11:G24_A A 11 ? A 24 ? 19 1 1 A U 12 1_555 A A 23 1_555 -0.042 -0.116 0.427 -9.471 -3.636 -2.716 24 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A C 13 1_555 A G 22 1_555 0.256 -0.102 -0.081 5.583 -2.141 1.510 25 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A U 8 1_555 -4.121 -1.898 0.517 5.666 10.912 -101.223 26 A_A14:U8_A A 14 ? A 8 ? 24 4 1 A G 15 1_555 A C 48 1_555 0.125 3.914 0.101 1.825 0.420 152.066 27 A_G15:C48_A A 15 ? A 48 ? 22 2 1 A G 19 1_555 A C 56 1_555 -0.340 -0.005 0.028 -24.992 -25.375 2.475 28 A_G19:C56_A A 19 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 -0.675 -2.102 3.342 -5.597 9.233 42.259 -3.696 0.386 2.905 12.562 7.615 43.555 1 AA_G1C2:G71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A C 2 1_555 A G 71 1_555 A G 3 1_555 A C 70 1_555 -0.086 -1.345 2.936 -0.674 2.480 29.475 -3.097 0.043 2.817 4.863 1.322 29.584 2 AA_C2G3:C70G71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A G 3 1_555 A C 70 1_555 A G 4 1_555 A U 69 1_555 0.228 -1.804 2.736 -4.899 8.534 24.050 -5.755 -1.506 1.911 19.469 11.176 25.958 3 AA_G3G4:U69C70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A G 4 1_555 A U 69 1_555 A A 5 1_555 A U 68 1_555 -0.220 -1.391 3.253 2.047 3.555 42.953 -2.232 0.496 3.121 4.841 -2.788 43.140 4 AA_G4A5:U68U69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A A 5 1_555 A U 68 1_555 A U 6 1_555 A A 67 1_555 0.460 -1.714 3.481 -0.284 8.458 28.412 -5.121 -0.959 2.858 16.767 0.563 29.621 5 AA_A5U6:A67U68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A U 6 1_555 A A 67 1_555 A U 7 1_555 A A 66 1_555 -0.186 -1.258 3.078 1.994 9.787 34.681 -3.268 0.552 2.623 16.011 -3.262 36.048 6 AA_U6U7:A66A67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A U 7 1_555 A A 66 1_555 A 5MC 49 1_555 A G 65 1_555 -0.461 -2.061 3.259 0.685 3.485 34.275 -4.003 0.881 3.032 5.893 -1.158 34.453 7 AA_U75MC49:G65A66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A 5MC 49 1_555 A G 65 1_555 A U 50 1_555 A A 64 1_555 -0.921 -2.096 3.197 -1.479 7.698 29.017 -5.473 1.503 2.610 15.021 2.886 30.036 8 AA_5MC49U50:A64G65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A U 50 1_555 A A 64 1_555 A G 51 1_555 A C 63 1_555 0.267 -1.430 3.335 0.966 4.892 31.549 -3.476 -0.313 3.091 8.927 -1.762 31.931 9 AA_U50G51:C63A64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A G 51 1_555 A C 63 1_555 A U 52 1_555 A A 62 1_555 0.264 -1.309 3.192 -0.992 3.380 28.739 -3.329 -0.737 3.011 6.777 1.990 28.950 10 AA_G51U52:A62C63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A U 52 1_555 A A 62 1_555 A G 53 1_555 A C 61 1_555 0.979 -1.975 3.373 2.047 7.784 33.723 -4.484 -1.337 2.912 13.185 -3.468 34.643 11 AA_U52G53:C61A62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 53 1_555 A C 61 1_555 A 5MU 54 1_555 A 1MA 58 1_555 -2.067 -2.577 3.179 0.420 -3.959 91.352 -1.724 1.452 3.257 -2.766 -0.294 91.419 12 AA_G535MU54:1MA58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A 5MU 54 1_555 A 1MA 58 1_555 A PSU 55 1_555 A G 18 1_555 2.144 -2.392 3.334 6.695 4.161 43.579 -3.577 -2.201 3.381 5.550 -8.931 44.252 13 AA_5MU54PSU55:G181MA58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A A 38 1_555 A OMC 32 1_555 A PSU 39 1_555 A A 31 1_555 -0.236 -1.364 3.073 -7.010 10.920 47.840 -2.361 -0.187 2.726 13.185 8.464 49.468 14 AA_A38PSU39:A31OMC32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A PSU 39 1_555 A A 31 1_555 A 5MC 40 1_555 A G 30 1_555 0.005 -1.414 3.076 -0.499 7.122 38.748 -2.861 -0.062 2.783 10.625 0.745 39.376 15 AA_PSU395MC40:G30A31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A 5MC 40 1_555 A G 30 1_555 A U 41 1_555 A A 29 1_555 0.776 -1.659 3.603 -2.077 4.907 41.013 -2.911 -1.337 3.350 6.968 2.949 41.343 16 AA_5MC40U41:A29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A U 41 1_555 A A 29 1_555 A G 42 1_555 A C 28 1_555 -0.302 -1.779 3.023 -0.136 7.760 26.076 -5.437 0.613 2.405 16.732 0.294 27.187 17 AA_U41G42:C28A29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 42 1_555 A C 28 1_555 A G 43 1_555 A C 27 1_555 -0.082 -1.515 3.277 1.454 5.735 36.174 -3.171 0.323 3.005 9.161 -2.322 36.639 18 AA_G42G43:C27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A G 43 1_555 A C 27 1_555 A A 44 1_555 A M2G 26 1_555 -0.675 -1.092 3.412 5.653 6.026 38.404 -2.347 1.682 3.087 9.034 -8.474 39.250 19 AA_G43A44:M2G26C27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A A 44 1_555 A M2G 26 1_555 A 2MG 10 1_555 A C 25 1_555 -2.885 -2.650 3.379 14.547 16.128 58.780 -3.185 3.351 1.967 15.854 -14.300 62.326 20 AA_A442MG10:C25M2G26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A 2MG 10 1_555 A C 25 1_555 A C 11 1_555 A G 24 1_555 -0.954 -1.611 3.145 -2.754 4.622 38.110 -2.987 1.125 2.996 7.035 4.192 38.474 21 AA_2MG10C11:G24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A C 11 1_555 A G 24 1_555 A U 12 1_555 A A 23 1_555 -0.281 -1.204 3.261 -1.155 7.295 32.327 -3.289 0.306 2.934 12.892 2.041 33.138 22 AA_C11U12:A23G24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A C 13 1_555 A G 22 1_555 1.734 -2.071 2.848 5.682 1.040 27.192 -4.542 -2.364 3.060 2.180 -11.915 27.788 23 AA_U12C13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 22 1_555 A A 14 1_555 A U 8 1_555 -2.385 -0.296 3.280 -0.326 -5.144 57.862 -0.030 2.439 3.305 -5.305 0.336 58.071 24 AA_C13A14:U8G22_AA A 13 ? A 22 ? A 14 ? A 8 ? 1 A A 14 1_555 A U 8 1_555 A G 15 1_555 A C 48 1_555 2.419 -3.447 3.324 0.966 6.987 -63.638 2.933 2.327 3.612 -6.605 0.913 -63.987 25 AA_A14G15:C48U8_AA A 14 ? A 8 ? A 15 ? A 48 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 SPERMINE SPM 4 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 901 901 MG MG A . C 2 MG 1 902 902 MG MG A . D 2 MG 1 903 903 MG MG A . E 2 MG 1 904 904 MG MG A . F 2 MG 1 905 905 MG MG A . G 2 MG 1 906 906 MG MG A . H 2 MG 1 907 907 MG MG A . I 2 MG 1 908 908 MG MG A . J 2 MG 1 909 909 MG MG A . K 2 MG 1 910 910 MG MG A . L 3 SPM 1 501 501 SPM SPM A . M 4 HOH 1 911 1 HOH HOH A . M 4 HOH 2 912 2 HOH HOH A . M 4 HOH 3 913 3 HOH HOH A . M 4 HOH 4 914 4 HOH HOH A . M 4 HOH 5 915 5 HOH HOH A . M 4 HOH 6 916 6 HOH HOH A . M 4 HOH 7 917 7 HOH HOH A . M 4 HOH 8 918 8 HOH HOH A . M 4 HOH 9 919 9 HOH HOH A . M 4 HOH 10 920 10 HOH HOH A . M 4 HOH 11 921 11 HOH HOH A . M 4 HOH 12 922 12 HOH HOH A . M 4 HOH 13 923 13 HOH HOH A . M 4 HOH 14 924 14 HOH HOH A . M 4 HOH 15 925 15 HOH HOH A . M 4 HOH 16 926 16 HOH HOH A . M 4 HOH 17 927 17 HOH HOH A . M 4 HOH 18 928 18 HOH HOH A . M 4 HOH 19 929 19 HOH HOH A . M 4 HOH 20 930 20 HOH HOH A . M 4 HOH 21 931 21 HOH HOH A . M 4 HOH 22 932 22 HOH HOH A . M 4 HOH 23 933 23 HOH HOH A . M 4 HOH 24 934 24 HOH HOH A . M 4 HOH 25 935 25 HOH HOH A . M 4 HOH 26 936 26 HOH HOH A . M 4 HOH 27 937 27 HOH HOH A . M 4 HOH 28 938 28 HOH HOH A . M 4 HOH 29 939 29 HOH HOH A . M 4 HOH 30 940 30 HOH HOH A . M 4 HOH 31 941 31 HOH HOH A . M 4 HOH 32 942 32 HOH HOH A . M 4 HOH 33 943 33 HOH HOH A . M 4 HOH 34 944 34 HOH HOH A . M 4 HOH 35 945 35 HOH HOH A . M 4 HOH 36 946 36 HOH HOH A . M 4 HOH 37 947 37 HOH HOH A . M 4 HOH 38 948 38 HOH HOH A . M 4 HOH 39 949 39 HOH HOH A . M 4 HOH 40 950 40 HOH HOH A . M 4 HOH 41 951 41 HOH HOH A . M 4 HOH 42 952 42 HOH HOH A . M 4 HOH 43 953 43 HOH HOH A . M 4 HOH 44 954 44 HOH HOH A . M 4 HOH 45 955 45 HOH HOH A . M 4 HOH 46 956 46 HOH HOH A . M 4 HOH 47 957 47 HOH HOH A . M 4 HOH 48 958 48 HOH HOH A . M 4 HOH 49 959 49 HOH HOH A . M 4 HOH 50 960 50 HOH HOH A . M 4 HOH 51 961 51 HOH HOH A . M 4 HOH 52 962 52 HOH HOH A . M 4 HOH 53 963 53 HOH HOH A . M 4 HOH 54 964 54 HOH HOH A . M 4 HOH 55 965 55 HOH HOH A . M 4 HOH 56 966 56 HOH HOH A . M 4 HOH 57 967 57 HOH HOH A . M 4 HOH 58 968 58 HOH HOH A . M 4 HOH 59 969 59 HOH HOH A . M 4 HOH 60 970 60 HOH HOH A . M 4 HOH 61 971 61 HOH HOH A . M 4 HOH 62 972 62 HOH HOH A . M 4 HOH 63 973 63 HOH HOH A . M 4 HOH 64 974 64 HOH HOH A . M 4 HOH 65 975 65 HOH HOH A . M 4 HOH 66 976 66 HOH HOH A . M 4 HOH 67 977 67 HOH HOH A . M 4 HOH 68 978 68 HOH HOH A . M 4 HOH 69 979 69 HOH HOH A . M 4 HOH 70 980 70 HOH HOH A . M 4 HOH 71 981 71 HOH HOH A . M 4 HOH 72 982 72 HOH HOH A . M 4 HOH 73 983 73 HOH HOH A . M 4 HOH 74 984 74 HOH HOH A . M 4 HOH 75 985 75 HOH HOH A . M 4 HOH 76 986 76 HOH HOH A . M 4 HOH 77 987 77 HOH HOH A . M 4 HOH 78 988 78 HOH HOH A . M 4 HOH 79 989 79 HOH HOH A . M 4 HOH 80 990 80 HOH HOH A . M 4 HOH 81 991 81 HOH HOH A . M 4 HOH 82 992 82 HOH HOH A . M 4 HOH 83 993 83 HOH HOH A . M 4 HOH 84 994 84 HOH HOH A . M 4 HOH 85 995 85 HOH HOH A . M 4 HOH 86 996 86 HOH HOH A . M 4 HOH 87 997 87 HOH HOH A . M 4 HOH 88 998 88 HOH HOH A . M 4 HOH 89 999 89 HOH HOH A . M 4 HOH 90 1000 90 HOH HOH A . M 4 HOH 91 1001 91 HOH HOH A . M 4 HOH 92 1002 92 HOH HOH A . M 4 HOH 93 1003 93 HOH HOH A . M 4 HOH 94 1004 94 HOH HOH A . M 4 HOH 95 1005 95 HOH HOH A . M 4 HOH 96 1006 96 HOH HOH A . M 4 HOH 97 1007 97 HOH HOH A . M 4 HOH 98 1008 98 HOH HOH A . M 4 HOH 99 1009 99 HOH HOH A . M 4 HOH 100 1010 100 HOH HOH A . M 4 HOH 101 1011 101 HOH HOH A . M 4 HOH 102 1012 102 HOH HOH A . M 4 HOH 103 1013 103 HOH HOH A . M 4 HOH 104 1014 104 HOH HOH A . M 4 HOH 105 1015 105 HOH HOH A . M 4 HOH 106 1016 106 HOH HOH A . M 4 HOH 107 1017 107 HOH HOH A . M 4 HOH 108 1018 108 HOH HOH A . M 4 HOH 109 1019 109 HOH HOH A . M 4 HOH 110 1020 110 HOH HOH A . M 4 HOH 111 1021 111 HOH HOH A . M 4 HOH 112 1022 112 HOH HOH A . M 4 HOH 113 1023 113 HOH HOH A . M 4 HOH 114 1024 114 HOH HOH A . M 4 HOH 115 1025 115 HOH HOH A . M 4 HOH 116 1026 116 HOH HOH A . M 4 HOH 117 1027 117 HOH HOH A . M 4 HOH 118 1028 118 HOH HOH A . M 4 HOH 119 1029 119 HOH HOH A . M 4 HOH 120 1030 120 HOH HOH A . M 4 HOH 121 1031 121 HOH HOH A . M 4 HOH 122 1032 122 HOH HOH A . M 4 HOH 123 1033 123 HOH HOH A . M 4 HOH 124 1034 124 HOH HOH A . M 4 HOH 125 1035 125 HOH HOH A . M 4 HOH 126 1036 126 HOH HOH A . M 4 HOH 127 1037 127 HOH HOH A . M 4 HOH 128 1038 128 HOH HOH A . M 4 HOH 129 1039 129 HOH HOH A . M 4 HOH 130 1040 130 HOH HOH A . M 4 HOH 131 1041 131 HOH HOH A . M 4 HOH 132 1042 132 HOH HOH A . M 4 HOH 133 1043 133 HOH HOH A . M 4 HOH 134 1044 134 HOH HOH A . M 4 HOH 135 1045 135 HOH HOH A . M 4 HOH 136 1046 136 HOH HOH A . M 4 HOH 137 1047 137 HOH HOH A . M 4 HOH 138 1048 138 HOH HOH A . M 4 HOH 139 1049 139 HOH HOH A . M 4 HOH 140 1050 140 HOH HOH A . M 4 HOH 141 1051 141 HOH HOH A . M 4 HOH 142 1052 142 HOH HOH A . M 4 HOH 143 1053 143 HOH HOH A . M 4 HOH 144 1054 144 HOH HOH A . M 4 HOH 145 1055 145 HOH HOH A . M 4 HOH 146 1056 146 HOH HOH A . M 4 HOH 147 1057 147 HOH HOH A . M 4 HOH 148 1058 148 HOH HOH A . M 4 HOH 149 1059 149 HOH HOH A . M 4 HOH 150 1060 150 HOH HOH A . M 4 HOH 151 1061 151 HOH HOH A . M 4 HOH 152 1062 152 HOH HOH A . M 4 HOH 153 1063 153 HOH HOH A . M 4 HOH 154 1064 154 HOH HOH A . M 4 HOH 155 1065 155 HOH HOH A . M 4 HOH 156 1066 156 HOH HOH A . M 4 HOH 157 1067 157 HOH HOH A . M 4 HOH 158 1068 158 HOH HOH A . M 4 HOH 159 1069 159 HOH HOH A . M 4 HOH 160 1070 160 HOH HOH A . M 4 HOH 161 1071 161 HOH HOH A . M 4 HOH 162 1072 162 HOH HOH A . M 4 HOH 163 1073 163 HOH HOH A . M 4 HOH 164 1074 164 HOH HOH A . M 4 HOH 165 1075 165 HOH HOH A . M 4 HOH 166 1076 166 HOH HOH A . M 4 HOH 167 1077 167 HOH HOH A . M 4 HOH 168 1078 168 HOH HOH A . M 4 HOH 169 1079 169 HOH HOH A . M 4 HOH 170 1080 170 HOH HOH A . M 4 HOH 171 1081 171 HOH HOH A . M 4 HOH 172 1082 172 HOH HOH A . M 4 HOH 173 1083 173 HOH HOH A . M 4 HOH 174 1084 174 HOH HOH A . M 4 HOH 175 1085 175 HOH HOH A . M 4 HOH 176 1086 176 HOH HOH A . M 4 HOH 177 1087 177 HOH HOH A . M 4 HOH 178 1088 178 HOH HOH A . M 4 HOH 179 1089 179 HOH HOH A . M 4 HOH 180 1090 180 HOH HOH A . M 4 HOH 181 1091 181 HOH HOH A . M 4 HOH 182 1092 182 HOH HOH A . M 4 HOH 183 1093 183 HOH HOH A . M 4 HOH 184 1094 184 HOH HOH A . M 4 HOH 185 1095 185 HOH HOH A . M 4 HOH 186 1096 186 HOH HOH A . M 4 HOH 187 1097 187 HOH HOH A . M 4 HOH 188 1098 188 HOH HOH A . M 4 HOH 189 1099 189 HOH HOH A . M 4 HOH 190 1100 190 HOH HOH A . M 4 HOH 191 1101 191 HOH HOH A . M 4 HOH 192 1102 192 HOH HOH A . M 4 HOH 193 1103 193 HOH HOH A . M 4 HOH 194 1104 194 HOH HOH A . M 4 HOH 195 1105 195 HOH HOH A . M 4 HOH 196 1106 196 HOH HOH A . M 4 HOH 197 1107 197 HOH HOH A . M 4 HOH 198 1108 198 HOH HOH A . M 4 HOH 199 1109 199 HOH HOH A . M 4 HOH 200 1110 200 HOH HOH A . M 4 HOH 201 1111 201 HOH HOH A . M 4 HOH 202 1112 202 HOH HOH A . M 4 HOH 203 1113 203 HOH HOH A . M 4 HOH 204 1114 204 HOH HOH A . M 4 HOH 205 1115 205 HOH HOH A . M 4 HOH 206 1116 206 HOH HOH A . M 4 HOH 207 1117 207 HOH HOH A . M 4 HOH 208 1118 208 HOH HOH A . M 4 HOH 209 1119 209 HOH HOH A . M 4 HOH 210 1120 210 HOH HOH A . M 4 HOH 211 1121 211 HOH HOH A . M 4 HOH 212 1122 212 HOH HOH A . M 4 HOH 213 1123 213 HOH HOH A . M 4 HOH 214 1124 214 HOH HOH A . M 4 HOH 215 1125 215 HOH HOH A . M 4 HOH 216 1126 216 HOH HOH A . M 4 HOH 217 1127 217 HOH HOH A . M 4 HOH 218 1128 218 HOH HOH A . M 4 HOH 219 1129 219 HOH HOH A . M 4 HOH 220 1130 220 HOH HOH A . #