HEADER HYDROLASE 21-APR-00 1EW2 TITLE CRYSTAL STRUCTURE OF A HUMAN PHOSPHATASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: PHOSPHATASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.1.3.1 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 ORGAN: PLACENTA KEYWDS PHOSPHATASE, NON COVALENT COMPLEX, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR M.H.LE DU,T.STIGBRAND,M.J.TAUSSIG,A.MENEZ,E.A.STURA REVDAT 4 29-JUL-20 1EW2 1 COMPND REMARK HETNAM LINK REVDAT 4 2 1 SITE REVDAT 3 13-JUL-11 1EW2 1 VERSN REVDAT 2 24-FEB-09 1EW2 1 VERSN REVDAT 1 04-APR-01 1EW2 0 JRNL AUTH M.H.LE DU,T.STIGBRAND,M.J.TAUSSIG,A.MENEZ,E.A.STURA JRNL TITL CRYSTAL STRUCTURE OF ALKALINE PHOSPHATASE FROM HUMAN JRNL TITL 2 PLACENTA AT 1.8 A RESOLUTION. IMPLICATION FOR A SUBSTRATE JRNL TITL 3 SPECIFICITY. JRNL REF J.BIOL.CHEM. V. 276 9158 2001 JRNL REFN ISSN 0021-9258 JRNL PMID 11124260 JRNL DOI 10.1074/JBC.M009250200 REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 22.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 41585 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.185 REMARK 3 R VALUE (WORKING SET) : 0.185 REMARK 3 FREE R VALUE : 0.242 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 2050 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3652 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 602 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): NULL REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): NULL REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : NULL ; NULL REMARK 3 ANGLE DISTANCE (A) : NULL ; NULL REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : NULL ; NULL REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : NULL ; NULL REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : NULL ; NULL REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : NULL ; NULL REMARK 3 MULTIPLE TORSION (A) : NULL ; NULL REMARK 3 H-BOND (X...Y) (A) : NULL ; NULL REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : NULL ; NULL REMARK 3 STAGGERED (DEGREES) : NULL ; NULL REMARK 3 TRANSVERSE (DEGREES) : NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1EW2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-APR-00. REMARK 100 THE DEPOSITION ID IS D_1000010947. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-APR-97 REMARK 200 TEMPERATURE (KELVIN) : 80.0 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : LURE REMARK 200 BEAMLINE : D41A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.00 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 49278 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 22.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 79.6 REMARK 200 DATA REDUNDANCY : 2.340 REMARK 200 R MERGE (I) : 0.08500 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.74 REMARK 200 COMPLETENESS FOR SHELL (%) : 66.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.32 REMARK 200 R MERGE FOR SHELL (I) : 0.68600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.44 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG, PH 6.0, VAPOR DIFFUSION, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 53.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 44.40000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 57.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 44.40000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 57.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 53.45000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 44.40000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 57.25000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 53.45000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 44.40000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 57.25000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9970 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -268.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 88.80000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.45000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 480 REMARK 465 GLY A 481 REMARK 465 THR A 482 REMARK 465 THR A 483 REMARK 465 ASP A 484 REMARK 465 ALA A 485 REMARK 465 ALA A 486 REMARK 465 HIS A 487 REMARK 465 PRO A 488 REMARK 465 GLY A 489 REMARK 465 ARG A 490 REMARK 465 SER A 491 REMARK 465 VAL A 492 REMARK 465 VAL A 493 REMARK 465 PRO A 494 REMARK 465 ALA A 495 REMARK 465 LEU A 496 REMARK 465 LEU A 497 REMARK 465 PRO A 498 REMARK 465 LEU A 499 REMARK 465 LEU A 500 REMARK 465 ALA A 501 REMARK 465 GLY A 502 REMARK 465 THR A 503 REMARK 465 LEU A 504 REMARK 465 LEU A 505 REMARK 465 LEU A 506 REMARK 465 LEU A 507 REMARK 465 GLU A 508 REMARK 465 THR A 509 REMARK 465 ALA A 510 REMARK 465 THR A 511 REMARK 465 ALA A 512 REMARK 465 PRO A 513 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 1 CG1 CG2 CD1 REMARK 470 GLU A 5 CG CD OE1 OE2 REMARK 470 GLU A 18 CG CD OE1 OE2 REMARK 470 GLN A 30 CG CD OE1 NE2 REMARK 470 ASP A 61 CG OD1 OD2 REMARK 470 LYS A 62 CG CD CE NZ REMARK 470 GLU A 469 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 242 O HOH A 1601 0.53 REMARK 500 C7 NAG A 1000 O HOH A 1136 0.72 REMARK 500 O HOH A 1117 O HOH A 1353 0.90 REMARK 500 CD GLN A 242 O HOH A 1113 1.01 REMARK 500 NE2 GLN A 242 O HOH A 1113 1.11 REMARK 500 N2 NAG A 1000 O HOH A 1136 1.13 REMARK 500 O7 NAG A 1000 O HOH A 1136 1.33 REMARK 500 CD GLN A 242 O HOH A 1601 1.68 REMARK 500 CG GLN A 242 O HOH A 1113 1.78 REMARK 500 CD2 LEU A 26 O HOH A 1556 2.00 REMARK 500 C8 NAG A 1000 O HOH A 1136 2.02 REMARK 500 OE1 GLN A 242 O HOH A 1113 2.02 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 1598 O HOH A 1598 3655 0.80 REMARK 500 O HOH A 1133 O HOH A 1222 4555 1.91 REMARK 500 O HOH A 1035 O HOH A 1399 3655 2.12 REMARK 500 O HOH A 1133 O HOH A 1137 4555 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 42 CB - CG - OD2 ANGL. DEV. = 13.5 DEGREES REMARK 500 ARG A 53 NE - CZ - NH2 ANGL. DEV. = -3.5 DEGREES REMARK 500 LYS A 60 CA - C - N ANGL. DEV. = 16.2 DEGREES REMARK 500 TYR A 76 CB - CG - CD1 ANGL. DEV. = -3.9 DEGREES REMARK 500 THR A 82 CB - CA - C ANGL. DEV. = -22.0 DEGREES REMARK 500 THR A 82 CA - CB - OG1 ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG A 125 CD - NE - CZ ANGL. DEV. = 20.3 DEGREES REMARK 500 ARG A 125 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 135 NE - CZ - NH1 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 166 NE - CZ - NH1 ANGL. DEV. = -3.6 DEGREES REMARK 500 GLN A 180 CA - CB - CG ANGL. DEV. = 13.5 DEGREES REMARK 500 GLN A 180 CB - CG - CD ANGL. DEV. = 17.5 DEGREES REMARK 500 ARG A 204 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 ARG A 245 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 245 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 SER A 261 N - CA - CB ANGL. DEV. = 10.2 DEGREES REMARK 500 VAL A 262 CA - C - N ANGL. DEV. = 22.4 DEGREES REMARK 500 VAL A 262 O - C - N ANGL. DEV. = -14.2 DEGREES REMARK 500 TYR A 276 CB - CG - CD2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 285 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 301 CD - NE - CZ ANGL. DEV. = 14.8 DEGREES REMARK 500 ARG A 301 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG A 314 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 316 CB - CG - OD1 ANGL. DEV. = -6.8 DEGREES REMARK 500 ASP A 316 CB - CG - OD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 HIS A 320 CE1 - NE2 - CD2 ANGL. DEV. = 5.5 DEGREES REMARK 500 LEU A 353 CA - CB - CG ANGL. DEV. = 14.0 DEGREES REMARK 500 ASP A 357 CB - CG - OD1 ANGL. DEV. = 17.0 DEGREES REMARK 500 ASP A 357 CB - CG - OD2 ANGL. DEV. = -13.6 DEGREES REMARK 500 HIS A 358 ND1 - CE1 - NE2 ANGL. DEV. = 9.7 DEGREES REMARK 500 ARG A 370 NE - CZ - NH1 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG A 370 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ASP A 384 CB - CG - OD2 ANGL. DEV. = -5.9 DEGREES REMARK 500 ARG A 385 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 420 NE - CZ - NH1 ANGL. DEV. = 4.2 DEGREES REMARK 500 THR A 431 N - CA - CB ANGL. DEV. = -16.1 DEGREES REMARK 500 HIS A 432 CE1 - NE2 - CD2 ANGL. DEV. = 8.1 DEGREES REMARK 500 THR A 472 N - CA - CB ANGL. DEV. = 35.6 DEGREES REMARK 500 THR A 472 CA - CB - CG2 ANGL. DEV. = 13.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 61 40.46 -100.73 REMARK 500 SER A 261 -32.78 101.15 REMARK 500 VAL A 262 -79.86 -75.11 REMARK 500 THR A 263 -39.51 81.83 REMARK 500 HIS A 358 -176.41 -172.18 REMARK 500 SER A 359 -166.90 -112.68 REMARK 500 VAL A 361 45.26 -85.47 REMARK 500 LEU A 468 -148.42 -102.37 REMARK 500 GLU A 469 -137.41 36.34 REMARK 500 ALA A 473 21.94 92.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 THR A 82 10.22 REMARK 500 LEU A 468 -11.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1002 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD1 REMARK 620 2 ASP A 42 OD2 50.0 REMARK 620 3 SER A 92 OG 115.8 69.8 REMARK 620 4 ASP A 357 OD2 98.5 73.9 82.4 REMARK 620 5 PO4 A1005 O2 102.9 100.4 64.6 146.0 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1003 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 42 OD2 REMARK 620 2 SER A 155 OG 85.3 REMARK 620 3 GLU A 311 OE2 96.6 92.9 REMARK 620 4 HOH A1006 O 178.0 93.8 85.3 REMARK 620 5 HOH A1115 O 93.0 85.0 170.0 85.1 REMARK 620 6 HOH A1426 O 90.3 171.7 94.6 90.3 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A1004 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 216 OE2 REMARK 620 2 GLU A 216 OE1 51.8 REMARK 620 3 PHE A 269 O 138.6 86.9 REMARK 620 4 GLU A 270 OE2 93.5 94.4 91.4 REMARK 620 5 ASP A 285 OD1 135.8 172.3 85.6 84.0 REMARK 620 6 ASP A 285 OD2 85.4 137.1 135.5 91.4 50.6 REMARK 620 7 HOH A1428 O 85.9 87.5 91.0 177.0 94.4 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A1001 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 316 OD1 REMARK 620 2 ASP A 316 OD2 52.6 REMARK 620 3 HIS A 320 NE2 86.9 92.5 REMARK 620 4 HIS A 432 NE2 150.1 97.9 100.7 REMARK 620 5 PO4 A1005 O1 111.8 146.6 117.7 90.4 REMARK 620 6 PO4 A1005 O2 87.6 90.6 170.2 88.1 57.3 REMARK 620 N 1 2 3 4 5 DBREF 1EW2 A 1 513 UNP P05187 PPB1_HUMAN 23 535 SEQRES 1 A 513 ILE ILE PRO VAL GLU GLU GLU ASN PRO ASP PHE TRP ASN SEQRES 2 A 513 ARG GLU ALA ALA GLU ALA LEU GLY ALA ALA LYS LYS LEU SEQRES 3 A 513 GLN PRO ALA GLN THR ALA ALA LYS ASN LEU ILE ILE PHE SEQRES 4 A 513 LEU GLY ASP GLY MET GLY VAL SER THR VAL THR ALA ALA SEQRES 5 A 513 ARG ILE LEU LYS GLY GLN LYS LYS ASP LYS LEU GLY PRO SEQRES 6 A 513 GLU ILE PRO LEU ALA MET ASP ARG PHE PRO TYR VAL ALA SEQRES 7 A 513 LEU SER LYS THR TYR ASN VAL ASP LYS HIS VAL PRO ASP SEQRES 8 A 513 SER GLY ALA THR ALA THR ALA TYR LEU CYS GLY VAL LYS SEQRES 9 A 513 GLY ASN PHE GLN THR ILE GLY LEU SER ALA ALA ALA ARG SEQRES 10 A 513 PHE ASN GLN CYS ASN THR THR ARG GLY ASN GLU VAL ILE SEQRES 11 A 513 SER VAL MET ASN ARG ALA LYS LYS ALA GLY LYS SER VAL SEQRES 12 A 513 GLY VAL VAL THR THR THR ARG VAL GLN HIS ALA SER PRO SEQRES 13 A 513 ALA GLY THR TYR ALA HIS THR VAL ASN ARG ASN TRP TYR SEQRES 14 A 513 SER ASP ALA ASP VAL PRO ALA SER ALA ARG GLN GLU GLY SEQRES 15 A 513 CYS GLN ASP ILE ALA THR GLN LEU ILE SER ASN MET ASP SEQRES 16 A 513 ILE ASP VAL ILE LEU GLY GLY GLY ARG LYS TYR MET PHE SEQRES 17 A 513 ARG MET GLY THR PRO ASP PRO GLU TYR PRO ASP ASP TYR SEQRES 18 A 513 SER GLN GLY GLY THR ARG LEU ASP GLY LYS ASN LEU VAL SEQRES 19 A 513 GLN GLU TRP LEU ALA LYS ARG GLN GLY ALA ARG TYR VAL SEQRES 20 A 513 TRP ASN ARG THR GLU LEU MET GLN ALA SER LEU ASP PRO SEQRES 21 A 513 SER VAL THR HIS LEU MET GLY LEU PHE GLU PRO GLY ASP SEQRES 22 A 513 MET LYS TYR GLU ILE HIS ARG ASP SER THR LEU ASP PRO SEQRES 23 A 513 SER LEU MET GLU MET THR GLU ALA ALA LEU ARG LEU LEU SEQRES 24 A 513 SER ARG ASN PRO ARG GLY PHE PHE LEU PHE VAL GLU GLY SEQRES 25 A 513 GLY ARG ILE ASP HIS GLY HIS HIS GLU SER ARG ALA TYR SEQRES 26 A 513 ARG ALA LEU THR GLU THR ILE MET PHE ASP ASP ALA ILE SEQRES 27 A 513 GLU ARG ALA GLY GLN LEU THR SER GLU GLU ASP THR LEU SEQRES 28 A 513 SER LEU VAL THR ALA ASP HIS SER HIS VAL PHE SER PHE SEQRES 29 A 513 GLY GLY TYR PRO LEU ARG GLY SER SER ILE PHE GLY LEU SEQRES 30 A 513 ALA PRO GLY LYS ALA ARG ASP ARG LYS ALA TYR THR VAL SEQRES 31 A 513 LEU LEU TYR GLY ASN GLY PRO GLY TYR VAL LEU LYS ASP SEQRES 32 A 513 GLY ALA ARG PRO ASP VAL THR GLU SER GLU SER GLY SER SEQRES 33 A 513 PRO GLU TYR ARG GLN GLN SER ALA VAL PRO LEU ASP GLU SEQRES 34 A 513 GLU THR HIS ALA GLY GLU ASP VAL ALA VAL PHE ALA ARG SEQRES 35 A 513 GLY PRO GLN ALA HIS LEU VAL HIS GLY VAL GLN GLU GLN SEQRES 36 A 513 THR PHE ILE ALA HIS VAL MET ALA PHE ALA ALA CYS LEU SEQRES 37 A 513 GLU PRO TYR THR ALA CYS ASP LEU ALA PRO PRO ALA GLY SEQRES 38 A 513 THR THR ASP ALA ALA HIS PRO GLY ARG SER VAL VAL PRO SEQRES 39 A 513 ALA LEU LEU PRO LEU LEU ALA GLY THR LEU LEU LEU LEU SEQRES 40 A 513 GLU THR ALA THR ALA PRO MODRES 1EW2 ASN A 122 ASN GLYCOSYLATION SITE HET NAG A1000 14 HET ZN A1001 1 HET ZN A1002 1 HET MG A1003 1 HET MG A1004 1 HET PO4 A1005 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM ZN ZINC ION HETNAM MG MAGNESIUM ION HETNAM PO4 PHOSPHATE ION FORMUL 2 NAG C8 H15 N O6 FORMUL 3 ZN 2(ZN 2+) FORMUL 5 MG 2(MG 2+) FORMUL 7 PO4 O4 P 3- FORMUL 8 HOH *602(H2 O) HELIX 1 1 PRO A 3 GLU A 7 5 5 HELIX 2 2 ASN A 8 LEU A 26 1 19 HELIX 3 3 GLY A 45 LYS A 60 1 16 HELIX 4 4 LEU A 69 PHE A 74 5 6 HELIX 5 5 ASP A 91 GLY A 102 1 12 HELIX 6 6 GLN A 120 THR A 124 5 5 HELIX 7 7 SER A 131 ALA A 139 1 9 HELIX 8 8 HIS A 153 GLY A 158 1 6 HELIX 9 9 SER A 170 VAL A 174 5 5 HELIX 10 10 PRO A 175 GLU A 181 1 7 HELIX 11 11 ASP A 185 ASN A 193 1 9 HELIX 12 12 ARG A 204 MET A 207 5 4 HELIX 13 13 ASP A 220 GLY A 224 5 5 HELIX 14 14 ASN A 232 LYS A 240 1 9 HELIX 15 15 ASN A 249 ASP A 259 1 11 HELIX 16 16 TYR A 276 ARG A 280 5 5 HELIX 17 17 SER A 287 SER A 300 1 14 HELIX 18 18 ARG A 314 GLU A 321 1 8 HELIX 19 19 ARG A 323 THR A 345 1 23 HELIX 20 20 THR A 410 GLY A 415 1 6 HELIX 21 21 GLN A 445 VAL A 449 5 5 HELIX 22 22 THR A 456 ALA A 466 1 11 SHEET 1 A10 ALA A 244 VAL A 247 0 SHEET 2 A10 HIS A 264 LEU A 268 1 O HIS A 264 N ARG A 245 SHEET 3 A10 VAL A 198 GLY A 202 1 O ILE A 199 N GLY A 267 SHEET 4 A10 SER A 142 ARG A 150 1 O VAL A 143 N VAL A 198 SHEET 5 A10 PHE A 306 GLY A 312 1 O PHE A 307 N GLY A 144 SHEET 6 A10 ASN A 35 GLY A 41 1 O LEU A 36 N LEU A 308 SHEET 7 A10 THR A 350 ALA A 356 1 O LEU A 351 N ILE A 37 SHEET 8 A10 VAL A 437 ARG A 442 -1 O ALA A 438 N ALA A 356 SHEET 9 A10 TYR A 76 LYS A 81 -1 O TYR A 76 N ALA A 441 SHEET 10 A10 VAL A 452 GLU A 454 1 O GLN A 453 N LYS A 81 SHEET 1 B 2 SER A 359 HIS A 360 0 SHEET 2 B 2 HIS A 432 ALA A 433 -1 N ALA A 433 O SER A 359 SHEET 1 C 3 PHE A 362 PHE A 364 0 SHEET 2 C 3 LEU A 391 ASN A 395 -1 O LEU A 392 N SER A 363 SHEET 3 C 3 SER A 423 VAL A 425 1 N ALA A 424 O GLY A 394 SSBOND 1 CYS A 121 CYS A 183 1555 1555 2.03 SSBOND 2 CYS A 467 CYS A 474 1555 1555 2.05 LINK ND2 ASN A 122 C1 NAG A1000 1555 1555 1.02 LINK ND2 ASN A 122 C2 NAG A1000 1555 1555 1.94 LINK OD1 ASP A 42 ZN ZN A1002 1555 1555 2.26 LINK OD2 ASP A 42 ZN ZN A1002 1555 1555 2.65 LINK OD2 ASP A 42 MG MG A1003 1555 1555 2.35 LINK OG SER A 92 ZN ZN A1002 1555 1555 2.58 LINK OG SER A 155 MG MG A1003 1555 1555 2.45 LINK OE2 GLU A 216 MG MG A1004 1555 1555 2.63 LINK OE1 GLU A 216 MG MG A1004 1555 1555 2.40 LINK O PHE A 269 MG MG A1004 1555 1555 2.39 LINK OE2 GLU A 270 MG MG A1004 1555 1555 2.36 LINK OD1 ASP A 285 MG MG A1004 1555 1555 2.64 LINK OD2 ASP A 285 MG MG A1004 1555 1555 2.54 LINK OE2 GLU A 311 MG MG A1003 1555 1555 2.30 LINK OD1 ASP A 316 ZN ZN A1001 1555 1555 2.45 LINK OD2 ASP A 316 ZN ZN A1001 1555 1555 2.61 LINK NE2 HIS A 320 ZN ZN A1001 1555 1555 2.38 LINK OD2 ASP A 357 ZN ZN A1002 1555 1555 2.37 LINK NE2 HIS A 432 ZN ZN A1001 1555 1555 2.37 LINK ZN ZN A1001 O1 PO4 A1005 1555 1555 2.61 LINK ZN ZN A1001 O2 PO4 A1005 1555 1555 2.44 LINK ZN ZN A1002 O2 PO4 A1005 1555 1555 2.25 LINK MG MG A1003 O HOH A1006 1555 1555 2.42 LINK MG MG A1003 O HOH A1115 1555 1555 2.36 LINK MG MG A1003 O HOH A1426 1555 1555 2.50 LINK MG MG A1004 O HOH A1428 1555 1555 2.45 CRYST1 88.800 114.500 106.900 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008730 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009350 0.00000