HEADER STRUCTURAL GENOMICS 28-APR-00 1EX2 TITLE CRYSTAL STRUCTURE OF BACILLUS SUBTILIS MAF PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN MAF; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACILLUS SUBTILIS; SOURCE 3 ORGANISM_TAXID: 1423; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PQE30 KEYWDS B. SUBTILIS PROTEIN MAF, STRUCTURAL GENOMICS, PSI, PROTEIN STRUCTURE KEYWDS 2 INITIATIVE, MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG EXPDTA X-RAY DIFFRACTION AUTHOR G.MINASOV,M.TEPLOVA,G.C.STEWART,E.V.KOONIN,W.F.ANDERSON,M.EGLI, AUTHOR 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS (MCSG) REVDAT 6 20-NOV-24 1EX2 1 HETSYN REVDAT 5 29-JUL-20 1EX2 1 COMPND REMARK HET HETNAM REVDAT 5 2 1 FORMUL LINK SITE ATOM REVDAT 4 24-FEB-09 1EX2 1 VERSN REVDAT 3 18-JAN-05 1EX2 1 JRNL AUTHOR KEYWDS REMARK REVDAT 2 28-JUN-00 1EX2 1 SOURCE REVDAT 1 14-JUN-00 1EX2 0 JRNL AUTH G.MINASOV,M.TEPLOVA,G.C.STEWART,E.V.KOONIN,W.F.ANDERSON, JRNL AUTH 2 M.EGLI JRNL TITL FUNCTIONAL IMPLICATIONS FROM CRYSTAL STRUCTURES OF THE JRNL TITL 2 CONSERVED BACILLUS SUBTILIS PROTEIN MAF WITH AND WITHOUT JRNL TITL 3 DUTP. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 6328 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10841541 JRNL DOI 10.1073/PNAS.97.12.6328 REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH, R.A. AND HUBER, R. REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 25.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.7 REMARK 3 NUMBER OF REFLECTIONS : 40372 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM, 10% OF THE OBSERVED REMARK 3 DATA REMARK 3 R VALUE (WORKING SET) : 0.195 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : 4068 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2926 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 38 REMARK 3 SOLVENT ATOMS : 305 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: MAXIMUM LIKELIHOOD TARGET USING REMARK 3 AMPLITUDES REMARK 4 REMARK 4 1EX2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 01-MAY-00. REMARK 100 THE DEPOSITION ID IS D_1000010982. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-SEP-98 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 5ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1004 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43834 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 4.300 REMARK 200 R MERGE (I) : 0.06800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 17.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.3 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.44900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 8% PEG 8000, 0.1M TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 295.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 31.33000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 46.97000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.00500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 46.97000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 31.33000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.00500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A DIMER CONSTRUCTED FROM CHAINS REMARK 300 A AND B REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 186 REMARK 465 ILE A 187 REMARK 465 ARG A 188 REMARK 465 ALA A 189 REMARK 465 ASP B 186 REMARK 465 ILE B 187 REMARK 465 ARG B 188 REMARK 465 ALA B 189 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 38 -15.84 -49.07 REMARK 500 HIS A 114 135.89 -170.77 REMARK 500 HIS B 114 134.94 -170.70 REMARK 500 MET B 144 -4.09 -57.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: APC121 RELATED DB: TARGETDB DBREF 1EX2 A 1 189 UNP Q02169 MAF_BACSU 1 189 DBREF 1EX2 B 1 189 UNP Q02169 MAF_BACSU 1 189 SEQRES 1 A 189 MET THR LYS PRO LEU ILE LEU ALA SER GLN SER PRO ARG SEQRES 2 A 189 ARG LYS GLU LEU LEU ASP LEU LEU GLN LEU PRO TYR SER SEQRES 3 A 189 ILE ILE VAL SER GLU VAL GLU GLU LYS LEU ASN ARG ASN SEQRES 4 A 189 PHE SER PRO GLU GLU ASN VAL GLN TRP LEU ALA LYS GLN SEQRES 5 A 189 LYS ALA LYS ALA VAL ALA ASP LEU HIS PRO HIS ALA ILE SEQRES 6 A 189 VAL ILE GLY ALA ASP THR MET VAL CYS LEU ASP GLY GLU SEQRES 7 A 189 CYS LEU GLY LYS PRO GLN ASP GLN GLU GLU ALA ALA SER SEQRES 8 A 189 MET LEU ARG ARG LEU SER GLY ARG SER HIS SER VAL ILE SEQRES 9 A 189 THR ALA VAL SER ILE GLN ALA GLU ASN HIS SER GLU THR SEQRES 10 A 189 PHE TYR ASP LYS THR GLU VAL ALA PHE TRP SER LEU SER SEQRES 11 A 189 GLU GLU GLU ILE TRP THR TYR ILE GLU THR LYS GLU PRO SEQRES 12 A 189 MET ASP LYS ALA GLY ALA TYR GLY ILE GLN GLY ARG GLY SEQRES 13 A 189 ALA LEU PHE VAL LYS LYS ILE ASP GLY ASP TYR TYR SER SEQRES 14 A 189 VAL MET GLY LEU PRO ILE SER LYS THR MET ARG ALA LEU SEQRES 15 A 189 ARG HIS PHE ASP ILE ARG ALA SEQRES 1 B 189 MET THR LYS PRO LEU ILE LEU ALA SER GLN SER PRO ARG SEQRES 2 B 189 ARG LYS GLU LEU LEU ASP LEU LEU GLN LEU PRO TYR SER SEQRES 3 B 189 ILE ILE VAL SER GLU VAL GLU GLU LYS LEU ASN ARG ASN SEQRES 4 B 189 PHE SER PRO GLU GLU ASN VAL GLN TRP LEU ALA LYS GLN SEQRES 5 B 189 LYS ALA LYS ALA VAL ALA ASP LEU HIS PRO HIS ALA ILE SEQRES 6 B 189 VAL ILE GLY ALA ASP THR MET VAL CYS LEU ASP GLY GLU SEQRES 7 B 189 CYS LEU GLY LYS PRO GLN ASP GLN GLU GLU ALA ALA SER SEQRES 8 B 189 MET LEU ARG ARG LEU SER GLY ARG SER HIS SER VAL ILE SEQRES 9 B 189 THR ALA VAL SER ILE GLN ALA GLU ASN HIS SER GLU THR SEQRES 10 B 189 PHE TYR ASP LYS THR GLU VAL ALA PHE TRP SER LEU SER SEQRES 11 B 189 GLU GLU GLU ILE TRP THR TYR ILE GLU THR LYS GLU PRO SEQRES 12 B 189 MET ASP LYS ALA GLY ALA TYR GLY ILE GLN GLY ARG GLY SEQRES 13 B 189 ALA LEU PHE VAL LYS LYS ILE ASP GLY ASP TYR TYR SER SEQRES 14 B 189 VAL MET GLY LEU PRO ILE SER LYS THR MET ARG ALA LEU SEQRES 15 B 189 ARG HIS PHE ASP ILE ARG ALA HET GLC C 1 11 HET FRU C 2 12 HET PO4 A 201 5 HET PO4 A 203 5 HET PO4 B 202 10 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FRU BETA-D-FRUCTOFURANOSE HETNAM PO4 PHOSPHATE ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FRU BETA-D-FRUCTOSE; D-FRUCTOSE; FRUCTOSE FORMUL 3 GLC C6 H12 O6 FORMUL 3 FRU C6 H12 O6 FORMUL 4 PO4 3(O4 P 3-) FORMUL 7 HOH *305(H2 O) HELIX 1 1 SER A 11 LEU A 20 1 10 HELIX 2 2 SER A 41 HIS A 61 1 21 HELIX 3 3 ASP A 85 SER A 97 1 13 HELIX 4 4 SER A 130 GLU A 139 1 10 HELIX 5 5 GLU A 142 LYS A 146 5 5 HELIX 6 6 GLN A 153 LEU A 158 5 6 HELIX 7 7 ASP A 166 GLY A 172 1 7 HELIX 8 8 PRO A 174 ARG A 183 1 10 HELIX 9 9 SER B 11 ASP B 19 1 9 HELIX 10 10 LEU B 20 GLN B 22 5 3 HELIX 11 11 SER B 41 ASP B 59 1 19 HELIX 12 12 ASP B 85 SER B 97 1 13 HELIX 13 13 SER B 130 THR B 140 1 11 HELIX 14 14 LYS B 141 LYS B 141 5 1 HELIX 15 15 GLU B 142 LYS B 146 5 5 HELIX 16 16 LYS B 146 TYR B 150 5 5 HELIX 17 17 GLN B 153 LEU B 158 5 6 HELIX 18 18 ASP B 166 GLY B 172 1 7 HELIX 19 19 PRO B 174 ARG B 183 1 10 SSBOND 1 CYS A 74 CYS A 79 1555 1555 2.04 SSBOND 2 CYS B 74 CYS B 79 1555 1555 2.04 LINK C1 GLC C 1 O2 FRU C 2 1555 1555 1.41 CRYST1 62.660 86.010 93.940 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015959 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011627 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010645 0.00000