HEADER HYDROLASE/DNA 17-MAY-00 1F0V TITLE CRYSTAL STRUCTURE OF AN RNASE A DIMER DISPLAYING A NEW TYPE OF 3D TITLE 2 DOMAIN SWAPPING COMPND MOL_ID: 1; COMPND 2 MOLECULE: 5'-D(*CP*G)-3'; COMPND 3 CHAIN: M, N, O, P; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: RIBONUCLEASE A; COMPND 7 CHAIN: A, B, C, D; COMPND 8 SYNONYM: RNASE 1, RNASE A; COMPND 9 EC: 3.1.27.5 SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 MOL_ID: 2; SOURCE 4 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 5 ORGANISM_COMMON: CATTLE; SOURCE 6 ORGANISM_TAXID: 9913; SOURCE 7 ORGAN: PANCREAS KEYWDS DOMAIN SWAPPING, CRYSTAL, RIBONUCLEASE, BOVINE PANCREAS, HYDROLASE- KEYWDS 2 DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Y.S.LIU,G.GOTTE,M.LIBONATI,D.S.EISENBERG REVDAT 6 13-JUL-11 1F0V 1 VERSN REVDAT 5 24-FEB-09 1F0V 1 VERSN REVDAT 4 01-AUG-06 1F0V 1 REMARK AUTHOR COMPND REVDAT 3 01-APR-03 1F0V 1 JRNL REVDAT 2 14-MAR-01 1F0V 1 REMARK REVDAT 1 21-FEB-01 1F0V 0 JRNL AUTH Y.S.LIU,G.GOTTE,M.LIBONATI,D.S.EISENBERG JRNL TITL A DOMAIN-SWAPPED RNASE A DIMER WITH IMPLICATIONS FOR AMYLOID JRNL TITL 2 FORMATION JRNL REF NAT.STRUCT.BIOL. V. 8 211 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11224563 JRNL DOI 10.1038/84941 REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 10.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 68191 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.184 REMARK 3 FREE R VALUE : 0.213 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 11.200 REMARK 3 FREE R VALUE TEST SET COUNT : 7651 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3804 REMARK 3 NUCLEIC ACID ATOMS : 152 REMARK 3 HETEROGEN ATOMS : 164 REMARK 3 SOLVENT ATOMS : 554 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 20.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.019 REMARK 3 BOND ANGLES (DEGREES) : 2.07 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F0V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-MAY-00. REMARK 100 THE RCSB ID CODE IS RCSB011107. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.072 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : AREA DETECTOR REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 76047 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 200 DATA REDUNDANCY : 10.000 REMARK 200 R MERGE (I) : 0.05200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.00 REMARK 200 R MERGE FOR SHELL (I) : 0.08000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.96 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.23 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M PHOSPHATE BUFFER, 16 % PEG 4000, REMARK 280 2 % DIOXANE, PH 6.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 48.17050 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: M, A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: N, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: O, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: P, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O SER D 690 O3 GOL C 919 2555 1.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 85 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 85 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 48 65.48 -100.16 REMARK 500 GLN A 60 -132.50 -108.22 REMARK 500 SER B 222 137.41 170.84 REMARK 500 HIS B 248 65.25 -104.29 REMARK 500 GLN B 260 -133.80 -103.37 REMARK 500 ASN B 271 36.08 -96.82 REMARK 500 ASN B 294 76.91 -114.83 REMARK 500 HIS C 448 63.86 -103.64 REMARK 500 GLN C 460 -133.77 -103.06 REMARK 500 ASN C 494 72.93 -104.18 REMARK 500 ASP D 614 72.19 -150.96 REMARK 500 HIS D 648 68.07 -106.57 REMARK 500 GLN D 660 -130.33 -103.67 REMARK 500 ASN D 671 35.67 -95.78 REMARK 500 LYS D 691 110.05 -165.16 REMARK 500 ASN D 694 69.21 -105.73 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A1537 DISTANCE = 6.32 ANGSTROMS REMARK 525 HOH A1538 DISTANCE = 5.67 ANGSTROMS REMARK 525 HOH A1574 DISTANCE = 5.81 ANGSTROMS REMARK 525 HOH B1536 DISTANCE = 5.63 ANGSTROMS REMARK 525 HOH D1585 DISTANCE = 5.73 ANGSTROMS REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 801 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 802 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 C 803 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 P 804 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 901 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 902 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 903 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 904 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 905 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 906 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 907 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 908 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 909 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 910 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 911 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 912 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 913 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 914 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 915 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 916 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 917 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 918 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL C 919 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 920 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 921 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 922 REMARK 800 REMARK 800 SITE_IDENTIFIER: CC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 923 REMARK 800 REMARK 800 SITE_IDENTIFIER: DC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL D 924 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1A2W RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A 3D DOMAIN-SWAPPED DIMER OF RNASE A REMARK 900 AT 2.1 A RESOLUTION DBREF 1F0V A 1 124 UNP P61823 RNAS1_BOVIN 27 150 DBREF 1F0V B 201 324 UNP P61823 RNAS1_BOVIN 27 150 DBREF 1F0V C 401 524 UNP P61823 RNAS1_BOVIN 27 150 DBREF 1F0V D 601 724 UNP P61823 RNAS1_BOVIN 27 150 DBREF 1F0V M 751 752 PDB 1F0V 1F0V 751 752 DBREF 1F0V N 753 754 PDB 1F0V 1F0V 753 754 DBREF 1F0V O 755 756 PDB 1F0V 1F0V 755 756 DBREF 1F0V P 757 758 PDB 1F0V 1F0V 757 758 SEQRES 1 M 2 DC DG SEQRES 1 N 2 DC DG SEQRES 1 O 2 DC DG SEQRES 1 P 2 DC DG SEQRES 1 A 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 A 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 A 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 A 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 A 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 A 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 A 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 A 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 A 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 A 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 B 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 B 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 B 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 B 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 B 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 B 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 B 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 B 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 B 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 B 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 C 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 C 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 C 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 C 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 C 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 C 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 C 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 C 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 C 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 C 124 VAL HIS PHE ASP ALA SER VAL SEQRES 1 D 124 LYS GLU THR ALA ALA ALA LYS PHE GLU ARG GLN HIS MET SEQRES 2 D 124 ASP SER SER THR SER ALA ALA SER SER SER ASN TYR CYS SEQRES 3 D 124 ASN GLN MET MET LYS SER ARG ASN LEU THR LYS ASP ARG SEQRES 4 D 124 CYS LYS PRO VAL ASN THR PHE VAL HIS GLU SER LEU ALA SEQRES 5 D 124 ASP VAL GLN ALA VAL CYS SER GLN LYS ASN VAL ALA CYS SEQRES 6 D 124 LYS ASN GLY GLN THR ASN CYS TYR GLN SER TYR SER THR SEQRES 7 D 124 MET SER ILE THR ASP CYS ARG GLU THR GLY SER SER LYS SEQRES 8 D 124 TYR PRO ASN CYS ALA TYR LYS THR THR GLN ALA ASN LYS SEQRES 9 D 124 HIS ILE ILE VAL ALA CYS GLU GLY ASN PRO TYR VAL PRO SEQRES 10 D 124 VAL HIS PHE ASP ALA SER VAL HET PO4 A 801 5 HET PO4 B 802 5 HET PO4 C 803 5 HET PO4 P 804 5 HET GOL D 901 6 HET GOL B 902 6 HET GOL C 903 6 HET GOL A 904 6 HET GOL B 905 6 HET GOL B 906 6 HET GOL B 907 6 HET GOL A 908 6 HET GOL D 909 6 HET GOL B 910 6 HET GOL A 911 6 HET GOL C 912 6 HET GOL D 913 6 HET GOL B 914 6 HET GOL A 915 6 HET GOL D 916 6 HET GOL C 917 6 HET GOL A 918 6 HET GOL C 919 6 HET GOL B 920 6 HET GOL B 921 6 HET GOL B 922 6 HET GOL A 923 6 HET GOL D 924 6 HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 9 PO4 4(O4 P 3-) FORMUL 13 GOL 24(C3 H8 O3) FORMUL 37 HOH *554(H2 O) HELIX 1 1 THR A 3 MET A 13 1 11 HELIX 2 2 ASN A 24 ARG A 33 1 10 HELIX 3 3 SER A 50 VAL A 57 1 8 HELIX 4 4 CYS A 58 GLN A 60 5 3 HELIX 5 5 THR B 203 MET B 213 1 11 HELIX 6 6 ASN B 224 ARG B 233 1 10 HELIX 7 7 SER B 250 VAL B 257 1 8 HELIX 8 8 CYS B 258 GLN B 260 5 3 HELIX 9 9 THR C 403 MET C 413 1 11 HELIX 10 10 ASN C 424 ARG C 433 1 10 HELIX 11 11 SER C 450 VAL C 457 1 8 HELIX 12 12 CYS C 458 GLN C 460 5 3 HELIX 13 13 THR D 603 MET D 613 1 11 HELIX 14 14 ASN D 624 ARG D 633 1 10 HELIX 15 15 SER D 650 ALA D 656 1 7 HELIX 16 16 VAL D 657 GLN D 660 5 4 SHEET 1 A 3 VAL A 43 VAL A 47 0 SHEET 2 A 3 MET A 79 GLU A 86 -1 O THR A 82 N PHE A 46 SHEET 3 A 3 TYR A 97 LYS A 104 -1 N LYS A 98 O ARG A 85 SHEET 1 B 6 LYS A 61 VAL A 63 0 SHEET 2 B 6 CYS A 72 GLN A 74 -1 O CYS A 72 N VAL A 63 SHEET 3 B 6 ILE A 106 VAL A 124 -1 O VAL A 108 N TYR A 73 SHEET 4 B 6 TYR B 297 SER B 323 -1 N HIS B 305 O VAL A 124 SHEET 5 B 6 CYS B 272 GLN B 274 -1 N TYR B 273 O VAL B 308 SHEET 6 B 6 LYS B 261 VAL B 263 -1 O LYS B 261 N GLN B 274 SHEET 1 C 6 LYS A 61 VAL A 63 0 SHEET 2 C 6 CYS A 72 GLN A 74 -1 O CYS A 72 N VAL A 63 SHEET 3 C 6 ILE A 106 VAL A 124 -1 O VAL A 108 N TYR A 73 SHEET 4 C 6 TYR B 297 SER B 323 -1 N HIS B 305 O VAL A 124 SHEET 5 C 6 MET B 279 GLU B 286 -1 N MET B 279 O LYS B 304 SHEET 6 C 6 VAL B 243 VAL B 247 -1 O ASN B 244 N CYS B 284 SHEET 1 D 6 LYS D 661 VAL D 663 0 SHEET 2 D 6 CYS D 672 GLN D 674 -1 O CYS D 672 N VAL D 663 SHEET 3 D 6 ILE D 706 VAL D 724 -1 N VAL D 708 O TYR D 673 SHEET 4 D 6 TYR C 497 SER C 523 -1 N HIS C 505 O VAL D 724 SHEET 5 D 6 CYS C 472 GLN C 474 -1 N TYR C 473 O VAL C 508 SHEET 6 D 6 LYS C 461 VAL C 463 -1 O LYS C 461 N GLN C 474 SHEET 1 E 6 LYS D 661 VAL D 663 0 SHEET 2 E 6 CYS D 672 GLN D 674 -1 O CYS D 672 N VAL D 663 SHEET 3 E 6 ILE D 706 VAL D 724 -1 N VAL D 708 O TYR D 673 SHEET 4 E 6 TYR C 497 SER C 523 -1 N HIS C 505 O VAL D 724 SHEET 5 E 6 MET C 479 GLU C 486 -1 N MET C 479 O LYS C 504 SHEET 6 E 6 VAL C 443 VAL C 447 -1 N ASN C 444 O CYS C 484 SHEET 1 F 3 VAL D 643 VAL D 647 0 SHEET 2 F 3 MET D 679 GLU D 686 -1 N THR D 682 O PHE D 646 SHEET 3 F 3 TYR D 697 LYS D 704 -1 N LYS D 698 O ARG D 685 SSBOND 1 CYS A 26 CYS A 84 1555 1555 2.08 SSBOND 2 CYS A 40 CYS A 95 1555 1555 2.06 SSBOND 3 CYS A 58 CYS A 110 1555 1555 2.09 SSBOND 4 CYS A 65 CYS A 72 1555 1555 2.08 SSBOND 5 CYS B 226 CYS B 284 1555 1555 2.08 SSBOND 6 CYS B 240 CYS B 295 1555 1555 2.04 SSBOND 7 CYS B 258 CYS B 310 1555 1555 2.12 SSBOND 8 CYS B 265 CYS B 272 1555 1555 2.11 SSBOND 9 CYS C 426 CYS C 484 1555 1555 2.09 SSBOND 10 CYS C 440 CYS C 495 1555 1555 2.06 SSBOND 11 CYS C 458 CYS C 510 1555 1555 2.08 SSBOND 12 CYS C 465 CYS C 472 1555 1555 2.08 SSBOND 13 CYS D 626 CYS D 684 1555 1555 2.06 SSBOND 14 CYS D 640 CYS D 695 1555 1555 2.02 SSBOND 15 CYS D 658 CYS D 710 1555 1555 2.10 SSBOND 16 CYS D 665 CYS D 672 1555 1555 2.09 CISPEP 1 TYR A 92 PRO A 93 0 0.69 CISPEP 2 TYR B 292 PRO B 293 0 1.06 CISPEP 3 TYR C 492 PRO C 493 0 0.01 CISPEP 4 TYR D 692 PRO D 693 0 -0.53 SITE 1 AC1 9 GLN A 11 HIS A 12 LYS A 41 HOH A1004 SITE 2 AC1 9 HOH A1252 HOH A1553 HIS B 319 PHE B 320 SITE 3 AC1 9 DG M 752 SITE 1 AC2 10 HIS A 119 PHE A 120 GLN B 211 HIS B 212 SITE 2 AC2 10 LYS B 241 HOH B1074 HOH B1396 HOH B1554 SITE 3 AC2 10 HOH B1555 DG N 754 SITE 1 AC3 8 GLN C 411 HIS C 412 LYS C 441 HOH C1045 SITE 2 AC3 8 HOH C1571 HIS D 719 PHE D 720 DG O 756 SITE 1 AC4 8 HIS C 519 PHE C 520 GLN D 611 HIS D 612 SITE 2 AC4 8 LYS D 641 DG P 758 HOH P1029 HOH P1273 SITE 1 AC5 9 ALA C 405 GLU C 511 ASN D 713 PRO D 714 SITE 2 AC5 9 HOH D1051 HOH D1254 HOH D1355 HOH D1575 SITE 3 AC5 9 HOH D1576 SITE 1 AC6 4 GLN B 301 ALA B 302 ASN B 303 HOH B1442 SITE 1 AC7 2 PRO C 442 HOH C1179 SITE 1 AC8 2 GLN A 69 THR A 70 SITE 1 AC9 7 GLU B 202 ALA B 206 GLU B 209 ARG B 210 SITE 2 AC9 7 GOL B 922 HOH B1307 HOH B1514 SITE 1 BC1 4 SER B 223 THR B 299 THR B 300 GLN B 301 SITE 1 BC2 6 VAL A 124 VAL B 263 ALA B 264 GLN B 274 SITE 2 BC2 6 ILE B 307 HOH B1192 SITE 1 BC3 3 SER A 50 ALA A 52 ASP A 53 SITE 1 BC4 6 GLU D 711 GLY D 712 ASN D 713 HOH D1303 SITE 2 BC4 6 HOH D1581 HOH D1582 SITE 1 BC5 9 ASN A 113 PRO A 114 VAL A 116 GLU B 311 SITE 2 BC5 9 GLY B 312 ASN B 313 GOL B 920 HOH B1056 SITE 3 BC5 9 HOH B1123 SITE 1 BC6 2 ASN C 503 GOL C 912 SITE 1 BC7 5 THR A 78 GOL A 911 THR C 478 ASN C 503 SITE 2 BC7 5 HOH C1157 SITE 1 BC8 4 GLN D 701 ALA D 702 ASN D 703 HOH D1509 SITE 1 BC9 4 ARG B 239 CYS B 240 LYS B 241 PRO B 242 SITE 1 CC1 3 ARG A 39 PRO A 42 HOH A1330 SITE 1 CC2 5 SER D 623 THR D 699 THR D 700 GLN D 701 SITE 2 CC2 5 HOH D1281 SITE 1 CC3 4 SER C 422 THR C 499 THR C 500 GLN C 501 SITE 1 CC4 3 SER A 23 THR A 99 HOH A1062 SITE 1 CC5 3 SER C 450 ASP C 453 HOH C1437 SITE 1 CC6 6 ALA B 204 GLU B 311 ASN B 313 GOL B 910 SITE 2 CC6 6 HOH B1332 HOH B1494 SITE 1 CC7 6 ALA B 256 SER B 259 GLN B 260 HOH B1010 SITE 2 CC7 6 HOH B1348 HOH B1431 SITE 1 CC8 5 GLU B 202 ARG B 210 ASN B 234 GOL B 905 SITE 2 CC8 5 HOH B1269 SITE 1 CC9 5 SER A 77 HOH A1140 HOH A1579 THR C 478 SITE 2 CC9 5 HIS C 505 SITE 1 DC1 4 ASP D 653 ALA D 656 HOH D1021 HOH D1028 CRYST1 83.569 96.341 48.240 90.00 107.50 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011966 0.000000 0.003773 0.00000 SCALE2 0.000000 0.010380 0.000000 0.00000 SCALE3 0.000000 0.000000 0.021736 0.00000