data_1F2Q # _entry.id 1F2Q # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.329 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1F2Q RCSB RCSB011171 WWPDB D_1000011171 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1F2Q _pdbx_database_status.recvd_initial_deposition_date 2000-05-28 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Garman, S.C.' 1 'Kinet, J.P.' 2 'Jardetzky, T.S.' 3 # _citation.id primary _citation.title 'Crystal structure of the human high-affinity IgE receptor.' _citation.journal_abbrev 'Cell(Cambridge,Mass.)' _citation.journal_volume 95 _citation.page_first 951 _citation.page_last 961 _citation.year 1998 _citation.journal_id_ASTM CELLB5 _citation.country US _citation.journal_id_ISSN 0092-8674 _citation.journal_id_CSD 0998 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 9875849 _citation.pdbx_database_id_DOI '10.1016/S0092-8674(00)81719-5' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Garman, S.C.' 1 ? primary 'Kinet, J.P.' 2 ? primary 'Jardetzky, T.S.' 3 ? # _cell.entry_id 1F2Q _cell.length_a 88.590 _cell.length_b 69.640 _cell.length_c 49.360 _cell.angle_alpha 90.00 _cell.angle_beta 116.69 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1F2Q _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIGH AFFINITY IMMUNOGLOBULIN EPSILON RECEPTOR ALPHA-SUBUNIT' 20462.738 1 ? ? 'EXTRACELLULAR DOMAIN' ? 2 branched man 'alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose' 586.542 2 ? ? ? ? 3 non-polymer man 2-acetamido-2-deoxy-beta-D-glucopyranose 221.208 1 ? ? ? ? 4 water nat water 18.015 73 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'FC-EPSILON RI-ALPHA' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVY LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDY ESEPLNITVIKAPREK ; _entity_poly.pdbx_seq_one_letter_code_can ;VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKFEDSGEYKCQHQQVNESEPVY LEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDY ESEPLNITVIKAPREK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 VAL n 1 2 PRO n 1 3 GLN n 1 4 LYS n 1 5 PRO n 1 6 LYS n 1 7 VAL n 1 8 SER n 1 9 LEU n 1 10 ASN n 1 11 PRO n 1 12 PRO n 1 13 TRP n 1 14 ASN n 1 15 ARG n 1 16 ILE n 1 17 PHE n 1 18 LYS n 1 19 GLY n 1 20 GLU n 1 21 ASN n 1 22 VAL n 1 23 THR n 1 24 LEU n 1 25 THR n 1 26 CYS n 1 27 ASN n 1 28 GLY n 1 29 ASN n 1 30 ASN n 1 31 PHE n 1 32 PHE n 1 33 GLU n 1 34 VAL n 1 35 SER n 1 36 SER n 1 37 THR n 1 38 LYS n 1 39 TRP n 1 40 PHE n 1 41 HIS n 1 42 ASN n 1 43 GLY n 1 44 SER n 1 45 LEU n 1 46 SER n 1 47 GLU n 1 48 GLU n 1 49 THR n 1 50 ASN n 1 51 SER n 1 52 SER n 1 53 LEU n 1 54 ASN n 1 55 ILE n 1 56 VAL n 1 57 ASN n 1 58 ALA n 1 59 LYS n 1 60 PHE n 1 61 GLU n 1 62 ASP n 1 63 SER n 1 64 GLY n 1 65 GLU n 1 66 TYR n 1 67 LYS n 1 68 CYS n 1 69 GLN n 1 70 HIS n 1 71 GLN n 1 72 GLN n 1 73 VAL n 1 74 ASN n 1 75 GLU n 1 76 SER n 1 77 GLU n 1 78 PRO n 1 79 VAL n 1 80 TYR n 1 81 LEU n 1 82 GLU n 1 83 VAL n 1 84 PHE n 1 85 SER n 1 86 ASP n 1 87 TRP n 1 88 LEU n 1 89 LEU n 1 90 LEU n 1 91 GLN n 1 92 ALA n 1 93 SER n 1 94 ALA n 1 95 GLU n 1 96 VAL n 1 97 VAL n 1 98 MET n 1 99 GLU n 1 100 GLY n 1 101 GLN n 1 102 PRO n 1 103 LEU n 1 104 PHE n 1 105 LEU n 1 106 ARG n 1 107 CYS n 1 108 HIS n 1 109 GLY n 1 110 TRP n 1 111 ARG n 1 112 ASN n 1 113 TRP n 1 114 ASP n 1 115 VAL n 1 116 TYR n 1 117 LYS n 1 118 VAL n 1 119 ILE n 1 120 TYR n 1 121 TYR n 1 122 LYS n 1 123 ASP n 1 124 GLY n 1 125 GLU n 1 126 ALA n 1 127 LEU n 1 128 LYS n 1 129 TYR n 1 130 TRP n 1 131 TYR n 1 132 GLU n 1 133 ASN n 1 134 HIS n 1 135 ASN n 1 136 ILE n 1 137 SER n 1 138 ILE n 1 139 THR n 1 140 ASN n 1 141 ALA n 1 142 THR n 1 143 VAL n 1 144 GLU n 1 145 ASP n 1 146 SER n 1 147 GLY n 1 148 THR n 1 149 TYR n 1 150 TYR n 1 151 CYS n 1 152 THR n 1 153 GLY n 1 154 LYS n 1 155 VAL n 1 156 TRP n 1 157 GLN n 1 158 LEU n 1 159 ASP n 1 160 TYR n 1 161 GLU n 1 162 SER n 1 163 GLU n 1 164 PRO n 1 165 LEU n 1 166 ASN n 1 167 ILE n 1 168 THR n 1 169 VAL n 1 170 ILE n 1 171 LYS n 1 172 ALA n 1 173 PRO n 1 174 ARG n 1 175 GLU n 1 176 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'cabbage looper' _entity_src_gen.pdbx_host_org_scientific_name 'Trichoplusia ni' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7111 _entity_src_gen.host_org_genus Trichoplusia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line HI-5 _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type BACULOVIRUS _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PVL1392 _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code FCEA_HUMAN _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P12319 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1F2Q _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 176 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P12319 _struct_ref_seq.db_align_beg 26 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 201 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 176 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MAN 'D-saccharide, alpha linking' . alpha-D-mannopyranose ? 'C6 H12 O6' 180.156 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 NAG 'D-saccharide, beta linking' . 2-acetamido-2-deoxy-beta-D-glucopyranose ? 'C8 H15 N O6' 221.208 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1F2Q _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 62.98 _exptl_crystal.density_Matthews 3.32 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 8.5 _exptl_crystal_grow.temp 297 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'PEG 4000, Tris, Sodium Acetate, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 297K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-06-11 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.08 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'SSRL BEAMLINE BL7-1' _diffrn_source.pdbx_wavelength 1.08 _diffrn_source.pdbx_synchrotron_site SSRL _diffrn_source.pdbx_synchrotron_beamline BL7-1 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1F2Q _reflns.observed_criterion_sigma_I 0 _reflns.observed_criterion_sigma_F 0 _reflns.d_resolution_low 20 _reflns.d_resolution_high 2.4 _reflns.number_obs 10247 _reflns.number_all 10247 _reflns.percent_possible_obs 96.8 _reflns.pdbx_Rmerge_I_obs 0.057 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.8 _reflns.B_iso_Wilson_estimate 46.1 _reflns.pdbx_redundancy 3.9 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 2.40 _reflns_shell.d_res_low 2.49 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 92.5 _reflns_shell.Rmerge_I_obs 0.226 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 3.4 _reflns_shell.number_unique_all 977 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 1F2Q _refine.ls_number_reflns_obs 10247 _refine.ls_number_reflns_all 10247 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF 913683.66 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 17.43 _refine.ls_d_res_high 2.40 _refine.ls_percent_reflns_obs 97.0 _refine.ls_R_factor_obs 0.226 _refine.ls_R_factor_all 0.226 _refine.ls_R_factor_R_work 0.226 _refine.ls_R_factor_R_free 0.254 _refine.ls_R_factor_R_free_error 0.009 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 8.6 _refine.ls_number_reflns_R_free 880 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 67.1 _refine.aniso_B[1][1] 30.48 _refine.aniso_B[2][2] -16.37 _refine.aniso_B[3][3] -14.11 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 18.52 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.343 _refine.solvent_model_param_bsol 53.15 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'maximum likelihood refinement against Hendrickson-Lattman coefficient targets' _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1F2Q _refine_analyze.Luzzati_coordinate_error_obs 0.34 _refine_analyze.Luzzati_sigma_a_obs 0.48 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.59 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1371 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 92 _refine_hist.number_atoms_solvent 73 _refine_hist.number_atoms_total 1536 _refine_hist.d_res_high 2.40 _refine_hist.d_res_low 17.43 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.007 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 27.0 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 0.81 ? ? ? 'X-RAY DIFFRACTION' ? c_mcbond_it 4.35 4.00 ? ? 'X-RAY DIFFRACTION' ? c_mcangle_it 6.73 6.00 ? ? 'X-RAY DIFFRACTION' ? c_scbond_it 6.60 6.00 ? ? 'X-RAY DIFFRACTION' ? c_scangle_it 9.09 8.00 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 2.40 _refine_ls_shell.d_res_low 2.55 _refine_ls_shell.number_reflns_R_work 1486 _refine_ls_shell.R_factor_R_work 0.377 _refine_ls_shell.percent_reflns_obs 94.4 _refine_ls_shell.R_factor_R_free 0.453 _refine_ls_shell.R_factor_R_free_error 0.036 _refine_ls_shell.percent_reflns_R_free 9.6 _refine_ls_shell.number_reflns_R_free 158 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PROTEIN_REP.PARAM PROTEIN.TOP 'X-RAY DIFFRACTION' 2 CARBOHYDRATE.PARAM CARBOHYDRATE.TOP 'X-RAY DIFFRACTION' 3 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1F2Q _struct.title 'CRYSTAL STRUCTURE OF THE HUMAN HIGH-AFFINITY IGE RECEPTOR' _struct.pdbx_descriptor 'HUMAN HIGH-AFFINITY IGE RECEPTOR' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1F2Q _struct_keywords.pdbx_keywords 'IMMUNE SYSTEM' _struct_keywords.text 'Immunoglobulin Fold, Glycoprotein, Receptor, IgE-binding Protein, IMMUNE SYSTEM' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 4 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 LYS A 59 ? SER A 63 ? LYS A 59 SER A 63 5 ? 5 HELX_P HELX_P2 2 ARG A 111 ? TRP A 113 ? ARG A 111 TRP A 113 5 ? 3 HELX_P HELX_P3 3 THR A 142 ? SER A 146 ? THR A 142 SER A 146 5 ? 5 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role disulf1 disulf ? ? A CYS 26 SG ? ? ? 1_555 A CYS 68 SG ? ? A CYS 26 A CYS 68 1_555 ? ? ? ? ? ? ? 2.039 ? ? disulf2 disulf ? ? A CYS 107 SG ? ? ? 1_555 A CYS 151 SG ? ? A CYS 107 A CYS 151 1_555 ? ? ? ? ? ? ? 2.052 ? ? covale1 covale one ? A ASN 21 ND2 ? ? ? 1_555 D NAG . C1 ? ? A ASN 21 A NAG 221 1_555 ? ? ? ? ? ? ? 1.454 ? N-Glycosylation covale2 covale one ? A ASN 42 ND2 ? ? ? 1_555 B NAG . C1 ? ? A ASN 42 B NAG 1 1_555 ? ? ? ? ? ? ? 1.452 ? N-Glycosylation covale3 covale one ? A ASN 166 ND2 ? ? ? 1_555 C NAG . C1 ? ? A ASN 166 C NAG 1 1_555 ? ? ? ? ? ? ? 1.469 ? N-Glycosylation covale4 covale both ? B NAG . O4 ? ? ? 1_555 B NAG . C1 ? ? B NAG 1 B NAG 2 1_555 ? ? ? ? ? ? ? 1.387 ? ? covale5 covale both ? B NAG . O4 ? ? ? 1_555 B MAN . C1 ? ? B NAG 2 B MAN 3 1_555 ? ? ? ? ? ? ? 1.389 ? ? covale6 covale both ? C NAG . O4 ? ? ? 1_555 C NAG . C1 ? ? C NAG 1 C NAG 2 1_555 ? ? ? ? ? ? ? 1.397 ? ? covale7 covale both ? C NAG . O4 ? ? ? 1_555 C MAN . C1 ? ? C NAG 2 C MAN 3 1_555 ? ? ? ? ? ? ? 1.396 ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference disulf ? ? covale ? ? # _struct_mon_prot_cis.pdbx_id 1 _struct_mon_prot_cis.label_comp_id ASN _struct_mon_prot_cis.label_seq_id 10 _struct_mon_prot_cis.label_asym_id A _struct_mon_prot_cis.label_alt_id . _struct_mon_prot_cis.pdbx_PDB_ins_code ? _struct_mon_prot_cis.auth_comp_id ASN _struct_mon_prot_cis.auth_seq_id 10 _struct_mon_prot_cis.auth_asym_id A _struct_mon_prot_cis.pdbx_label_comp_id_2 PRO _struct_mon_prot_cis.pdbx_label_seq_id_2 11 _struct_mon_prot_cis.pdbx_label_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_ins_code_2 ? _struct_mon_prot_cis.pdbx_auth_comp_id_2 PRO _struct_mon_prot_cis.pdbx_auth_seq_id_2 11 _struct_mon_prot_cis.pdbx_auth_asym_id_2 A _struct_mon_prot_cis.pdbx_PDB_model_num 1 _struct_mon_prot_cis.pdbx_omega_angle -0.28 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 5 ? C ? 3 ? D ? 4 ? E ? 5 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel C 1 2 ? anti-parallel C 2 3 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel E 1 2 ? anti-parallel E 2 3 ? anti-parallel E 3 4 ? anti-parallel E 4 5 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 SER A 8 ? ASN A 10 ? SER A 8 ASN A 10 A 2 VAL A 22 ? THR A 25 ? VAL A 22 THR A 25 A 3 SER A 52 ? ILE A 55 ? SER A 52 ILE A 55 B 1 ARG A 15 ? PHE A 17 ? ARG A 15 PHE A 17 B 2 VAL A 79 ? PHE A 84 ? VAL A 79 PHE A 84 B 3 GLY A 64 ? GLN A 69 ? GLY A 64 GLN A 69 B 4 LYS A 38 ? HIS A 41 ? LYS A 38 HIS A 41 B 5 SER A 44 ? LEU A 45 ? SER A 44 LEU A 45 C 1 LEU A 88 ? ALA A 92 ? LEU A 88 ALA A 92 C 2 LEU A 103 ? GLY A 109 ? LEU A 103 GLY A 109 C 3 ASN A 135 ? ILE A 138 ? ASN A 135 ILE A 138 D 1 GLU A 125 ? ALA A 126 ? GLU A 125 ALA A 126 D 2 VAL A 115 ? LYS A 122 ? VAL A 115 LYS A 122 D 3 GLY A 147 ? VAL A 155 ? GLY A 147 VAL A 155 D 4 LEU A 158 ? GLU A 161 ? LEU A 158 GLU A 161 E 1 GLU A 125 ? ALA A 126 ? GLU A 125 ALA A 126 E 2 VAL A 115 ? LYS A 122 ? VAL A 115 LYS A 122 E 3 GLY A 147 ? VAL A 155 ? GLY A 147 VAL A 155 E 4 LEU A 165 ? ILE A 170 ? LEU A 165 ILE A 170 E 5 VAL A 96 ? MET A 98 ? VAL A 96 MET A 98 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O ASN A 10 ? O ASN A 10 N THR A 23 ? N THR A 23 A 2 3 O LEU A 24 ? O LEU A 24 N LEU A 53 ? N LEU A 53 B 1 2 N ILE A 16 ? N ILE A 16 O GLU A 82 ? O GLU A 82 B 2 3 O LEU A 81 ? O LEU A 81 N GLY A 64 ? N GLY A 64 B 3 4 O GLN A 69 ? O GLN A 69 N LYS A 38 ? N LYS A 38 B 4 5 N HIS A 41 ? N HIS A 41 O SER A 44 ? O SER A 44 C 1 2 N GLN A 91 ? N GLN A 91 O ARG A 106 ? O ARG A 106 C 2 3 N LEU A 105 ? N LEU A 105 O ILE A 136 ? O ILE A 136 D 1 2 O GLU A 125 ? O GLU A 125 N LYS A 122 ? N LYS A 122 D 2 3 N TYR A 121 ? N TYR A 121 O TYR A 150 ? O TYR A 150 D 3 4 O VAL A 155 ? O VAL A 155 N LEU A 158 ? N LEU A 158 E 1 2 O GLU A 125 ? O GLU A 125 N LYS A 122 ? N LYS A 122 E 2 3 N TYR A 121 ? N TYR A 121 O TYR A 150 ? O TYR A 150 E 3 4 O TYR A 149 ? O TYR A 149 N LEU A 165 ? N LEU A 165 E 4 5 N ILE A 170 ? N ILE A 170 O VAL A 97 ? O VAL A 97 # _database_PDB_matrix.entry_id 1F2Q _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1F2Q _atom_sites.fract_transf_matrix[1][1] 0.011288 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.005675 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.014360 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022675 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _database_PDB_caveat.id _database_PDB_caveat.text 1 'MAN B 3 HAS WRONG CHIRALITY AT ATOM C1' 2 'MAN C 3 HAS WRONG CHIRALITY AT ATOM C1' # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 VAL 1 1 ? ? ? A . n A 1 2 PRO 2 2 ? ? ? A . n A 1 3 GLN 3 3 ? ? ? A . n A 1 4 LYS 4 4 4 LYS LYS A . n A 1 5 PRO 5 5 5 PRO PRO A . n A 1 6 LYS 6 6 6 LYS LYS A . n A 1 7 VAL 7 7 7 VAL VAL A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 LEU 9 9 9 LEU LEU A . n A 1 10 ASN 10 10 10 ASN ASN A . n A 1 11 PRO 11 11 11 PRO PRO A . n A 1 12 PRO 12 12 12 PRO PRO A . n A 1 13 TRP 13 13 13 TRP TRP A . n A 1 14 ASN 14 14 14 ASN ASN A . n A 1 15 ARG 15 15 15 ARG ARG A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 PHE 17 17 17 PHE PHE A . n A 1 18 LYS 18 18 18 LYS LYS A . n A 1 19 GLY 19 19 19 GLY GLY A . n A 1 20 GLU 20 20 20 GLU GLU A . n A 1 21 ASN 21 21 21 ASN ASN A . n A 1 22 VAL 22 22 22 VAL VAL A . n A 1 23 THR 23 23 23 THR THR A . n A 1 24 LEU 24 24 24 LEU LEU A . n A 1 25 THR 25 25 25 THR THR A . n A 1 26 CYS 26 26 26 CYS CYS A . n A 1 27 ASN 27 27 27 ASN ASN A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 ASN 29 29 29 ASN ASN A . n A 1 30 ASN 30 30 30 ASN ASN A . n A 1 31 PHE 31 31 31 PHE PHE A . n A 1 32 PHE 32 32 ? ? ? A . n A 1 33 GLU 33 33 ? ? ? A . n A 1 34 VAL 34 34 ? ? ? A . n A 1 35 SER 35 35 ? ? ? A . n A 1 36 SER 36 36 36 SER SER A . n A 1 37 THR 37 37 37 THR THR A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 TRP 39 39 39 TRP TRP A . n A 1 40 PHE 40 40 40 PHE PHE A . n A 1 41 HIS 41 41 41 HIS HIS A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 GLY 43 43 43 GLY GLY A . n A 1 44 SER 44 44 44 SER SER A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 GLU 47 47 47 GLU GLU A . n A 1 48 GLU 48 48 48 GLU GLU A . n A 1 49 THR 49 49 49 THR THR A . n A 1 50 ASN 50 50 50 ASN ASN A . n A 1 51 SER 51 51 51 SER SER A . n A 1 52 SER 52 52 52 SER SER A . n A 1 53 LEU 53 53 53 LEU LEU A . n A 1 54 ASN 54 54 54 ASN ASN A . n A 1 55 ILE 55 55 55 ILE ILE A . n A 1 56 VAL 56 56 56 VAL VAL A . n A 1 57 ASN 57 57 57 ASN ASN A . n A 1 58 ALA 58 58 58 ALA ALA A . n A 1 59 LYS 59 59 59 LYS LYS A . n A 1 60 PHE 60 60 60 PHE PHE A . n A 1 61 GLU 61 61 61 GLU GLU A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 GLY 64 64 64 GLY GLY A . n A 1 65 GLU 65 65 65 GLU GLU A . n A 1 66 TYR 66 66 66 TYR TYR A . n A 1 67 LYS 67 67 67 LYS LYS A . n A 1 68 CYS 68 68 68 CYS CYS A . n A 1 69 GLN 69 69 69 GLN GLN A . n A 1 70 HIS 70 70 70 HIS HIS A . n A 1 71 GLN 71 71 71 GLN GLN A . n A 1 72 GLN 72 72 72 GLN GLN A . n A 1 73 VAL 73 73 73 VAL VAL A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 GLU 75 75 75 GLU GLU A . n A 1 76 SER 76 76 76 SER SER A . n A 1 77 GLU 77 77 77 GLU GLU A . n A 1 78 PRO 78 78 78 PRO PRO A . n A 1 79 VAL 79 79 79 VAL VAL A . n A 1 80 TYR 80 80 80 TYR TYR A . n A 1 81 LEU 81 81 81 LEU LEU A . n A 1 82 GLU 82 82 82 GLU GLU A . n A 1 83 VAL 83 83 83 VAL VAL A . n A 1 84 PHE 84 84 84 PHE PHE A . n A 1 85 SER 85 85 85 SER SER A . n A 1 86 ASP 86 86 86 ASP ASP A . n A 1 87 TRP 87 87 87 TRP TRP A . n A 1 88 LEU 88 88 88 LEU LEU A . n A 1 89 LEU 89 89 89 LEU LEU A . n A 1 90 LEU 90 90 90 LEU LEU A . n A 1 91 GLN 91 91 91 GLN GLN A . n A 1 92 ALA 92 92 92 ALA ALA A . n A 1 93 SER 93 93 93 SER SER A . n A 1 94 ALA 94 94 94 ALA ALA A . n A 1 95 GLU 95 95 95 GLU GLU A . n A 1 96 VAL 96 96 96 VAL VAL A . n A 1 97 VAL 97 97 97 VAL VAL A . n A 1 98 MET 98 98 98 MET MET A . n A 1 99 GLU 99 99 99 GLU GLU A . n A 1 100 GLY 100 100 100 GLY GLY A . n A 1 101 GLN 101 101 101 GLN GLN A . n A 1 102 PRO 102 102 102 PRO PRO A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 PHE 104 104 104 PHE PHE A . n A 1 105 LEU 105 105 105 LEU LEU A . n A 1 106 ARG 106 106 106 ARG ARG A . n A 1 107 CYS 107 107 107 CYS CYS A . n A 1 108 HIS 108 108 108 HIS HIS A . n A 1 109 GLY 109 109 109 GLY GLY A . n A 1 110 TRP 110 110 110 TRP TRP A . n A 1 111 ARG 111 111 111 ARG ARG A . n A 1 112 ASN 112 112 112 ASN ASN A . n A 1 113 TRP 113 113 113 TRP TRP A . n A 1 114 ASP 114 114 114 ASP ASP A . n A 1 115 VAL 115 115 115 VAL VAL A . n A 1 116 TYR 116 116 116 TYR TYR A . n A 1 117 LYS 117 117 117 LYS LYS A . n A 1 118 VAL 118 118 118 VAL VAL A . n A 1 119 ILE 119 119 119 ILE ILE A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 TYR 121 121 121 TYR TYR A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ASP 123 123 123 ASP ASP A . n A 1 124 GLY 124 124 124 GLY GLY A . n A 1 125 GLU 125 125 125 GLU GLU A . n A 1 126 ALA 126 126 126 ALA ALA A . n A 1 127 LEU 127 127 127 LEU LEU A . n A 1 128 LYS 128 128 128 LYS LYS A . n A 1 129 TYR 129 129 129 TYR TYR A . n A 1 130 TRP 130 130 130 TRP TRP A . n A 1 131 TYR 131 131 131 TYR TYR A . n A 1 132 GLU 132 132 132 GLU GLU A . n A 1 133 ASN 133 133 133 ASN ASN A . n A 1 134 HIS 134 134 134 HIS HIS A . n A 1 135 ASN 135 135 135 ASN ASN A . n A 1 136 ILE 136 136 136 ILE ILE A . n A 1 137 SER 137 137 137 SER SER A . n A 1 138 ILE 138 138 138 ILE ILE A . n A 1 139 THR 139 139 139 THR THR A . n A 1 140 ASN 140 140 140 ASN ASN A . n A 1 141 ALA 141 141 141 ALA ALA A . n A 1 142 THR 142 142 142 THR THR A . n A 1 143 VAL 143 143 143 VAL VAL A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 ASP 145 145 145 ASP ASP A . n A 1 146 SER 146 146 146 SER SER A . n A 1 147 GLY 147 147 147 GLY GLY A . n A 1 148 THR 148 148 148 THR THR A . n A 1 149 TYR 149 149 149 TYR TYR A . n A 1 150 TYR 150 150 150 TYR TYR A . n A 1 151 CYS 151 151 151 CYS CYS A . n A 1 152 THR 152 152 152 THR THR A . n A 1 153 GLY 153 153 153 GLY GLY A . n A 1 154 LYS 154 154 154 LYS LYS A . n A 1 155 VAL 155 155 155 VAL VAL A . n A 1 156 TRP 156 156 156 TRP TRP A . n A 1 157 GLN 157 157 157 GLN GLN A . n A 1 158 LEU 158 158 158 LEU LEU A . n A 1 159 ASP 159 159 159 ASP ASP A . n A 1 160 TYR 160 160 160 TYR TYR A . n A 1 161 GLU 161 161 161 GLU GLU A . n A 1 162 SER 162 162 162 SER SER A . n A 1 163 GLU 163 163 163 GLU GLU A . n A 1 164 PRO 164 164 164 PRO PRO A . n A 1 165 LEU 165 165 165 LEU LEU A . n A 1 166 ASN 166 166 166 ASN ASN A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 THR 168 168 168 THR THR A . n A 1 169 VAL 169 169 169 VAL VAL A . n A 1 170 ILE 170 170 170 ILE ILE A . n A 1 171 LYS 171 171 171 LYS LYS A . n A 1 172 ALA 172 172 172 ALA ALA A . n A 1 173 PRO 173 173 173 PRO PRO A . n A 1 174 ARG 174 174 174 ARG ARG A . n A 1 175 GLU 175 175 ? ? ? A . n A 1 176 LYS 176 176 ? ? ? A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code D 3 NAG 1 221 221 NAG NAG A . E 4 HOH 1 1000 1000 HOH WAT A . E 4 HOH 2 1001 1001 HOH WAT A . E 4 HOH 3 1002 1002 HOH WAT A . E 4 HOH 4 1003 1003 HOH WAT A . E 4 HOH 5 1004 1004 HOH WAT A . E 4 HOH 6 1005 1005 HOH WAT A . E 4 HOH 7 1006 1006 HOH WAT A . E 4 HOH 8 1007 1007 HOH WAT A . E 4 HOH 9 1008 1008 HOH WAT A . E 4 HOH 10 1009 1009 HOH WAT A . E 4 HOH 11 1010 1010 HOH WAT A . E 4 HOH 12 1011 1011 HOH WAT A . E 4 HOH 13 1012 1012 HOH WAT A . E 4 HOH 14 1013 1013 HOH WAT A . E 4 HOH 15 1014 1014 HOH WAT A . E 4 HOH 16 1015 1015 HOH WAT A . E 4 HOH 17 1016 1016 HOH WAT A . E 4 HOH 18 1017 1017 HOH WAT A . E 4 HOH 19 1018 1018 HOH WAT A . E 4 HOH 20 1019 1019 HOH WAT A . E 4 HOH 21 1020 1020 HOH WAT A . E 4 HOH 22 1021 1021 HOH WAT A . E 4 HOH 23 1022 1022 HOH WAT A . E 4 HOH 24 1023 1023 HOH WAT A . E 4 HOH 25 1024 1024 HOH WAT A . E 4 HOH 26 1025 1025 HOH WAT A . E 4 HOH 27 1026 1026 HOH WAT A . E 4 HOH 28 1027 1027 HOH WAT A . E 4 HOH 29 1028 1028 HOH WAT A . E 4 HOH 30 1029 1029 HOH WAT A . E 4 HOH 31 1030 1030 HOH WAT A . E 4 HOH 32 1031 1031 HOH WAT A . E 4 HOH 33 1032 1032 HOH WAT A . E 4 HOH 34 1033 1033 HOH WAT A . E 4 HOH 35 1034 1034 HOH WAT A . E 4 HOH 36 1035 1035 HOH WAT A . E 4 HOH 37 1036 1036 HOH WAT A . E 4 HOH 38 1037 1037 HOH WAT A . E 4 HOH 39 1038 1038 HOH WAT A . E 4 HOH 40 1039 1039 HOH WAT A . E 4 HOH 41 1040 1040 HOH WAT A . E 4 HOH 42 1041 1041 HOH WAT A . E 4 HOH 43 1042 1042 HOH WAT A . E 4 HOH 44 1043 1043 HOH WAT A . E 4 HOH 45 1044 1044 HOH WAT A . E 4 HOH 46 1045 1045 HOH WAT A . E 4 HOH 47 1046 1046 HOH WAT A . E 4 HOH 48 1047 1047 HOH WAT A . E 4 HOH 49 1048 1048 HOH WAT A . E 4 HOH 50 1049 1049 HOH WAT A . E 4 HOH 51 1050 1050 HOH WAT A . E 4 HOH 52 1051 1051 HOH WAT A . E 4 HOH 53 1052 1052 HOH WAT A . E 4 HOH 54 1053 1053 HOH WAT A . E 4 HOH 55 1054 1054 HOH WAT A . E 4 HOH 56 1055 1055 HOH WAT A . E 4 HOH 57 1056 1056 HOH WAT A . E 4 HOH 58 1057 1057 HOH WAT A . E 4 HOH 59 1058 1058 HOH WAT A . E 4 HOH 60 1059 1059 HOH WAT A . E 4 HOH 61 1060 1060 HOH WAT A . E 4 HOH 62 1061 1061 HOH WAT A . E 4 HOH 63 1062 1062 HOH WAT A . E 4 HOH 64 1063 1063 HOH WAT A . E 4 HOH 65 1064 1064 HOH WAT A . E 4 HOH 66 1065 1065 HOH WAT A . E 4 HOH 67 1066 1066 HOH WAT A . E 4 HOH 68 1067 1067 HOH WAT A . E 4 HOH 69 1068 1068 HOH WAT A . E 4 HOH 70 1069 1069 HOH WAT A . E 4 HOH 71 1070 1070 HOH WAT A . E 4 HOH 72 1071 1071 HOH WAT A . E 4 HOH 73 1072 1072 HOH WAT A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A ASN 42 A ASN 42 ? ASN 'GLYCOSYLATION SITE' 2 A ASN 21 A ASN 21 ? ASN 'GLYCOSYLATION SITE' 3 A ASN 166 A ASN 166 ? ASN 'GLYCOSYLATION SITE' # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-06-08 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 2 0 2020-07-29 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description _pdbx_audit_revision_details.details 1 1 'Structure model' repository 'Initial release' ? ? 2 4 'Structure model' repository Remediation 'Carbohydrate remediation' ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Atomic model' 6 4 'Structure model' 'Data collection' 7 4 'Structure model' 'Derived calculations' 8 4 'Structure model' 'Structure summary' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' atom_site 2 4 'Structure model' chem_comp 3 4 'Structure model' database_PDB_caveat 4 4 'Structure model' entity 5 4 'Structure model' pdbx_branch_scheme 6 4 'Structure model' pdbx_chem_comp_identifier 7 4 'Structure model' pdbx_entity_branch 8 4 'Structure model' pdbx_entity_branch_descriptor 9 4 'Structure model' pdbx_entity_branch_link 10 4 'Structure model' pdbx_entity_branch_list 11 4 'Structure model' pdbx_entity_nonpoly 12 4 'Structure model' pdbx_nonpoly_scheme 13 4 'Structure model' pdbx_struct_assembly_gen 14 4 'Structure model' pdbx_validate_chiral 15 4 'Structure model' struct_asym 16 4 'Structure model' struct_conn 17 4 'Structure model' struct_site 18 4 'Structure model' struct_site_gen # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_atom_site.B_iso_or_equiv' 2 4 'Structure model' '_atom_site.Cartn_x' 3 4 'Structure model' '_atom_site.Cartn_y' 4 4 'Structure model' '_atom_site.Cartn_z' 5 4 'Structure model' '_atom_site.auth_asym_id' 6 4 'Structure model' '_atom_site.auth_atom_id' 7 4 'Structure model' '_atom_site.auth_comp_id' 8 4 'Structure model' '_atom_site.auth_seq_id' 9 4 'Structure model' '_atom_site.label_asym_id' 10 4 'Structure model' '_atom_site.label_atom_id' 11 4 'Structure model' '_atom_site.label_comp_id' 12 4 'Structure model' '_atom_site.label_entity_id' 13 4 'Structure model' '_atom_site.type_symbol' 14 4 'Structure model' '_chem_comp.name' 15 4 'Structure model' '_chem_comp.type' 16 4 'Structure model' '_entity.formula_weight' 17 4 'Structure model' '_entity.pdbx_description' 18 4 'Structure model' '_entity.pdbx_number_of_molecules' 19 4 'Structure model' '_entity.type' 20 4 'Structure model' '_pdbx_struct_assembly_gen.asym_id_list' 21 4 'Structure model' '_pdbx_validate_chiral.auth_asym_id' 22 4 'Structure model' '_pdbx_validate_chiral.auth_seq_id' 23 4 'Structure model' '_struct_conn.pdbx_dist_value' 24 4 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 25 4 'Structure model' '_struct_conn.pdbx_role' 26 4 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 27 4 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 28 4 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 29 4 'Structure model' '_struct_conn.ptnr1_label_asym_id' 30 4 'Structure model' '_struct_conn.ptnr1_label_atom_id' 31 4 'Structure model' '_struct_conn.ptnr1_label_comp_id' 32 4 'Structure model' '_struct_conn.ptnr1_label_seq_id' 33 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 34 4 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 35 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 36 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 37 4 'Structure model' '_struct_conn.ptnr2_label_atom_id' 38 4 'Structure model' '_struct_conn.ptnr2_label_comp_id' 39 4 'Structure model' '_struct_conn.ptnr2_label_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 DM 'model building' . ? 3 CNS refinement 0.4 ? 4 DM phasing . ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASN A 27 ? ? -24.74 164.87 2 1 ASN A 57 ? ? 46.13 70.57 3 1 GLN A 71 ? ? -64.04 21.95 4 1 VAL A 73 ? ? 44.79 7.77 5 1 TYR A 129 ? ? -42.72 154.27 6 1 HIS A 134 ? ? 42.88 4.56 7 1 TRP A 156 ? ? 61.06 -114.83 8 1 PRO A 173 ? ? -43.16 156.09 # loop_ _pdbx_validate_chiral.id _pdbx_validate_chiral.PDB_model_num _pdbx_validate_chiral.auth_atom_id _pdbx_validate_chiral.label_alt_id _pdbx_validate_chiral.auth_asym_id _pdbx_validate_chiral.auth_comp_id _pdbx_validate_chiral.auth_seq_id _pdbx_validate_chiral.PDB_ins_code _pdbx_validate_chiral.details _pdbx_validate_chiral.omega 1 1 C1 ? B MAN 3 ? 'WRONG HAND' . 2 1 C1 ? C MAN 3 ? 'WRONG HAND' . # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A VAL 1 ? A VAL 1 2 1 Y 1 A PRO 2 ? A PRO 2 3 1 Y 1 A GLN 3 ? A GLN 3 4 1 Y 1 A PHE 32 ? A PHE 32 5 1 Y 1 A GLU 33 ? A GLU 33 6 1 Y 1 A VAL 34 ? A VAL 34 7 1 Y 1 A SER 35 ? A SER 35 8 1 Y 1 A GLU 175 ? A GLU 175 9 1 Y 1 A LYS 176 ? A LYS 176 # loop_ _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_mon_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.hetero B 2 NAG 1 B NAG 1 C NAG 242 n B 2 NAG 2 B NAG 2 C NAG 243 n B 2 MAN 3 B MAN 3 C MAN 244 n C 2 NAG 1 C NAG 1 C NAG 366 n C 2 NAG 2 C NAG 2 C NAG 367 n C 2 MAN 3 C MAN 3 C MAN 368 n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier MAN 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DManpa MAN 'COMMON NAME' GMML 1.0 a-D-mannopyranose MAN 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 a-D-Manp MAN 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 Man NAG 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1.0 DGlcpNAcb NAG 'COMMON NAME' GMML 1.0 N-acetyl-b-D-glucopyranosamine NAG 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1.0 b-D-GlcpNAc NAG 'SNFG CARBOHYDRATE SYMBOL' GMML 1.0 GlcNAc # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_descriptor.ordinal _pdbx_entity_branch_descriptor.entity_id _pdbx_entity_branch_descriptor.descriptor _pdbx_entity_branch_descriptor.type _pdbx_entity_branch_descriptor.program _pdbx_entity_branch_descriptor.program_version 1 2 DManpa1-4DGlcpNAcb1-4DGlcpNAcb1- 'Glycam Condensed Sequence' GMML 1.0 2 2 'WURCS=2.0/2,3,2/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1a_1-5]/1-1-2/a4-b1_b4-c1' WURCS PDB2Glycan 1.1.0 3 2 '[]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-GlcpNAc]{[(4+1)][b-D-Manp]{}}}}' LINUCS PDB-CARE ? # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.value_order _pdbx_entity_branch_link.details 1 2 2 NAG C1 O1 1 NAG O4 HO4 sing ? 2 2 3 MAN C1 O1 2 NAG O4 HO4 sing ? # loop_ _pdbx_entity_branch_list.entity_id _pdbx_entity_branch_list.comp_id _pdbx_entity_branch_list.num _pdbx_entity_branch_list.hetero 2 NAG 1 n 2 NAG 2 n 2 MAN 3 n # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 2-acetamido-2-deoxy-beta-D-glucopyranose NAG 4 water HOH #