HEADER TRANSCRIPTION 07-JUN-00 1F43 TITLE SOLUTION STRUCTURE OF THE MATA1 HOMEODOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: MATING-TYPE PROTEIN A-1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: HOMEODOMAIN, C-TERMINAL DOMAIN (66-126); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PCW/AL66-126 KEYWDS HOMEODOMAIN, HELIX-TURN-HELIX, TRANSCRIPTION EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.S.ANDERSON,M.FORMAN,S.MODLESKI,F.W.DAHLQUIST,S.M.BAXTER REVDAT 5 16-FEB-22 1F43 1 REMARK REVDAT 4 24-FEB-09 1F43 1 VERSN REVDAT 3 01-APR-03 1F43 1 JRNL REVDAT 2 27-SEP-00 1F43 1 JRNL REVDAT 1 26-JUL-00 1F43 0 JRNL AUTH J.S.ANDERSON,M.D.FORMAN,S.MODLESKI,F.W.DAHLQUIST,S.M.BAXTER JRNL TITL COOPERATIVE ORDERING IN HOMEODOMAIN-DNA RECOGNITION: JRNL TITL 2 SOLUTION STRUCTURE AND DYNAMICS OF THE MATA1 HOMEODOMAIN. JRNL REF BIOCHEMISTRY V. 39 10045 2000 JRNL REFN ISSN 0006-2960 JRNL PMID 10955992 JRNL DOI 10.1021/BI000677Z REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2.3, X-PLOR 3.851 REMARK 3 AUTHORS : BRUKER INSTRUMENTS (XWINNMR), A. BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURE IS BASED ON A TOTAL OF 1178 NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, REMARK 3 38 DIHEDRAL ANGLE CONSTRAINTS, AND 42 HYDROGEN BOND RESTRAINTS. REMARK 4 REMARK 4 1F43 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011217. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298; 298; 298 REMARK 210 PH : 4.5; 4.5; 4.5 REMARK 210 IONIC STRENGTH : 100 MM KCL; 100 MM KCL; 100 MM REMARK 210 KCL REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5 MM MATA1(66-126) U-15N,13C REMARK 210 25 MM DEUTERATED ACETATE, PH 4.5, REMARK 210 100 MM KCL, 0.01% NAN3; 90% H2O, REMARK 210 10% D2O; 1.5 MM MATA1 (66-126) REMARK 210 U-15N 25 MM DEUTERATED ACETATE, REMARK 210 PH 4.5, 100 MM KCL, 0.01% NAN3; REMARK 210 90% H2O, 10% D2O; 1.5 MM MATA1 REMARK 210 (66-126) 25 MM DEUTERATED REMARK 210 ACETATE, PH 4.5, 100 MM KCL, REMARK 210 0.01% NAN3; 90% H2O, 10% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_15N-SEPARATED_NOESY; HNHA; REMARK 210 HNCA-J; 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : FELIX 970 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : TARGET FUNCTION REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 17 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ASN A 27 H LYS A 31 1.52 REMARK 500 O GLN A 11 H PHE A 15 1.54 REMARK 500 O GLN A 44 H TRP A 48 1.55 REMARK 500 O GLU A 30 H VAL A 34 1.55 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LYS A -2 104.70 61.29 REMARK 500 1 GLU A -1 -74.06 -97.48 REMARK 500 1 LYS A 0 103.52 -165.47 REMARK 500 1 SER A 1 90.67 -162.49 REMARK 500 1 SER A 6 -78.59 64.71 REMARK 500 1 SER A 9 -177.49 -54.31 REMARK 500 1 LYS A 23 -147.57 -170.16 REMARK 500 1 GLN A 24 -51.96 -140.41 REMARK 500 1 ILE A 40 -163.91 -109.97 REMARK 500 1 VAL A 45 -32.61 -36.67 REMARK 500 1 ARG A 53 33.20 -179.84 REMARK 500 1 MET A 54 88.33 -52.92 REMARK 500 2 SER A 1 -61.99 -175.78 REMARK 500 2 SER A 6 -80.92 -67.71 REMARK 500 2 SER A 7 -167.04 47.42 REMARK 500 2 SER A 9 -176.68 -55.15 REMARK 500 2 LYS A 23 -145.79 -169.95 REMARK 500 2 GLN A 24 -50.04 -144.59 REMARK 500 2 ILE A 40 -164.04 -112.55 REMARK 500 2 VAL A 45 -32.82 -36.32 REMARK 500 2 ARG A 53 31.27 -177.50 REMARK 500 2 MET A 54 86.25 -53.54 REMARK 500 3 SER A 1 161.67 58.97 REMARK 500 3 PRO A 2 84.16 -57.96 REMARK 500 3 LYS A 3 146.88 -170.19 REMARK 500 3 LYS A 5 -58.13 -141.46 REMARK 500 3 SER A 7 -69.15 -123.62 REMARK 500 3 SER A 9 -175.45 -54.97 REMARK 500 3 LYS A 23 -147.87 -163.33 REMARK 500 3 GLN A 24 -49.43 -139.05 REMARK 500 3 ILE A 40 -162.59 -109.78 REMARK 500 3 VAL A 45 -33.25 -36.27 REMARK 500 3 ARG A 53 32.35 -170.57 REMARK 500 3 MET A 54 84.15 -53.51 REMARK 500 3 SER A 56 -169.34 -125.80 REMARK 500 4 LYS A -2 36.25 -98.60 REMARK 500 4 GLU A -1 -169.15 -169.78 REMARK 500 4 LYS A 0 99.49 61.84 REMARK 500 4 LYS A 3 126.42 63.35 REMARK 500 4 SER A 9 -176.90 -53.64 REMARK 500 4 LYS A 23 -138.93 -163.19 REMARK 500 4 GLN A 24 -46.50 -147.90 REMARK 500 4 ILE A 40 -163.26 -107.05 REMARK 500 4 VAL A 45 -33.89 -36.25 REMARK 500 4 ARG A 53 36.37 -178.14 REMARK 500 4 MET A 54 69.10 -61.87 REMARK 500 5 LYS A -2 -78.97 63.50 REMARK 500 5 LYS A 0 59.82 -108.95 REMARK 500 5 SER A 7 161.83 61.83 REMARK 500 5 SER A 9 -176.74 -54.21 REMARK 500 REMARK 500 THIS ENTRY HAS 210 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1YRN RELATED DB: PDB REMARK 900 1YRN CONTAINS THE SAME PROTEIN COMPLEXED WITH MATALPHA2 HOMEODOMAIN REMARK 900 AND DNA DBREF 1F43 A -3 57 UNP P01366 MATA1_YEAST 66 126 SEQRES 1 A 61 LYS LYS GLU LYS SER PRO LYS GLY LYS SER SER ILE SER SEQRES 2 A 61 PRO GLN ALA ARG ALA PHE LEU GLU GLN VAL PHE ARG ARG SEQRES 3 A 61 LYS GLN SER LEU ASN SER LYS GLU LYS GLU GLU VAL ALA SEQRES 4 A 61 LYS LYS CYS GLY ILE THR PRO LEU GLN VAL ARG VAL TRP SEQRES 5 A 61 PHE ILE ASN LYS ARG MET ARG SER LYS HELIX 1 1 PRO A 10 LYS A 23 1 14 HELIX 2 2 ASN A 27 GLY A 39 1 13 HELIX 3 3 LEU A 43 LYS A 52 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1