HEADER SIGNALING PROTEIN 10-JUN-00 1F4V TITLE CRYSTAL STRUCTURE OF ACTIVATED CHEY BOUND TO THE N-TERMINUS OF FLIM COMPND MOL_ID: 1; COMPND 2 MOLECULE: CHEMOTAXIS CHEY PROTEIN; COMPND 3 CHAIN: A, B, C; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: FLAGELLAR MOTOR SWITCH PROTEIN; COMPND 7 CHAIN: D, E, F; COMPND 8 FRAGMENT: N-TERMINUS; COMPND 9 SYNONYM: FLIM SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PET21; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 10 ORGANISM_TAXID: 562 KEYWDS RESPONSE REGULATOR, PEPTIDE-PROTEIN COMPLEX, BACTERIAL SIGNAL KEYWDS 2 TRANSDUCTION, BEF3, SIGNALING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR S.Y.LEE,H.S.CHO,J.G.PELTON,D.YAN,R.K.HENDERSON,D.KING,L.S.HUANG, AUTHOR 2 S.KUSTU,E.A.BERRY,D.E.WEMMER REVDAT 7 07-FEB-24 1F4V 1 REMARK LINK REVDAT 6 18-APR-18 1F4V 1 REMARK REVDAT 5 13-JUL-11 1F4V 1 VERSN REVDAT 4 24-FEB-09 1F4V 1 VERSN REVDAT 3 01-APR-03 1F4V 1 JRNL REVDAT 2 24-OCT-01 1F4V 1 CRYST1 REMARK REVDAT 1 17-JAN-01 1F4V 0 JRNL AUTH S.Y.LEE,H.S.CHO,J.G.PELTON,D.YAN,R.K.HENDERSON,D.S.KING, JRNL AUTH 2 L.HUANG,S.KUSTU,E.A.BERRY,D.E.WEMMER JRNL TITL CRYSTAL STRUCTURE OF AN ACTIVATED RESPONSE REGULATOR BOUND JRNL TITL 2 TO ITS TARGET. JRNL REF NAT.STRUCT.BIOL. V. 8 52 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11135671 JRNL DOI 10.1038/83053 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.S.CHO,S.Y.LEE,D.YAN,X.PAN,J.S.PARKINSON,S.KUSTU, REMARK 1 AUTH 2 D.E.WEMMER,J.G.PELTON REMARK 1 TITL NMR STRUCTURE OF ACTIVATED CHEY REMARK 1 REF J.MOL.BIOL. V. 297 543 2000 REMARK 1 REFN ISSN 0022-2836 REMARK 1 DOI 10.1006/JMBI.2000.3595 REMARK 1 REFERENCE 2 REMARK 1 AUTH D.YAN,H.S.CHO,C.A.HASTINGS,M.M.IGO,S.Y.LEE,J.G.PELTON, REMARK 1 AUTH 2 V.STEWART,D.E.WEMMER,S.KUSTU REMARK 1 TITL BERYLLOFLUORIDE MIMICS PHOSPHORYLATION OF NTRC AND OTHER REMARK 1 TITL 2 BACTERIAL RESPONSE REGULATORS REMARK 1 REF PROC.NATL.ACAD.SCI.USA V. 96 14789 1999 REMARK 1 REFN ISSN 0027-8424 REMARK 1 DOI 10.1073/PNAS.96.26.14789 REMARK 1 REFERENCE 3 REMARK 1 AUTH K.VOLZ,P.MATSUMURA REMARK 1 TITL CRYSTAL STRUCTURE OF ESCHERICHIA COLI CHEY REFINED AT 1.7-A REMARK 1 TITL 2 RESOLUTION REMARK 1 REF J.BIOL.CHEM. V. 266 15511 1991 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.1 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1216673.620 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 93.0 REMARK 3 NUMBER OF REFLECTIONS : 28623 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.217 REMARK 3 FREE R VALUE : 0.258 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1442 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.007 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.22 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.36 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 84.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4087 REMARK 3 BIN R VALUE (WORKING SET) : 0.3160 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.30 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 231 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.025 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3246 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 27 REMARK 3 SOLVENT ATOMS : 280 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 32.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 55.10 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.24000 REMARK 3 B22 (A**2) : -0.04000 REMARK 3 B33 (A**2) : 0.28000 REMARK 3 B12 (A**2) : 1.96000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.29 REMARK 3 ESD FROM SIGMAA (A) : 0.27 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.37 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.35 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.840 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 3.330 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.710 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 5.270 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 7.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : NULL REMARK 3 BSOL : NULL REMARK 3 REMARK 3 NCS MODEL : CONSTR REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : GOL_PAR REMARK 3 PARAMETER FILE 3 : SO4_PAR REMARK 3 PARAMETER FILE 4 : PARAM19.RCV REMARK 3 PARAMETER FILE 5 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F4V COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011245. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-OCT-99; 06-JAN-00; NULL; NULL REMARK 200 TEMPERATURE (KELVIN) : 100; 100; 100; 100 REMARK 200 PH : 8.4 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y; Y; Y REMARK 200 RADIATION SOURCE : ALS; SSRL; SSRL; SSRL REMARK 200 BEAMLINE : 5.0.2; BL1-5; BL1-5; BL1-5 REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL; NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL; NULL; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 1.2; 0.9799; 0.9796; 0.9253 REMARK 200 MONOCHROMATOR : NULL; NULL; NULL; NULL REMARK 200 OPTICS : NULL; NULL; NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE; IMAGE PLATE; NULL; REMARK 200 NULL REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4; FUJI; NULL; NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28982 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 24.700 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.9 REMARK 200 DATA REDUNDANCY : 4.200 REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 24.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.24 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.7 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.31800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH; NULL; NULL; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.79 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.14 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: AMMONIUM SULFATE, GLYCEROL, TRIS, PH REMARK 280 8.4, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500009 -0.866009 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866041 -0.499991 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 231.62200 REMARK 290 SMTRY1 3 -0.499991 0.866009 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866041 -0.500009 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 115.81100 REMARK 290 SMTRY1 4 -0.500009 0.865999 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866041 0.500009 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 115.81100 REMARK 290 SMTRY1 6 -0.499991 -0.866020 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866041 0.499991 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 231.62200 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 7470 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -13.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1340 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6970 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1490 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 6920 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -11.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY C 128 REMARK 465 MET C 129 REMARK 465 MET E 1 REMARK 465 GLY E 2 REMARK 465 MET F 1 REMARK 465 GLY F 2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 311 O HOH A 418 1.92 REMARK 500 O HOH A 318 O HOH A 436 2.01 REMARK 500 O ASP C 57 O HOH C 304 2.02 REMARK 500 O ASP A 57 O HOH A 312 2.06 REMARK 500 O HOH A 309 O HOH A 437 2.08 REMARK 500 O HOH A 368 O HOH A 385 2.13 REMARK 500 O HOH A 378 O HOH D 21 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 387 O HOH D 28 6765 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 58 -64.90 -103.88 REMARK 500 ASN A 62 -48.44 68.72 REMARK 500 MET A 63 117.80 -167.27 REMARK 500 ALA A 90 13.29 -140.13 REMARK 500 TRP B 58 -70.22 -104.87 REMARK 500 ASN B 62 -30.06 68.23 REMARK 500 MET B 63 112.99 -173.04 REMARK 500 SER B 79 -37.07 -27.46 REMARK 500 ASP C 3 113.74 -36.36 REMARK 500 LYS C 4 -10.84 88.98 REMARK 500 LEU C 9 71.96 -156.39 REMARK 500 GLU C 34 -159.75 -92.08 REMARK 500 ALA C 36 142.09 -175.83 REMARK 500 TRP C 58 -70.22 -101.65 REMARK 500 ASN C 59 97.45 -68.07 REMARK 500 ASN C 62 -29.99 71.69 REMARK 500 MET C 63 113.17 -175.92 REMARK 500 PRO C 82 107.84 -56.78 REMARK 500 LYS C 126 -1.53 -58.12 REMARK 500 SER E 4 -169.19 -108.04 REMARK 500 SER F 4 81.01 62.88 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 13 OD2 REMARK 620 2 ASP A 13 OD1 45.1 REMARK 620 3 ASP A 57 OD2 123.4 83.5 REMARK 620 4 ASN A 59 O 78.1 88.2 78.6 REMARK 620 5 BEF A 130 F1 155.3 153.3 69.8 85.3 REMARK 620 6 HOH A 416 O 114.5 88.5 78.4 157.0 87.6 REMARK 620 7 HOH A 428 O 69.5 112.6 162.1 93.6 93.7 108.7 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF A 130 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 57 OD1 REMARK 620 2 BEF A 130 F1 112.5 REMARK 620 3 BEF A 130 F2 107.2 109.0 REMARK 620 4 BEF A 130 F3 110.4 108.2 109.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 13 OD1 REMARK 620 2 ASP B 57 OD2 82.0 REMARK 620 3 ASN B 59 O 79.9 69.4 REMARK 620 4 BEF B 130 F1 149.5 72.9 75.4 REMARK 620 5 HOH B 324 O 99.8 94.3 163.6 98.9 REMARK 620 6 HOH B 331 O 100.3 148.5 80.0 92.7 115.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF B 130 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 57 OD1 REMARK 620 2 BEF B 130 F1 113.9 REMARK 620 3 BEF B 130 F2 107.4 107.3 REMARK 620 4 BEF B 130 F3 109.5 108.4 110.3 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG C 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 13 OD2 REMARK 620 2 ASP C 13 OD1 49.7 REMARK 620 3 ASN C 59 O 83.0 61.1 REMARK 620 4 BEF C 130 F1 151.6 104.1 72.7 REMARK 620 5 HOH C 310 O 105.5 76.3 114.7 72.8 REMARK 620 6 HOH C 333 O 128.8 170.5 110.0 74.8 111.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 BEF C 130 BE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 57 OD1 REMARK 620 2 BEF C 130 F1 111.3 REMARK 620 3 BEF C 130 F2 108.4 109.0 REMARK 620 4 BEF C 130 F3 109.5 108.9 109.7 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF A 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF B 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BEF C 130 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1DJM RELATED DB: PDB REMARK 900 BEF3-ACTIVATED CHEY REMARK 900 RELATED ID: 3CHY RELATED DB: PDB REMARK 900 RELATED ID: 1FQW RELATED DB: PDB DBREF 1F4V A 2 129 UNP P06143 CHEY_ECOLI 1 128 DBREF 1F4V B 2 129 UNP P06143 CHEY_ECOLI 1 128 DBREF 1F4V C 2 129 UNP P06143 CHEY_ECOLI 1 128 DBREF 1F4V D 1 16 UNP P06974 FLIM_ECOLI 1 16 DBREF 1F4V E 1 16 UNP P06974 FLIM_ECOLI 1 16 DBREF 1F4V F 1 16 UNP P06974 FLIM_ECOLI 1 16 SEQRES 1 A 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP ASP PHE SEQRES 2 A 128 SER THR MET ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 A 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 A 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 A 128 VAL ILE SER ASP TRP ASN MET PRO ASN MET ASP GLY LEU SEQRES 6 A 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MET SER SEQRES 7 A 128 ALA LEU PRO VAL LEU MET VAL THR ALA GLU ALA LYS LYS SEQRES 8 A 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 A 128 TYR VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 A 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MET SEQRES 1 B 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP ASP PHE SEQRES 2 B 128 SER THR MET ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 B 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 B 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 B 128 VAL ILE SER ASP TRP ASN MET PRO ASN MET ASP GLY LEU SEQRES 6 B 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MET SER SEQRES 7 B 128 ALA LEU PRO VAL LEU MET VAL THR ALA GLU ALA LYS LYS SEQRES 8 B 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 B 128 TYR VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 B 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MET SEQRES 1 C 128 ALA ASP LYS GLU LEU LYS PHE LEU VAL VAL ASP ASP PHE SEQRES 2 C 128 SER THR MET ARG ARG ILE VAL ARG ASN LEU LEU LYS GLU SEQRES 3 C 128 LEU GLY PHE ASN ASN VAL GLU GLU ALA GLU ASP GLY VAL SEQRES 4 C 128 ASP ALA LEU ASN LYS LEU GLN ALA GLY GLY TYR GLY PHE SEQRES 5 C 128 VAL ILE SER ASP TRP ASN MET PRO ASN MET ASP GLY LEU SEQRES 6 C 128 GLU LEU LEU LYS THR ILE ARG ALA ASP GLY ALA MET SER SEQRES 7 C 128 ALA LEU PRO VAL LEU MET VAL THR ALA GLU ALA LYS LYS SEQRES 8 C 128 GLU ASN ILE ILE ALA ALA ALA GLN ALA GLY ALA SER GLY SEQRES 9 C 128 TYR VAL VAL LYS PRO PHE THR ALA ALA THR LEU GLU GLU SEQRES 10 C 128 LYS LEU ASN LYS ILE PHE GLU LYS LEU GLY MET SEQRES 1 D 16 MET GLY ASP SER ILE LEU SER GLN ALA GLU ILE ASP ALA SEQRES 2 D 16 LEU LEU ASN SEQRES 1 E 16 MET GLY ASP SER ILE LEU SER GLN ALA GLU ILE ASP ALA SEQRES 2 E 16 LEU LEU ASN SEQRES 1 F 16 MET GLY ASP SER ILE LEU SER GLN ALA GLU ILE ASP ALA SEQRES 2 F 16 LEU LEU ASN HET MG A 301 1 HET BEF A 130 4 HET GOL A 304 6 HET MG B 302 1 HET BEF B 130 4 HET GOL B 305 6 HET MG C 303 1 HET BEF C 130 4 HETNAM MG MAGNESIUM ION HETNAM BEF BERYLLIUM TRIFLUORIDE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 7 MG 3(MG 2+) FORMUL 8 BEF 3(BE F3 1-) FORMUL 9 GOL 2(C3 H8 O3) FORMUL 15 HOH *280(H2 O) HELIX 1 1 PHE A 14 GLY A 29 1 16 HELIX 2 2 ASP A 38 ALA A 48 1 11 HELIX 3 3 ASP A 64 ASP A 75 1 12 HELIX 4 4 LYS A 91 ALA A 101 1 11 HELIX 5 5 THR A 112 MET A 129 1 18 HELIX 6 6 PHE B 14 GLY B 29 1 16 HELIX 7 7 ASP B 38 ALA B 48 1 11 HELIX 8 8 ASP B 64 ALA B 74 1 11 HELIX 9 9 LYS B 91 GLY B 102 1 12 HELIX 10 10 THR B 112 LEU B 127 1 16 HELIX 11 11 PHE C 14 GLY C 29 1 16 HELIX 12 12 ASP C 38 GLY C 49 1 12 HELIX 13 13 ASP C 64 ASP C 75 1 12 HELIX 14 14 LYS C 91 ALA C 101 1 11 HELIX 15 15 THR C 112 LYS C 126 1 15 HELIX 16 16 SER D 7 ASN D 16 1 10 HELIX 17 17 SER E 7 ASN E 16 1 10 HELIX 18 18 SER F 7 ASN F 16 1 10 SHEET 1 A 5 VAL A 33 ALA A 36 0 SHEET 2 A 5 PHE A 8 VAL A 11 1 O PHE A 8 N GLU A 34 SHEET 3 A 5 PHE A 53 SER A 56 1 O PHE A 53 N LEU A 9 SHEET 4 A 5 VAL A 83 THR A 87 1 N LEU A 84 O VAL A 54 SHEET 5 A 5 GLY A 105 VAL A 108 1 O GLY A 105 N MET A 85 SHEET 1 B 5 VAL B 33 ALA B 36 0 SHEET 2 B 5 PHE B 8 VAL B 11 1 O PHE B 8 N GLU B 34 SHEET 3 B 5 PHE B 53 SER B 56 1 O PHE B 53 N LEU B 9 SHEET 4 B 5 VAL B 83 THR B 87 1 N LEU B 84 O VAL B 54 SHEET 5 B 5 GLY B 105 VAL B 108 1 O GLY B 105 N MET B 85 SHEET 1 C 2 PHE C 8 LEU C 9 0 SHEET 2 C 2 VAL C 33 GLU C 34 1 N GLU C 34 O PHE C 8 SHEET 1 D 3 VAL C 54 SER C 56 0 SHEET 2 D 3 VAL C 83 THR C 87 1 N LEU C 84 O VAL C 54 SHEET 3 D 3 GLY C 105 VAL C 108 1 O GLY C 105 N MET C 85 LINK OD2 ASP A 13 MG MG B 302 1555 1555 3.11 LINK OD1 ASP A 13 MG MG B 302 1555 1555 2.16 LINK OD1 ASP A 57 BE BEF A 130 1555 1555 1.54 LINK OD2 ASP A 57 MG MG B 302 1555 1555 2.17 LINK O ASN A 59 MG MG B 302 1555 1555 2.28 LINK F1 BEF A 130 MG MG B 302 1555 1555 2.27 LINK MG MG A 301 OD1 ASP B 13 1555 1555 2.10 LINK MG MG A 301 OD2 ASP B 57 1555 1555 2.20 LINK MG MG A 301 O ASN B 59 1555 1555 2.47 LINK MG MG A 301 F1 BEF B 130 1555 1555 2.29 LINK MG MG A 301 O HOH B 324 1555 1555 2.17 LINK MG MG A 301 O HOH B 331 1555 1555 2.18 LINK O HOH A 416 MG MG B 302 1555 1555 2.30 LINK O HOH A 428 MG MG B 302 1555 1555 2.21 LINK OD1 ASP B 57 BE BEF B 130 1555 1555 1.55 LINK OD2 ASP C 13 MG MG C 303 1555 1555 2.72 LINK OD1 ASP C 13 MG MG C 303 1555 1555 2.52 LINK OD1 ASP C 57 BE BEF C 130 1555 1555 1.51 LINK O ASN C 59 MG MG C 303 1555 1555 2.78 LINK F1 BEF C 130 MG MG C 303 1555 1555 2.54 LINK MG MG C 303 O HOH C 310 1555 1555 3.00 LINK MG MG C 303 O HOH C 333 1555 1555 2.52 CISPEP 1 LYS A 109 PRO A 110 0 -0.61 CISPEP 2 LYS B 109 PRO B 110 0 0.11 CISPEP 3 LYS C 109 PRO C 110 0 -1.02 SITE 1 AC1 7 ASP B 12 ASP B 13 ASP B 57 ASN B 59 SITE 2 AC1 7 BEF B 130 HOH B 324 HOH B 331 SITE 1 AC2 6 ASP A 13 ASP A 57 ASN A 59 BEF A 130 SITE 2 AC2 6 HOH A 416 HOH A 428 SITE 1 AC3 7 ASP C 13 PHE C 14 ASP C 57 ASN C 59 SITE 2 AC3 7 BEF C 130 HOH C 310 HOH C 333 SITE 1 AC4 8 ASP A 57 TRP A 58 ASN A 59 THR A 87 SITE 2 AC4 8 ALA A 88 LYS A 109 HOH A 383 MG B 302 SITE 1 AC5 10 LYS A 92 MET A 129 MG A 301 ASP B 57 SITE 2 AC5 10 TRP B 58 ASN B 59 THR B 87 ALA B 88 SITE 3 AC5 10 LYS B 109 HOH B 313 SITE 1 AC6 8 ASP C 57 TRP C 58 ASN C 59 THR C 87 SITE 2 AC6 8 ALA C 88 LYS C 109 MG C 303 HOH C 333 SITE 1 AC7 4 ARG A 19 LYS A 70 HOH A 391 HOH A 406 SITE 1 AC8 6 SER A 79 HOH A 340 ARG B 19 ARG B 22 SITE 2 AC8 6 HOH B 325 HOH B 389 CRYST1 54.232 54.233 347.433 90.00 90.00 120.00 P 32 2 1 18 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018439 0.010633 -0.000003 0.00000 SCALE2 0.000000 0.021285 -0.000003 0.00000 SCALE3 0.000000 0.000000 0.002878 0.00000