HEADER RNA 16-JUN-00 1F5U TITLE SOLUTION STRUCTURE OF THE KISSING DIMER OF H3 GACG STEM-LOOP IN THE TITLE 2 5'-END DIMERIZATION SIGNAL OF MOLONEY MURINE LEUKEMIA VIRUS GENOMIC TITLE 3 RNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: RNA (5'- COMPND 3 R(*GP*GP*UP*GP*GP*GP*AP*GP*AP*CP*GP*UP*CP*CP*CP*AP*CP*C)-3'); COMPND 4 CHAIN: A, B; COMPND 5 FRAGMENT: 18 MER RNA SEQUENCE MIMICKING H3 GACG STEM-LOOP; COMPND 6 ENGINEERED: YES; COMPND 7 OTHER_DETAILS: H3 GACG STEM-LOOP IN THE 5'-END DIMERIZATION SIGNAL COMPND 8 SEQUENCE OF MOLONEY MURINE LEUKEMIA VIRUS GENOMIC RNA SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN MOLONEY MURINE SOURCE 4 LEUKEMIA VIRUS KEYWDS RETROVIRUS, MOLONEY MURINE LEUKEMIA VIRUS, DIMERIZATION, TETRALOOP, KEYWDS 2 STEM-LOOP, KISSING DIMER, RNA EXPDTA SOLUTION NMR AUTHOR C.-H.KIM,I.TINOCO JR. REVDAT 5 16-FEB-22 1F5U 1 REMARK REVDAT 4 24-FEB-09 1F5U 1 VERSN REVDAT 3 01-APR-03 1F5U 1 JRNL REVDAT 2 04-SEP-00 1F5U 1 REMARK REVDAT 1 21-AUG-00 1F5U 0 JRNL AUTH C.H.KIM,I.TINOCO JR. JRNL TITL A RETROVIRAL RNA KISSING COMPLEX CONTAINING ONLY TWO G.C JRNL TITL 2 BASE PAIRS. JRNL REF PROC.NATL.ACAD.SCI.USA V. 97 9396 2000 JRNL REFN ISSN 0027-8424 JRNL PMID 10931958 JRNL DOI 10.1073/PNAS.170283697 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : UXNMR 910901, X-PLOR 3.1 REMARK 3 AUTHORS : BRUKER (UXNMR), AXEL BRUNGER (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE IS BASED ON A TOTAL OF REMARK 3 852 RESTRAINTS, 528 NOE-DERIVED DISTANCE CONSTRAINTS, 324 REMARK 3 DIHEDRAL CONSTRAINTS REMARK 4 REMARK 4 1F5U COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 19-JUN-00. REMARK 100 THE DEPOSITION ID IS D_1000011279. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293; 283 REMARK 210 PH : 6.5; 6.5 REMARK 210 IONIC STRENGTH : 100 MM NACL; 100MM NACL REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 2 MM RNA SAMPLE, 10MM SODIUM REMARK 210 PHOSPHATE BUFFER PH 6.5, 100MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA; 2 REMARK 210 MM RNA SAMPLE, 10MM SODIUM REMARK 210 PHOSPHATE BUFFER PH 6.5, 100MM REMARK 210 SODIUM CHLORIDE, 0.1 MM EDTA REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AMX; DRX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR, FELIX 95.0, X-PLOR 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 19 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 1 REMARK 210 CONFORMERS, SELECTION CRITERIA : AVERAGED AND ENERGY-MINIMIZED REMARK 210 STRUCTURE BASED ON 19 CONVERGED REMARK 210 STRUCTURES REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 DBREF 1F5U A 1 18 PDB 1F5U 1F5U 1 18 DBREF 1F5U B 1 18 PDB 1F5U 1F5U 1 18 SEQRES 1 A 18 G G U G G G A G A C G U C SEQRES 2 A 18 C C A C C SEQRES 1 B 18 G G U G G G A G A C G U C SEQRES 2 B 18 C C A C C CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000