HEADER DNA BINDING PROTEIN 23-JUN-00 1F6V TITLE SOLUTION STRUCTURE OF THE C TERMINAL OF MU B TRANSPOSITION PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA TRANSPOSITION PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL DOMAIN; COMPND 5 SYNONYM: MU B TRANSPOSITION PROTEIN; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROBACTERIA PHAGE MU; SOURCE 3 ORGANISM_TAXID: 10677; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PHH05; SOURCE 8 OTHER_DETAILS: T7 PHAGE KEYWDS MU PHAGE, RECOMBINATION, TRANSPOSITION, ATPASE, DNA BINDING, HIGH KEYWDS 2 SALT, SOLUTION STRUCTURE, DNA BINDING PROTEIN EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR L.-H.HUNG,G.CHACONAS,G.S.SHAW REVDAT 4 01-FEB-17 1F6V 1 AUTHOR VERSN REVDAT 3 24-FEB-09 1F6V 1 VERSN REVDAT 2 01-APR-03 1F6V 1 JRNL REVDAT 1 08-NOV-00 1F6V 0 JRNL AUTH L.H.HUNG,G.CHACONAS,G.S.SHAW JRNL TITL THE SOLUTION STRUCTURE OF THE C-TERMINAL DOMAIN OF THE MU B JRNL TITL 2 TRANSPOSITION PROTEIN. JRNL REF EMBO J. V. 19 5625 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 11060014 JRNL DOI 10.1093/EMBOJ/19.21.5625 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 THE STRUCTURES ARE BASED ON A TOTAL OF 1047 NOE DERIVED, AND 55 REMARK 3 DIHEDRAL CONSTRAINTS. REMARK 3 THERE ARE NO LONG-RANGE NOES OBSERVED FOR THE FIRST 8 RESIDUES REMARK 3 WHICH ARE DISORDERED. REMARK 4 REMARK 4 1F6V COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-JUN-00. REMARK 100 THE RCSB ID CODE IS RCSB011316. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 298 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 1.5 M NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 0.75 MM MU B U-15N,13C; 20 MM REMARK 210 PHOSPHATE BUFFER; 0.75 MM MU B U- REMARK 210 15N; 20 MM PHOSPHATE BUFFER; 0.75 REMARK 210 MM MU B NA; 20 MM PHOSPHATE REMARK 210 BUFFER; MU B U-15N-(COMBINATIONS REMARK 210 OF LEU, ILE, GLY, SER, GLU, ARG, REMARK 210 ALA),20 MM PHOSPHATE BUFFER REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY; HNHA; 3D_15N- REMARK 210 SEPARATED TOCSY; 2D NOESY; 2D REMARK 210 TOCSY; 15N-HSQC REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITY REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE, VNMR REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH LOWEST ENERGY REMARK 210 AND NO RESTRAINT VIOLATIONS WITH REMARK 210 PHI PSI ANGLES IN ALLOWED REGIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: HIGH IONIC CONDITIONS PRECLUDED MANY OF THE STANDARD REMARK 210 TRIPLE RESONANCE EXPERIMENTS. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 ASN A 91 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ALA A 9 -171.21 -55.04 REMARK 500 1 LYS A 12 15.18 53.14 REMARK 500 1 THR A 13 -168.16 43.10 REMARK 500 1 TRP A 25 -143.61 -99.39 REMARK 500 1 GLN A 26 81.61 -65.99 REMARK 500 1 ASN A 28 -49.60 -152.86 REMARK 500 1 GLN A 38 20.95 -146.01 REMARK 500 1 PRO A 43 -79.86 -73.22 REMARK 500 1 ALA A 45 -0.71 -152.55 REMARK 500 1 LEU A 46 -82.07 -46.40 REMARK 500 1 ARG A 47 -75.73 8.97 REMARK 500 1 ALA A 56 -35.75 -32.01 REMARK 500 1 MET A 58 94.16 -67.33 REMARK 500 1 HIS A 61 90.02 -32.75 REMARK 500 1 LYS A 63 -41.26 175.23 REMARK 500 1 ARG A 66 -153.12 -76.42 REMARK 500 1 VAL A 67 70.97 -151.71 REMARK 500 1 ASN A 68 -166.32 163.44 REMARK 500 1 TYR A 71 -51.90 -29.25 REMARK 500 1 ARG A 77 -43.37 -150.27 REMARK 500 1 LEU A 79 -73.02 -94.16 REMARK 500 1 ASP A 80 -44.02 169.09 REMARK 500 1 LEU A 81 59.73 83.08 REMARK 500 1 ASP A 82 -30.48 -168.45 REMARK 500 1 VAL A 83 -40.87 -155.51 REMARK 500 1 SER A 86 -147.39 -69.43 REMARK 500 1 LEU A 89 -67.39 -144.89 REMARK 500 1 ARG A 90 -169.41 -53.64 REMARK 500 2 SER A 2 -88.32 -101.55 REMARK 500 2 ARG A 3 61.87 -101.58 REMARK 500 2 THR A 8 -88.37 -78.39 REMARK 500 2 ILE A 10 79.84 -108.24 REMARK 500 2 LYS A 12 94.70 -38.88 REMARK 500 2 THR A 13 162.87 -48.73 REMARK 500 2 TRP A 25 -148.82 65.80 REMARK 500 2 ASN A 28 -43.33 -161.92 REMARK 500 2 GLN A 38 22.31 -145.13 REMARK 500 2 PRO A 43 -84.81 -73.73 REMARK 500 2 ALA A 45 -7.35 -147.65 REMARK 500 2 LEU A 46 -77.72 -45.91 REMARK 500 2 ARG A 47 -73.52 4.99 REMARK 500 2 ALA A 56 -37.18 -30.56 REMARK 500 2 MET A 58 97.08 -63.70 REMARK 500 2 ARG A 66 -102.82 -106.04 REMARK 500 2 VAL A 67 130.84 177.92 REMARK 500 2 ASN A 68 -150.06 76.63 REMARK 500 2 TYR A 71 -48.14 -29.42 REMARK 500 2 ARG A 77 -34.12 -153.28 REMARK 500 2 LEU A 79 -70.77 -103.76 REMARK 500 2 ASP A 80 -46.77 171.84 REMARK 500 REMARK 500 THIS ENTRY HAS 536 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 3 0.29 SIDE CHAIN REMARK 500 1 ARG A 7 0.26 SIDE CHAIN REMARK 500 1 ARG A 47 0.16 SIDE CHAIN REMARK 500 1 ARG A 54 0.25 SIDE CHAIN REMARK 500 1 ARG A 66 0.09 SIDE CHAIN REMARK 500 1 ARG A 73 0.24 SIDE CHAIN REMARK 500 1 ARG A 77 0.28 SIDE CHAIN REMARK 500 1 ARG A 90 0.27 SIDE CHAIN REMARK 500 2 ARG A 3 0.27 SIDE CHAIN REMARK 500 2 ARG A 7 0.32 SIDE CHAIN REMARK 500 2 ARG A 47 0.32 SIDE CHAIN REMARK 500 2 ARG A 54 0.32 SIDE CHAIN REMARK 500 2 ARG A 66 0.31 SIDE CHAIN REMARK 500 2 ARG A 73 0.29 SIDE CHAIN REMARK 500 2 ARG A 77 0.08 SIDE CHAIN REMARK 500 2 ARG A 90 0.27 SIDE CHAIN REMARK 500 3 ARG A 3 0.24 SIDE CHAIN REMARK 500 3 ARG A 7 0.30 SIDE CHAIN REMARK 500 3 ARG A 47 0.31 SIDE CHAIN REMARK 500 3 ARG A 54 0.19 SIDE CHAIN REMARK 500 3 ARG A 73 0.29 SIDE CHAIN REMARK 500 3 ARG A 77 0.17 SIDE CHAIN REMARK 500 3 ARG A 90 0.29 SIDE CHAIN REMARK 500 4 ARG A 3 0.30 SIDE CHAIN REMARK 500 4 ARG A 7 0.31 SIDE CHAIN REMARK 500 4 ARG A 47 0.28 SIDE CHAIN REMARK 500 4 ARG A 54 0.24 SIDE CHAIN REMARK 500 4 ARG A 66 0.27 SIDE CHAIN REMARK 500 4 ARG A 73 0.25 SIDE CHAIN REMARK 500 4 ARG A 77 0.28 SIDE CHAIN REMARK 500 4 ARG A 90 0.20 SIDE CHAIN REMARK 500 5 ARG A 3 0.17 SIDE CHAIN REMARK 500 5 ARG A 7 0.18 SIDE CHAIN REMARK 500 5 ARG A 47 0.31 SIDE CHAIN REMARK 500 5 ARG A 54 0.31 SIDE CHAIN REMARK 500 5 ARG A 73 0.26 SIDE CHAIN REMARK 500 5 ARG A 77 0.31 SIDE CHAIN REMARK 500 5 ARG A 90 0.25 SIDE CHAIN REMARK 500 6 ARG A 3 0.27 SIDE CHAIN REMARK 500 6 ARG A 7 0.29 SIDE CHAIN REMARK 500 6 ARG A 47 0.30 SIDE CHAIN REMARK 500 6 ARG A 54 0.21 SIDE CHAIN REMARK 500 6 ARG A 66 0.19 SIDE CHAIN REMARK 500 6 ARG A 73 0.27 SIDE CHAIN REMARK 500 6 ARG A 77 0.29 SIDE CHAIN REMARK 500 6 ARG A 90 0.25 SIDE CHAIN REMARK 500 7 ARG A 3 0.26 SIDE CHAIN REMARK 500 7 ARG A 7 0.27 SIDE CHAIN REMARK 500 7 ARG A 47 0.32 SIDE CHAIN REMARK 500 7 ARG A 54 0.15 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 155 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL DBREF 1F6V A 2 91 UNP P03763 VPB_BPMU 223 312 SEQADV 1F6V GLY A 1 UNP P03763 CLONING ARTIFACT SEQRES 1 A 91 GLY SER ARG ILE ALA LYS ARG THR ALA ILE ASN LYS THR SEQRES 2 A 91 LYS LYS ALA ASP VAL LYS ALA ILE ALA ASP ALA TRP GLN SEQRES 3 A 91 ILE ASN GLY GLU LYS GLU LEU GLU LEU LEU GLN GLN ILE SEQRES 4 A 91 ALA GLN LYS PRO GLY ALA LEU ARG ILE LEU ASN HIS SER SEQRES 5 A 91 LEU ARG LEU ALA ALA MET THR ALA HIS GLY LYS GLY GLU SEQRES 6 A 91 ARG VAL ASN GLU ASP TYR LEU ARG GLN ALA PHE ARG GLU SEQRES 7 A 91 LEU ASP LEU ASP VAL ASP ILE SER THR LEU LEU ARG ASN HELIX 1 1 LYS A 14 VAL A 18 5 5 HELIX 2 2 LYS A 19 ALA A 24 1 6 HELIX 3 3 GLU A 30 GLN A 38 1 9 HELIX 4 4 ALA A 45 ARG A 54 1 10 HELIX 5 5 LEU A 55 ALA A 57 5 3 HELIX 6 6 ASN A 68 ARG A 77 1 10 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1