HEADER VIRAL PROTEIN, HYDROLASE 26-JUN-00 1F7D TITLE CRYSTAL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP TITLE 2 PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE CRYSTAL FORMS COMPND MOL_ID: 1; COMPND 2 MOLECULE: POL POLYPROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DUTPASE; COMPND 5 EC: 3.6.1.23; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE IMMUNODEFICIENCY VIRUS; SOURCE 3 ORGANISM_TAXID: 11673; SOURCE 4 EXPRESSION_SYSTEM: TRICHOPLUSIA NI; SOURCE 5 EXPRESSION_SYSTEM_COMMON: CABBAGE LOOPER; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 7111; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: FIV-34TF10 KEYWDS EIGHT STRANDED BETA-BARREL, VIRAL PROTEIN, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR G.S.PRASAD,E.A.STURA,J.H.ELDER,C.D.STOUT REVDAT 5 07-FEB-24 1F7D 1 REMARK LINK REVDAT 4 24-JUL-19 1F7D 1 REMARK REVDAT 3 13-JUL-11 1F7D 1 VERSN REVDAT 2 24-FEB-09 1F7D 1 VERSN REVDAT 1 06-SEP-00 1F7D 0 JRNL AUTH G.S.PRASAD,E.A.STURA,J.H.ELDER,C.D.STOUT JRNL TITL STRUCTURES OF FELINE IMMUNODEFICIENCY VIRUS DUTP JRNL TITL 2 PYROPHOSPHATASE AND ITS NUCLEOTIDE COMPLEXES IN THREE JRNL TITL 3 CRYSTAL FORMS. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 56 1100 2000 JRNL REFN ISSN 0907-4449 JRNL PMID 10957629 JRNL DOI 10.1107/S0907444900009197 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.S.PRASAD,E.A.STURA,D.E.MCREE,G.S.LACO,C.HASSELKUS-LIGHT, REMARK 1 AUTH 2 J.H.ELDER,C.D.STOUT REMARK 1 TITL CRYSTAL STRUCTURE OF DUTP PYROPHOSPHATASE FROM FELINE REMARK 1 TITL 2 IMMUNODEFICIENCY VIRUS REMARK 1 REF PROTEIN SCI. V. 5 2429 1996 REMARK 1 REFN ISSN 0961-8368 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : SHELXL-97 REMARK 3 AUTHORS : G.M.SHELDRICK REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : 3% OF THE TOTAL OBSERVED REMARK 3 REFLECTIONS REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (NO CUTOFF). REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : 0.186 REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : 0.179 REMARK 3 FREE R VALUE (NO CUTOFF) : 0.218 REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : 1671 REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : 55495 REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL FOR DATA WITH F>4SIG(F). REMARK 3 R VALUE (WORKING + TEST SET, F>4SIG(F)) : NULL REMARK 3 R VALUE (WORKING SET, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE (F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, F>4SIG(F)) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (F>4SIG(F)) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (F>4SIG(F)) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1782 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 185 REMARK 3 REMARK 3 MODEL REFINEMENT. REMARK 3 OCCUPANCY SUM OF NON-HYDROGEN ATOMS : NULL REMARK 3 OCCUPANCY SUM OF HYDROGEN ATOMS : NULL REMARK 3 NUMBER OF DISCRETELY DISORDERED RESIDUES : NULL REMARK 3 NUMBER OF LEAST-SQUARES PARAMETERS : NULL REMARK 3 NUMBER OF RESTRAINTS : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM RESTRAINT TARGET VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 ANGLE DISTANCES (A) : NULL REMARK 3 SIMILAR DISTANCES (NO TARGET VALUES) (A) : NULL REMARK 3 DISTANCES FROM RESTRAINT PLANES (A) : NULL REMARK 3 ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 NON-ZERO CHIRAL VOLUMES (A**3) : NULL REMARK 3 ANTI-BUMPING DISTANCE RESTRAINTS (A) : NULL REMARK 3 RIGID-BOND ADP COMPONENTS (A**2) : NULL REMARK 3 SIMILAR ADP COMPONENTS (A**2) : NULL REMARK 3 APPROXIMATELY ISOTROPIC ADPS (A**2) : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED: NULL REMARK 3 REMARK 3 STEREOCHEMISTRY TARGET VALUES : NULL REMARK 3 SPECIAL CASE: NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F7D COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1000011334. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-MAR-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.08 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 55495 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.1 REMARK 200 DATA REDUNDANCY : 3.800 REMARK 200 R MERGE (I) : 0.03800 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 11.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 82.3 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.03100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% MPEG 5K, 50MM SODIUM CACODYLATE, REMARK 280 PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 63 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z REMARK 290 3555 -X+Y,-X,Z REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/2 REMARK 290 6555 X-Y,X,Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 43.05850 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 43.05850 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 43.05850 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA,PQS REMARK 350 TOTAL BURIED SURFACE AREA: 9190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 14630 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -70.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 38.52850 REMARK 350 BIOMT2 2 0.866025 -0.500000 0.000000 66.73332 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 3 -0.500000 0.866025 0.000000 -38.52850 REMARK 350 BIOMT2 3 -0.866025 -0.500000 0.000000 66.73332 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 MG MG A 401 LIES ON A SPECIAL POSITION. REMARK 375 MG MG B 402 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 508 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 512 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 564 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 574 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 603 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 653 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP A 119 REMARK 465 SER A 120 REMARK 465 GLU A 121 REMARK 465 ARG A 122 REMARK 465 GLY A 123 REMARK 465 ASP A 124 REMARK 465 ASN A 125 REMARK 465 GLY A 126 REMARK 465 TYR A 127 REMARK 465 GLY A 128 REMARK 465 SER A 129 REMARK 465 THR A 130 REMARK 465 GLY A 131 REMARK 465 VAL A 132 REMARK 465 PHE A 133 REMARK 465 SER A 134 REMARK 465 SER A 135 REMARK 465 TRP A 136 REMARK 465 MET B 318 REMARK 465 ASP B 319 REMARK 465 SER B 320 REMARK 465 GLU B 321 REMARK 465 ARG B 322 REMARK 465 GLY B 323 REMARK 465 ASP B 324 REMARK 465 ASN B 325 REMARK 465 GLY B 326 REMARK 465 TYR B 327 REMARK 465 GLY B 328 REMARK 465 SER B 329 REMARK 465 THR B 330 REMARK 465 GLY B 331 REMARK 465 VAL B 332 REMARK 465 PHE B 333 REMARK 465 SER B 334 REMARK 465 SER B 335 REMARK 465 TRP B 336 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 612 O HOH A 651 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 524 O HOH B 586 3565 2.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 MET A 118 C MET A 118 O 0.140 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 75 NE - CZ - NH2 ANGL. DEV. = -5.0 DEGREES REMARK 500 MET A 82 CG - SD - CE ANGL. DEV. = -9.9 DEGREES REMARK 500 GLU A 109 CA - CB - CG ANGL. DEV. = 16.0 DEGREES REMARK 500 MET A 118 CA - C - O ANGL. DEV. = -26.9 DEGREES REMARK 500 ARG B 212 CD - NE - CZ ANGL. DEV. = 8.4 DEGREES REMARK 500 ARG B 212 NE - CZ - NH1 ANGL. DEV. = 3.9 DEGREES REMARK 500 TYR B 274 CB - CG - CD2 ANGL. DEV. = -3.6 DEGREES REMARK 500 ARG B 295 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 299 -178.09 -175.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 401 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 64 OD1 REMARK 620 2 ASP A 64 OD1 92.1 REMARK 620 3 ASP A 64 OD1 92.1 92.1 REMARK 620 4 HOH A 502 O 89.5 93.0 174.6 REMARK 620 5 HOH A 502 O 174.6 89.5 93.0 85.2 REMARK 620 6 HOH A 502 O 93.0 174.6 89.5 85.2 85.2 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 402 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 264 OD1 REMARK 620 2 ASP B 264 OD1 91.5 REMARK 620 3 ASP B 264 OD1 91.5 91.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F7K RELATED DB: PDB REMARK 900 1F7K CONTAINS THE SAME PROTEIN COMPLEXED WITH DUMP IN P63 REMARK 900 RELATED ID: 1F7N RELATED DB: PDB REMARK 900 1F7N CONTAINS THE SAME PROTEIN COMPLEXED WITH DUMP IN P63 REMARK 900 RELATED ID: 1F7O RELATED DB: PDB REMARK 900 1F7O CONTAINS THE SAME PROTEIN IN P212121 REMARK 900 RELATED ID: 1F7P RELATED DB: PDB REMARK 900 1F7P CONTAINS THE SAME PROTEIN IN COMPLEX WITH DUDP IN P212121 REMARK 900 RELATED ID: 1F7Q RELATED DB: PDB REMARK 900 1F7Q CONTAINS THE SAME PROTEIN IN COMPLEX WITH DUTP IN P212121 REMARK 900 RELATED ID: 1F7R RELATED DB: PDB REMARK 900 1F7R CONTAINS THE SAME PROTEIN IN COMPLEX WITH DUDP IN P213 DBREF 1F7D A 1 136 UNP P16088 POL_FIVPE 711 846 DBREF 1F7D B 201 336 UNP P16088 POL_FIVPE 711 846 SEQRES 1 A 136 MET ILE ILE GLU GLY ASP GLY ILE LEU ASP LYS ARG SER SEQRES 2 A 136 GLU ASP ALA GLY TYR ASP LEU LEU ALA ALA LYS GLU ILE SEQRES 3 A 136 HIS LEU LEU PRO GLY GLU VAL LYS VAL ILE PRO THR GLY SEQRES 4 A 136 VAL LYS LEU MET LEU PRO LYS GLY TYR TRP GLY LEU ILE SEQRES 5 A 136 ILE GLY LYS SER SER ILE GLY SER LYS GLY LEU ASP VAL SEQRES 6 A 136 LEU GLY GLY VAL ILE ASP GLU GLY TYR ARG GLY GLU ILE SEQRES 7 A 136 GLY VAL ILE MET ILE ASN VAL SER ARG LYS SER ILE THR SEQRES 8 A 136 LEU MET GLU ARG GLN LYS ILE ALA GLN LEU ILE ILE LEU SEQRES 9 A 136 PRO CYS LYS HIS GLU VAL LEU GLU GLN GLY LYS VAL VAL SEQRES 10 A 136 MET ASP SER GLU ARG GLY ASP ASN GLY TYR GLY SER THR SEQRES 11 A 136 GLY VAL PHE SER SER TRP SEQRES 1 B 136 MET ILE ILE GLU GLY ASP GLY ILE LEU ASP LYS ARG SER SEQRES 2 B 136 GLU ASP ALA GLY TYR ASP LEU LEU ALA ALA LYS GLU ILE SEQRES 3 B 136 HIS LEU LEU PRO GLY GLU VAL LYS VAL ILE PRO THR GLY SEQRES 4 B 136 VAL LYS LEU MET LEU PRO LYS GLY TYR TRP GLY LEU ILE SEQRES 5 B 136 ILE GLY LYS SER SER ILE GLY SER LYS GLY LEU ASP VAL SEQRES 6 B 136 LEU GLY GLY VAL ILE ASP GLU GLY TYR ARG GLY GLU ILE SEQRES 7 B 136 GLY VAL ILE MET ILE ASN VAL SER ARG LYS SER ILE THR SEQRES 8 B 136 LEU MET GLU ARG GLN LYS ILE ALA GLN LEU ILE ILE LEU SEQRES 9 B 136 PRO CYS LYS HIS GLU VAL LEU GLU GLN GLY LYS VAL VAL SEQRES 10 B 136 MET ASP SER GLU ARG GLY ASP ASN GLY TYR GLY SER THR SEQRES 11 B 136 GLY VAL PHE SER SER TRP HET MG A 401 1 HET MG B 402 1 HETNAM MG MAGNESIUM ION FORMUL 3 MG 2(MG 2+) FORMUL 5 HOH *185(H2 O) HELIX 1 1 LYS A 55 SER A 60 1 6 HELIX 2 2 LYS B 255 SER B 260 1 6 SHEET 1 A 2 ILE A 3 GLU A 4 0 SHEET 2 A 2 LYS A 41 LEU A 42 -1 O LYS A 41 N GLU A 4 SHEET 1 B 4 TYR A 18 LEU A 21 0 SHEET 2 B 4 LYS A 97 PRO A 105 -1 N ILE A 98 O LEU A 20 SHEET 3 B 4 TYR A 48 ILE A 53 -1 N TRP A 49 O LEU A 104 SHEET 4 B 4 VAL A 69 ILE A 70 -1 N ILE A 70 O GLY A 50 SHEET 1 C 2 ILE A 26 LEU A 28 0 SHEET 2 C 2 ILE A 90 LEU A 92 -1 O ILE A 90 N LEU A 28 SHEET 1 D 3 VAL A 33 PRO A 37 0 SHEET 2 D 3 GLY A 79 ASN A 84 -1 O VAL A 80 N ILE A 36 SHEET 3 D 3 LEU A 63 LEU A 66 -1 N ASP A 64 O ILE A 83 SHEET 1 E 2 ILE B 202 GLU B 204 0 SHEET 2 E 2 LYS B 241 MET B 243 -1 O LYS B 241 N GLU B 204 SHEET 1 F 4 TYR B 218 LEU B 221 0 SHEET 2 F 4 LYS B 297 PRO B 305 -1 N ILE B 298 O LEU B 220 SHEET 3 F 4 TYR B 248 ILE B 253 -1 N TRP B 249 O LEU B 304 SHEET 4 F 4 VAL B 269 ILE B 270 -1 N ILE B 270 O GLY B 250 SHEET 1 G 2 ILE B 226 LEU B 228 0 SHEET 2 G 2 ILE B 290 LEU B 292 -1 O ILE B 290 N LEU B 228 SHEET 1 H 3 VAL B 233 PRO B 237 0 SHEET 2 H 3 GLY B 279 ASN B 284 -1 O VAL B 280 N ILE B 236 SHEET 3 H 3 LEU B 263 LEU B 266 -1 O ASP B 264 N ILE B 283 LINK OD1 ASP A 64 MG MG A 401 1555 1555 2.07 LINK OD1 ASP A 64 MG MG A 401 2555 1555 2.07 LINK OD1 ASP A 64 MG MG A 401 3555 1555 2.07 LINK MG MG A 401 O HOH A 502 1555 1555 2.15 LINK MG MG A 401 O HOH A 502 1555 2555 2.15 LINK MG MG A 401 O HOH A 502 1555 3555 2.15 LINK OD1 ASP B 264 MG MG B 402 1555 1555 2.07 LINK OD1 ASP B 264 MG MG B 402 2665 1555 2.07 LINK OD1 ASP B 264 MG MG B 402 3565 1555 2.07 SITE 1 AC1 2 ASP A 64 HOH A 502 SITE 1 AC2 1 ASP B 264 CRYST1 77.057 77.057 86.117 90.00 90.00 120.00 P 63 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012977 0.007493 0.000000 0.00000 SCALE2 0.000000 0.014985 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011612 0.00000