HEADER INHIBITOR/OXIDOREDUCTASE 07-JUL-00 1F96 TITLE SOLUTION STRUCTURE OF DYNEIN LIGHT CHAIN 8 (DLC8) AND NNOS PEPTIDE TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: DYNEIN LIGHT CHAIN 8; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: DLC8 BINDING REGION; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (NNOS, NEURONAL NITRIC OXIDE SYNTHASE); COMPND 8 CHAIN: C, D; COMPND 9 FRAGMENT: DLC8-BINDING DOMAIN OF NNOS; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_VECTOR: PET14B; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES; SOURCE 11 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS. KEYWDS DYNEIN, LIGHT CHAIN, DLC8, NNOS, INHIBITOR-OXIDOREDUCTASE COMPLEX EXPDTA SOLUTION NMR NUMMDL 20 AUTHOR J.S.FAN,Q.ZHANG,H.TOCHIO,M.LI,M.ZHANG REVDAT 5 22-MAY-24 1F96 1 REMARK REVDAT 4 23-FEB-22 1F96 1 REMARK REVDAT 3 24-FEB-09 1F96 1 VERSN REVDAT 2 01-APR-03 1F96 1 JRNL REVDAT 1 28-FEB-01 1F96 0 JRNL AUTH J.FAN,Q.ZHANG,H.TOCHIO,M.LI,M.ZHANG JRNL TITL STRUCTURAL BASIS OF DIVERSE SEQUENCE-DEPENDENT TARGET JRNL TITL 2 RECOGNITION BY THE 8 KDA DYNEIN LIGHT CHAIN. JRNL REF J.MOL.BIOL. V. 306 97 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11178896 JRNL DOI 10.1006/JMBI.2000.4374 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : VNMR 6.1B, CNS 1.0 REMARK 3 AUTHORS : VARIAN (VNMR), BRUNGER, A (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1F96 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUL-00. REMARK 100 THE DEPOSITION ID IS D_1000011397. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303 REMARK 210 PH : 7.0 REMARK 210 IONIC STRENGTH : 100MM REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1.5MM DLC8/NNOS PPETIDE COMPLEX REMARK 210 15N; 100MM PHOSPHATE BUFFER; REMARK 210 10MM DTT; 90%H2O AND 10% D2O; REMARK 210 1.5MM DLC8/NNOS PPETIDE COMPLEX REMARK 210 15N,13C; 100MM PHOSPHATE BUFFER; REMARK 210 10MM DTT; 90%H2O AND 10% D2O; REMARK 210 1.5MM DLC8/NNOS PPETIDE COMPLEX ; REMARK 210 100MM PHOSPHATE BUFFER; 10MM REMARK 210 DTT; 99.9% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; 3D_13C REMARK 210 -SEPARATED_NOESY; 3D_15N- REMARK 210 SEPARATED_NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 750 MHZ REMARK 210 SPECTROMETER MODEL : INOVA REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, X-PLOR 3.8 REMARK 210 METHOD USED : TORSION ANGLE DYNAMICS REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 20 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING TRIPLE-RESONANCE NMR REMARK 210 SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (RES=RESIDUE NAME; REMARK 470 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 470 MODELS 1-20 REMARK 470 RES CSSEQI ATOMS REMARK 470 ASP C 9 CA REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 CYS A 2 -44.63 -178.85 REMARK 500 1 ARG A 4 134.91 -170.22 REMARK 500 1 LYS A 5 -80.39 -62.73 REMARK 500 1 ALA A 6 120.72 60.48 REMARK 500 1 LYS A 9 -44.93 -137.33 REMARK 500 1 ASP A 12 52.48 -161.55 REMARK 500 1 ASN A 51 138.26 96.63 REMARK 500 1 ARG A 60 37.56 -178.35 REMARK 500 1 ASN A 61 79.39 170.62 REMARK 500 1 LEU A 78 145.29 -170.24 REMARK 500 1 PHE A 86 127.50 -175.15 REMARK 500 1 LYS B 5 -134.32 -73.02 REMARK 500 1 ALA B 6 127.14 63.73 REMARK 500 1 LYS B 9 -41.23 -137.73 REMARK 500 1 ASP B 12 62.59 -178.71 REMARK 500 1 ASN B 51 141.21 88.83 REMARK 500 1 ARG B 60 28.70 -160.48 REMARK 500 1 ASN B 61 82.34 167.33 REMARK 500 1 HIS B 72 69.55 -164.82 REMARK 500 1 PHE B 86 129.74 -177.40 REMARK 500 1 GLN C 7 69.48 -163.52 REMARK 500 1 HIS C 17 133.23 67.85 REMARK 500 1 GLN D 7 74.97 -159.14 REMARK 500 1 ASP D 9 43.07 -178.93 REMARK 500 1 ASP D 11 48.81 -86.50 REMARK 500 1 SER D 16 -133.63 -67.57 REMARK 500 1 HIS D 17 131.25 -172.58 REMARK 500 2 CYS A 2 145.06 -176.42 REMARK 500 2 ARG A 4 48.45 -79.71 REMARK 500 2 ASN A 10 59.73 -155.03 REMARK 500 2 ASP A 12 52.28 -175.47 REMARK 500 2 TYR A 32 -45.64 -145.51 REMARK 500 2 ASN A 51 143.73 93.62 REMARK 500 2 ARG A 60 35.15 -174.19 REMARK 500 2 ASN A 61 81.43 165.46 REMARK 500 2 HIS A 72 54.77 -150.25 REMARK 500 2 GLN A 80 37.11 178.90 REMARK 500 2 PHE A 86 131.57 -179.57 REMARK 500 2 CYS B 2 134.21 62.72 REMARK 500 2 ARG B 4 130.87 -176.64 REMARK 500 2 LYS B 5 -126.46 -166.33 REMARK 500 2 ALA B 6 132.27 62.30 REMARK 500 2 LYS B 9 -42.83 -139.55 REMARK 500 2 ASN B 10 51.61 -115.62 REMARK 500 2 ASP B 12 53.08 -153.00 REMARK 500 2 MET B 13 -174.67 -176.54 REMARK 500 2 TYR B 32 -43.98 -145.04 REMARK 500 2 ASN B 33 54.02 70.48 REMARK 500 2 LYS B 49 -70.19 -84.29 REMARK 500 2 ASN B 51 141.82 96.56 REMARK 500 REMARK 500 THIS ENTRY HAS 665 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1F3C RELATED DB: PDB REMARK 900 THIS IS A SOLUTION STRUCTURE OF DLC8 COMPLEXED WITH ITS BINDING REMARK 900 TARGET, NNOS DBREF 1F96 A 1 89 UNP P63170 DYL1_RAT 1 89 DBREF 1F96 B 1 89 UNP P63170 DYL1_RAT 1 89 DBREF 1F96 C 1 18 PDB 1F96 1F96 1 18 DBREF 1F96 D 1 18 PDB 1F96 1F96 1 18 SEQRES 1 A 89 MET CYS ASP ARG LYS ALA VAL ILE LYS ASN ALA ASP MET SEQRES 2 A 89 SER GLU GLU MET GLN GLN ASP SER VAL GLU CYS ALA THR SEQRES 3 A 89 GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP ILE ALA SEQRES 4 A 89 ALA HIS ILE LYS LYS GLU PHE ASP LYS LYS TYR ASN PRO SEQRES 5 A 89 THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SER TYR SEQRES 6 A 89 VAL THR HIS GLU THR LYS HIS PHE ILE TYR PHE TYR LEU SEQRES 7 A 89 GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 B 89 MET CYS ASP ARG LYS ALA VAL ILE LYS ASN ALA ASP MET SEQRES 2 B 89 SER GLU GLU MET GLN GLN ASP SER VAL GLU CYS ALA THR SEQRES 3 B 89 GLN ALA LEU GLU LYS TYR ASN ILE GLU LYS ASP ILE ALA SEQRES 4 B 89 ALA HIS ILE LYS LYS GLU PHE ASP LYS LYS TYR ASN PRO SEQRES 5 B 89 THR TRP HIS CYS ILE VAL GLY ARG ASN PHE GLY SER TYR SEQRES 6 B 89 VAL THR HIS GLU THR LYS HIS PHE ILE TYR PHE TYR LEU SEQRES 7 B 89 GLY GLN VAL ALA ILE LEU LEU PHE LYS SER GLY SEQRES 1 C 18 MET LYS ASP THR GLY ILE GLN VAL ASP ARG ASP LEU ASP SEQRES 2 C 18 GLY LYS SER HIS LYS SEQRES 1 D 18 MET LYS ASP THR GLY ILE GLN VAL ASP ARG ASP LEU ASP SEQRES 2 D 18 GLY LYS SER HIS LYS HELIX 1 1 SER A 14 TYR A 32 1 19 HELIX 2 2 ILE A 34 ASN A 51 1 18 HELIX 3 3 SER B 14 TYR B 32 1 19 HELIX 4 4 ILE B 34 TYR B 50 1 17 SHEET 1 A 6 VAL A 7 ILE A 8 0 SHEET 2 A 6 ILE A 74 LEU A 78 -1 O TYR A 77 N VAL A 7 SHEET 3 A 6 VAL A 81 LYS A 87 -1 O VAL A 81 N LEU A 78 SHEET 4 A 6 TRP A 54 GLY A 59 -1 N HIS A 55 O PHE A 86 SHEET 5 A 6 PHE B 62 HIS B 68 -1 N GLY B 63 O VAL A 58 SHEET 6 A 6 LYS D 2 VAL D 8 -1 N LYS D 2 O HIS B 68 SHEET 1 B 6 VAL B 7 ILE B 8 0 SHEET 2 B 6 ILE B 74 LEU B 78 -1 O TYR B 77 N VAL B 7 SHEET 3 B 6 VAL B 81 LYS B 87 -1 O VAL B 81 N LEU B 78 SHEET 4 B 6 TRP B 54 GLY B 59 -1 N HIS B 55 O PHE B 86 SHEET 5 B 6 ASN A 61 VAL A 66 -1 O GLY A 63 N VAL B 58 SHEET 6 B 6 THR C 4 ASP C 9 -1 N THR C 4 O VAL A 66 CISPEP 1 PRO A 52 THR A 53 1 0.39 CISPEP 2 PRO B 52 THR B 53 1 0.39 CISPEP 3 PRO A 52 THR A 53 2 0.29 CISPEP 4 PRO B 52 THR B 53 2 0.55 CISPEP 5 PRO A 52 THR A 53 3 0.38 CISPEP 6 PRO B 52 THR B 53 3 0.00 CISPEP 7 PRO A 52 THR A 53 4 0.26 CISPEP 8 PRO B 52 THR B 53 4 0.23 CISPEP 9 PRO A 52 THR A 53 5 0.07 CISPEP 10 PRO B 52 THR B 53 5 0.19 CISPEP 11 PRO A 52 THR A 53 6 0.30 CISPEP 12 PRO B 52 THR B 53 6 0.38 CISPEP 13 PRO A 52 THR A 53 7 0.13 CISPEP 14 PRO B 52 THR B 53 7 0.41 CISPEP 15 PRO A 52 THR A 53 8 0.14 CISPEP 16 PRO B 52 THR B 53 8 0.05 CISPEP 17 PRO A 52 THR A 53 9 0.17 CISPEP 18 PRO B 52 THR B 53 9 0.41 CISPEP 19 PRO A 52 THR A 53 10 -0.09 CISPEP 20 PRO B 52 THR B 53 10 0.07 CISPEP 21 PRO A 52 THR A 53 11 0.05 CISPEP 22 PRO B 52 THR B 53 11 0.15 CISPEP 23 PRO A 52 THR A 53 12 0.14 CISPEP 24 PRO B 52 THR B 53 12 0.32 CISPEP 25 PRO A 52 THR A 53 13 0.05 CISPEP 26 PRO B 52 THR B 53 13 0.27 CISPEP 27 PRO A 52 THR A 53 14 0.06 CISPEP 28 PRO B 52 THR B 53 14 0.44 CISPEP 29 PRO A 52 THR A 53 15 0.18 CISPEP 30 PRO B 52 THR B 53 15 0.01 CISPEP 31 PRO A 52 THR A 53 16 0.23 CISPEP 32 PRO B 52 THR B 53 16 0.35 CISPEP 33 PRO A 52 THR A 53 17 0.04 CISPEP 34 PRO B 52 THR B 53 17 -0.13 CISPEP 35 PRO A 52 THR A 53 18 0.00 CISPEP 36 PRO B 52 THR B 53 18 0.18 CISPEP 37 PRO A 52 THR A 53 19 0.20 CISPEP 38 PRO B 52 THR B 53 19 0.37 CISPEP 39 PRO A 52 THR A 53 20 0.12 CISPEP 40 PRO B 52 THR B 53 20 0.14 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1