HEADER BLOOD CLOTTING 28-DEC-98 1FAK TITLE HUMAN TISSUE FACTOR COMPLEXED WITH COAGULATION FACTOR VIIA INHIBITED TITLE 2 WITH A BPTI-MUTANT CAVEAT 1FAK GLC L 600 HAS WRONG CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (BLOOD COAGULATION FACTOR VIIA); COMPND 3 CHAIN: L; COMPND 4 FRAGMENT: LIGHT CHAIN; COMPND 5 EC: 3.4.21.21; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: PROTEIN (BLOOD COAGULATION FACTOR VIIA); COMPND 9 CHAIN: H; COMPND 10 FRAGMENT: HEAVY CHAIN; COMPND 11 EC: 3.4.21.21; COMPND 12 ENGINEERED: YES; COMPND 13 MOL_ID: 3; COMPND 14 MOLECULE: PROTEIN (SOLUBLE TISSUE FACTOR); COMPND 15 CHAIN: T; COMPND 16 ENGINEERED: YES; COMPND 17 MOL_ID: 4; COMPND 18 MOLECULE: PROTEIN (5L15); COMPND 19 CHAIN: I; COMPND 20 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 6 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: KIDNEY CELLS (BHK); SOURCE 9 MOL_ID: 2; SOURCE 10 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 11 ORGANISM_COMMON: HUMAN; SOURCE 12 ORGANISM_TAXID: 9606; SOURCE 13 EXPRESSION_SYSTEM: CRICETULUS GRISEUS; SOURCE 14 EXPRESSION_SYSTEM_COMMON: CHINESE HAMSTER; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 10029; SOURCE 16 EXPRESSION_SYSTEM_CELL_LINE: KIDNEY CELLS (BHK); SOURCE 17 MOL_ID: 3; SOURCE 18 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 19 ORGANISM_COMMON: HUMAN; SOURCE 20 ORGANISM_TAXID: 9606; SOURCE 21 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 22 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 23 MOL_ID: 4; SOURCE 24 SYNTHETIC: YES; SOURCE 25 OTHER_DETAILS: CHEMICALLY SYNTHESIZED KEYWDS COMPLEX(SERINE PROTEASE-COFACTOR-LIGAND), BLOOD COAGULATION, SERINE KEYWDS 2 PROTEASE, COMPLEX, CO-FACTOR, RECEPTOR ENZYME, INHIBITOR, GLA, EGF, KEYWDS 3 COMPLEX (SERINE PROTEASE-COFACTOR-LIGAND), BLOOD CLOTTING EXPDTA X-RAY DIFFRACTION AUTHOR E.ZHANG,R.ST CHARLES,A.TULINSKY REVDAT 5 31-MAY-23 1FAK 1 HETSYN REVDAT 4 29-JUL-20 1FAK 1 CAVEAT COMPND REMARK SEQADV REVDAT 4 2 1 HETNAM LINK SITE REVDAT 3 24-FEB-09 1FAK 1 VERSN REVDAT 2 10-JAN-01 1FAK 1 SOURCE REMARK MODRES REVDAT 1 03-DEC-99 1FAK 0 JRNL AUTH E.ZHANG,R.ST CHARLES,A.TULINSKY JRNL TITL STRUCTURE OF EXTRACELLULAR TISSUE FACTOR COMPLEXED WITH JRNL TITL 2 FACTOR VIIA INHIBITED WITH A BPTI MUTANT. JRNL REF J.MOL.BIOL. V. 285 2089 1999 JRNL REFN ISSN 0022-2836 JRNL PMID 9925787 JRNL DOI 10.1006/JMBI.1998.2452 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PROLSQ REMARK 3 AUTHORS : KONNERT,HENDRICKSON REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 9.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 80.0 REMARK 3 NUMBER OF REFLECTIONS : 49719 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING + TEST SET) : 0.237 REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 REMARK 3 FIT/AGREEMENT OF MODEL WITH ALL DATA. REMARK 3 R VALUE (WORKING + TEST SET, NO CUTOFF) : NULL REMARK 3 R VALUE (WORKING SET, NO CUTOFF) : NULL REMARK 3 FREE R VALUE (NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%, NO CUTOFF) : NULL REMARK 3 FREE R VALUE TEST SET COUNT (NO CUTOFF) : NULL REMARK 3 TOTAL NUMBER OF REFLECTIONS (NO CUTOFF) : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4716 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 23 REMARK 3 SOLVENT ATOMS : 340 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 DISTANCE RESTRAINTS. RMS SIGMA REMARK 3 BOND LENGTH (A) : 0.022 ; 0.020 REMARK 3 ANGLE DISTANCE (A) : 0.041 ; 0.030 REMARK 3 INTRAPLANAR 1-4 DISTANCE (A) : 0.054 ; 0.050 REMARK 3 H-BOND OR METAL COORDINATION (A) : NULL ; NULL REMARK 3 REMARK 3 PLANE RESTRAINT (A) : 0.013 ; 0.015 REMARK 3 CHIRAL-CENTER RESTRAINT (A**3) : 0.219 ; 0.150 REMARK 3 REMARK 3 NON-BONDED CONTACT RESTRAINTS. REMARK 3 SINGLE TORSION (A) : 0.195 ; 0.600 REMARK 3 MULTIPLE TORSION (A) : 0.238 ; 0.600 REMARK 3 H-BOND (X...Y) (A) : 0.247 ; 0.600 REMARK 3 H-BOND (X-H...Y) (A) : NULL ; NULL REMARK 3 REMARK 3 CONFORMATIONAL TORSION ANGLE RESTRAINTS. REMARK 3 SPECIFIED (DEGREES) : NULL ; NULL REMARK 3 PLANAR (DEGREES) : 3.100 ; 1.500 REMARK 3 STAGGERED (DEGREES) : 21.000; 20.000 REMARK 3 TRANSVERSE (DEGREES) : 20.900; 25.000 REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.450 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.140 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.830 ; 3.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.920 ; 5.000 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FAK COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-AUG-99. REMARK 100 THE DEPOSITION ID IS D_1000007343. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 17-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.89 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : SIEMENS REMARK 200 INTENSITY-INTEGRATION SOFTWARE : SAINT REMARK 200 DATA SCALING SOFTWARE : SAINT REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 61209 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 87.0 REMARK 200 DATA REDUNDANCY : 2.350 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 64.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PH 5.6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 87.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 87.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 31.74500 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 95.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 31.74500 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 95.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 87.65000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 31.74500 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 95.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 87.65000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 31.74500 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 95.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7610 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26790 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -33.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, T, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA L 1 REMARK 465 ASN L 2 REMARK 465 ALA L 3 REMARK 465 PHE L 4 REMARK 465 LEU L 5 REMARK 465 CGU L 6 REMARK 465 CGU L 7 REMARK 465 LEU L 8 REMARK 465 ARG L 9 REMARK 465 PRO L 10 REMARK 465 GLY L 11 REMARK 465 SER L 12 REMARK 465 LEU L 13 REMARK 465 CGU L 14 REMARK 465 ARG L 15 REMARK 465 CGU L 16 REMARK 465 CYS L 17 REMARK 465 LYS L 18 REMARK 465 CGU L 19 REMARK 465 CGU L 20 REMARK 465 GLN L 21 REMARK 465 CYS L 22 REMARK 465 SER L 23 REMARK 465 PHE L 24 REMARK 465 CGU L 25 REMARK 465 CGU L 26 REMARK 465 ALA L 27 REMARK 465 ARG L 28 REMARK 465 CGU L 29 REMARK 465 ILE L 30 REMARK 465 PHE L 31 REMARK 465 LYS L 32 REMARK 465 ASP L 33 REMARK 465 ALA L 34 REMARK 465 CGU L 35 REMARK 465 ARG L 144 REMARK 465 ASN L 145 REMARK 465 ALA L 146 REMARK 465 SER L 147 REMARK 465 LYS L 148 REMARK 465 PRO L 149 REMARK 465 GLN L 150 REMARK 465 GLY L 151 REMARK 465 ARG L 152 REMARK 465 VAL H 170E REMARK 465 GLY H 170F REMARK 465 ASP H 170G REMARK 465 ASN T 5 REMARK 465 GLY T 81 REMARK 465 ASN T 82 REMARK 465 VAL T 83 REMARK 465 GLU T 84 REMARK 465 SER T 85 REMARK 465 THR T 86 REMARK 465 GLY T 87 REMARK 465 SER T 88 REMARK 465 ALA T 89 REMARK 465 VAL T 119 REMARK 465 GLY T 120 REMARK 465 THR T 121 REMARK 465 LYS T 159 REMARK 465 SER T 160 REMARK 465 SER T 161 REMARK 465 SER T 162 REMARK 465 SER T 163 REMARK 465 ASP T 180 REMARK 465 LYS T 181 REMARK 465 GLY T 182 REMARK 465 GLU T 183 REMARK 465 ASN T 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS I 30 SG CYS I 51 2.01 REMARK 500 OE2 GLU I 7 NZ LYS I 41 2.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 SER H 92 CB SER H 92 OG 0.097 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 36 CD - NE - CZ ANGL. DEV. = -10.9 DEGREES REMARK 500 ARG L 36 NE - CZ - NH1 ANGL. DEV. = -7.7 DEGREES REMARK 500 ARG L 36 NE - CZ - NH2 ANGL. DEV. = 4.6 DEGREES REMARK 500 ASP L 46 CB - CG - OD2 ANGL. DEV. = -5.7 DEGREES REMARK 500 ARG L 79 NE - CZ - NH1 ANGL. DEV. = 4.6 DEGREES REMARK 500 ARG L 79 NE - CZ - NH2 ANGL. DEV. = -6.4 DEGREES REMARK 500 HIS L 84 CA - CB - CG ANGL. DEV. = 10.2 DEGREES REMARK 500 GLU L 94 CG - CD - OE2 ANGL. DEV. = 12.2 DEGREES REMARK 500 GLU L 99 CG - CD - OE1 ANGL. DEV. = 13.2 DEGREES REMARK 500 GLU L 99 CG - CD - OE2 ANGL. DEV. = -13.8 DEGREES REMARK 500 TYR L 101 CB - CG - CD2 ANGL. DEV. = -6.5 DEGREES REMARK 500 TYR L 101 CB - CG - CD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 CYS L 112 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG L 113 CA - CB - CG ANGL. DEV. = 18.1 DEGREES REMARK 500 ASP L 123 CB - CG - OD1 ANGL. DEV. = 9.6 DEGREES REMARK 500 CYS L 135 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 ALA H 39 N - CA - CB ANGL. DEV. = 8.8 DEGREES REMARK 500 ALA H 39 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 SER H 54 O - C - N ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG H 62 NE - CZ - NH1 ANGL. DEV. = 4.7 DEGREES REMARK 500 ARG H 62 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 GLU H 80 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ARG H 83 NE - CZ - NH1 ANGL. DEV. = 4.3 DEGREES REMARK 500 ARG H 83 NE - CZ - NH2 ANGL. DEV. = -4.6 DEGREES REMARK 500 VAL H 85 CA - CB - CG1 ANGL. DEV. = 10.6 DEGREES REMARK 500 ASN H 100 CB - CA - C ANGL. DEV. = 12.4 DEGREES REMARK 500 ARG H 107 CD - NE - CZ ANGL. DEV. = 25.9 DEGREES REMARK 500 ARG H 107 NE - CZ - NH1 ANGL. DEV. = 7.3 DEGREES REMARK 500 ARG H 107 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ASP H 116 CB - CG - OD1 ANGL. DEV. = 8.9 DEGREES REMARK 500 ASP H 116 CB - CG - OD2 ANGL. DEV. = -7.0 DEGREES REMARK 500 GLU H 125 OE1 - CD - OE2 ANGL. DEV. = 14.5 DEGREES REMARK 500 ARG H 126 CD - NE - CZ ANGL. DEV. = 13.1 DEGREES REMARK 500 ARG H 126 NE - CZ - NH1 ANGL. DEV. = 7.7 DEGREES REMARK 500 ARG H 134 NE - CZ - NH1 ANGL. DEV. = -6.0 DEGREES REMARK 500 THR H 151 CA - CB - CG2 ANGL. DEV. = 8.9 DEGREES REMARK 500 ARG H 170C CD - NE - CZ ANGL. DEV. = 14.7 DEGREES REMARK 500 ARG H 170C NE - CZ - NH1 ANGL. DEV. = 5.7 DEGREES REMARK 500 PHE H 181 N - CA - CB ANGL. DEV. = 11.3 DEGREES REMARK 500 TYR H 184 CB - CG - CD2 ANGL. DEV. = 3.8 DEGREES REMARK 500 SER H 185 N - CA - CB ANGL. DEV. = 9.1 DEGREES REMARK 500 SER H 185 CA - CB - OG ANGL. DEV. = 17.0 DEGREES REMARK 500 ASP H 186 CB - CG - OD1 ANGL. DEV. = 6.7 DEGREES REMARK 500 ARG H 204 NE - CZ - NH2 ANGL. DEV. = -4.0 DEGREES REMARK 500 GLN H 217 CB - CA - C ANGL. DEV. = 12.8 DEGREES REMARK 500 GLN H 217 CA - CB - CG ANGL. DEV. = 13.7 DEGREES REMARK 500 ARG H 243 CD - NE - CZ ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG H 243 NE - CZ - NH1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ARG H 243 NE - CZ - NH2 ANGL. DEV. = -3.4 DEGREES REMARK 500 ARG H 247 CD - NE - CZ ANGL. DEV. = 12.8 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 74 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN L 100 -104.54 -115.92 REMARK 500 LYS H 24 117.94 -37.83 REMARK 500 CYS H 27 53.77 -142.95 REMARK 500 ASN H 48 -176.24 -177.94 REMARK 500 SER H 54 -157.89 -148.80 REMARK 500 HIS H 71 -57.82 -142.23 REMARK 500 PRO H 170I 174.03 -57.21 REMARK 500 ASP H 189 -177.10 -171.37 REMARK 500 ARG H 204 49.43 38.74 REMARK 500 SER H 214 -75.68 -126.52 REMARK 500 ASN T 11 63.56 61.66 REMARK 500 PHE T 19 -6.58 77.33 REMARK 500 PRO T 92 167.62 -48.54 REMARK 500 ASN I 44 116.11 -164.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG H 134 0.10 SIDE CHAIN REMARK 500 ARG H 230 0.08 SIDE CHAIN REMARK 500 ARG I 53 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA L 602 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP L 46 OD2 REMARK 620 2 GLY L 47 O 79.2 REMARK 620 3 GLN L 49 OE1 77.4 85.1 REMARK 620 4 ASP L 63 OD2 162.7 106.9 118.8 REMARK 620 5 ASP L 63 OD1 145.9 101.0 68.7 50.2 REMARK 620 6 GLN L 64 O 86.4 155.8 72.8 92.6 80.3 REMARK 620 7 HOH L 669 O 77.7 111.2 146.8 85.0 131.2 84.1 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA H 258 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU H 70 OE1 REMARK 620 2 ASP H 72 O 78.7 REMARK 620 3 GLU H 75 O 139.1 67.7 REMARK 620 4 GLU H 80 OE2 111.2 170.1 102.9 REMARK 620 5 HOH H 281 O 81.2 75.8 111.0 105.7 REMARK 620 6 HOH H 295 O 84.0 82.0 69.2 98.0 155.3 REMARK 620 N 1 2 3 4 5 DBREF 1FAK L 1 152 UNP P08709 FA7_HUMAN 61 212 DBREF 1FAK H 16 257 UNP P08709 FA7_HUMAN 213 466 DBREF 1FAK T 5 210 UNP P13726 TF_HUMAN 37 242 DBREF 1FAK I 1 55 UNP P00974 BPT1_BOVIN 37 90 SEQADV 1FAK ASP I 11 UNP P00974 THR 46 CONFLICT SEQADV 1FAK ARG I 15 UNP P00974 LYS 50 CONFLICT SEQADV 1FAK LEU I 17 UNP P00974 ARG 52 CONFLICT SEQADV 1FAK HIS I 18 UNP P00974 ILE 53 CONFLICT SEQADV 1FAK LEU I 19 UNP P00974 ILE 54 CONFLICT SEQADV 1FAK TYR I 34 UNP P00974 VAL 69 CONFLICT SEQADV 1FAK LEU I 39 UNP P00974 ARG 74 CONFLICT SEQADV 1FAK GLU I 46 UNP P00974 LYS 81 CONFLICT SEQRES 1 L 152 ALA ASN ALA PHE LEU CGU CGU LEU ARG PRO GLY SER LEU SEQRES 2 L 152 CGU ARG CGU CYS LYS CGU CGU GLN CYS SER PHE CGU CGU SEQRES 3 L 152 ALA ARG CGU ILE PHE LYS ASP ALA CGU ARG THR LYS LEU SEQRES 4 L 152 PHE TRP ILE SER TYR SER ASP GLY ASP GLN CYS ALA SER SEQRES 5 L 152 SER PRO CYS GLN ASN GLY GLY SER CYS LYS ASP GLN LEU SEQRES 6 L 152 GLN SER TYR ILE CYS PHE CYS LEU PRO ALA PHE GLU GLY SEQRES 7 L 152 ARG ASN CYS GLU THR HIS LYS ASP ASP GLN LEU ILE CYS SEQRES 8 L 152 VAL ASN GLU ASN GLY GLY CYS GLU GLN TYR CYS SER ASP SEQRES 9 L 152 HIS THR GLY THR LYS ARG SER CYS ARG CYS HIS GLU GLY SEQRES 10 L 152 TYR SER LEU LEU ALA ASP GLY VAL SER CYS THR PRO THR SEQRES 11 L 152 VAL GLU TYR PRO CYS GLY LYS ILE PRO ILE LEU GLU LYS SEQRES 12 L 152 ARG ASN ALA SER LYS PRO GLN GLY ARG SEQRES 1 H 254 ILE VAL GLY GLY LYS VAL CYS PRO LYS GLY GLU CYS PRO SEQRES 2 H 254 TRP GLN VAL LEU LEU LEU VAL ASN GLY ALA GLN LEU CYS SEQRES 3 H 254 GLY GLY THR LEU ILE ASN THR ILE TRP VAL VAL SER ALA SEQRES 4 H 254 ALA HIS CYS PHE ASP LYS ILE LYS ASN TRP ARG ASN LEU SEQRES 5 H 254 ILE ALA VAL LEU GLY GLU HIS ASP LEU SER GLU HIS ASP SEQRES 6 H 254 GLY ASP GLU GLN SER ARG ARG VAL ALA GLN VAL ILE ILE SEQRES 7 H 254 PRO SER THR TYR VAL PRO GLY THR THR ASN HIS ASP ILE SEQRES 8 H 254 ALA LEU LEU ARG LEU HIS GLN PRO VAL VAL LEU THR ASP SEQRES 9 H 254 HIS VAL VAL PRO LEU CYS LEU PRO GLU ARG THR PHE SER SEQRES 10 H 254 GLU ARG THR LEU ALA PHE VAL ARG PHE SER LEU VAL SER SEQRES 11 H 254 GLY TRP GLY GLN LEU LEU ASP ARG GLY ALA THR ALA LEU SEQRES 12 H 254 GLU LEU MET VAL LEU ASN VAL PRO ARG LEU MET THR GLN SEQRES 13 H 254 ASP CYS LEU GLN GLN SER ARG LYS VAL GLY ASP SER PRO SEQRES 14 H 254 ASN ILE THR GLU TYR MET PHE CYS ALA GLY TYR SER ASP SEQRES 15 H 254 GLY SER LYS ASP SER CYS LYS GLY ASP SER GLY GLY PRO SEQRES 16 H 254 HIS ALA THR HIS TYR ARG GLY THR TRP TYR LEU THR GLY SEQRES 17 H 254 ILE VAL SER TRP GLY GLN GLY CYS ALA THR VAL GLY HIS SEQRES 18 H 254 PHE GLY VAL TYR THR ARG VAL SER GLN TYR ILE GLU TRP SEQRES 19 H 254 LEU GLN LYS LEU MET ARG SER GLU PRO ARG PRO GLY VAL SEQRES 20 H 254 LEU LEU ARG ALA PRO PHE PRO SEQRES 1 T 206 ASN THR VAL ALA ALA TYR ASN LEU THR TRP LYS SER THR SEQRES 2 T 206 ASN PHE LYS THR ILE LEU GLU TRP GLU PRO LYS PRO VAL SEQRES 3 T 206 ASN GLN VAL TYR THR VAL GLN ILE SER THR LYS SER GLY SEQRES 4 T 206 ASP TRP LYS SER LYS CYS PHE TYR THR THR ASP THR GLU SEQRES 5 T 206 CYS ASP LEU THR ASP GLU ILE VAL LYS ASP VAL LYS GLN SEQRES 6 T 206 THR TYR LEU ALA ARG VAL PHE SER TYR PRO ALA GLY ASN SEQRES 7 T 206 VAL GLU SER THR GLY SER ALA GLY GLU PRO LEU TYR GLU SEQRES 8 T 206 ASN SER PRO GLU PHE THR PRO TYR LEU GLU THR ASN LEU SEQRES 9 T 206 GLY GLN PRO THR ILE GLN SER PHE GLU GLN VAL GLY THR SEQRES 10 T 206 LYS VAL ASN VAL THR VAL GLU ASP GLU ARG THR LEU VAL SEQRES 11 T 206 ARG ARG ASN ASN THR PHE LEU SER LEU ARG ASP VAL PHE SEQRES 12 T 206 GLY LYS ASP LEU ILE TYR THR LEU TYR TYR TRP LYS SER SEQRES 13 T 206 SER SER SER GLY LYS LYS THR ALA LYS THR ASN THR ASN SEQRES 14 T 206 GLU PHE LEU ILE ASP VAL ASP LYS GLY GLU ASN TYR CYS SEQRES 15 T 206 PHE SER VAL GLN ALA VAL ILE PRO SER ARG THR VAL ASN SEQRES 16 T 206 ARG LYS SER THR ASP SER PRO VAL GLU CYS MET SEQRES 1 I 55 ALA PRO ASP PHE CYS LEU GLU PRO PRO TYR ASP GLY PRO SEQRES 2 I 55 CYS ARG ALA LEU HIS LEU ARG TYR PHE TYR ASN ALA LYS SEQRES 3 I 55 ALA GLY LEU CYS GLN THR PHE TYR TYR GLY GLY CYS LEU SEQRES 4 I 55 ALA LYS ARG ASN ASN PHE GLU SER ALA GLU ASP CYS MET SEQRES 5 I 55 ARG THR CYS MODRES 1FAK SER L 52 SER GLYCOSYLATION SITE MODRES 1FAK SER L 60 SER GLYCOSYLATION SITE HET GLC L 600 11 HET FUC L 601 10 HET CA L 602 1 HET CA H 258 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM FUC ALPHA-L-FUCOPYRANOSE HETNAM CA CALCIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE HETSYN FUC ALPHA-L-FUCOSE; 6-DEOXY-ALPHA-L-GALACTOPYRANOSE; L- HETSYN 2 FUC FUCOSE; FUCOSE FORMUL 5 GLC C6 H12 O6 FORMUL 6 FUC C6 H12 O5 FORMUL 7 CA 2(CA 2+) FORMUL 9 HOH *340(H2 O) HELIX 1 1 THR L 37 TYR L 44 1 8 HELIX 2 2 GLN L 49 SER L 52 5 4 HELIX 3 3 GLU L 94 GLY L 97 5 4 HELIX 4 4 ALA H 56 PHE H 59 5 4 HELIX 5 5 ARG H 126 ARG H 129B 1 6 HELIX 6 6 LEU H 129D PHE H 129F 5 3 HELIX 7 7 THR H 165 GLN H 170A 1 7 HELIX 8 8 VAL H 231 GLN H 233 5 3 HELIX 9 9 ILE H 235 ARG H 243 1 9 HELIX 10 10 THR T 60 LYS T 65 1 6 HELIX 11 11 PRO T 102 GLU T 105 1 4 HELIX 12 12 LEU T 143 ASP T 150 1 8 HELIX 13 13 ASP I 3 LEU I 6 5 4 HELIX 14 14 ALA I 48 ARG I 53 1 6 SHEET 1 A 2 SER L 60 GLN L 64 0 SHEET 2 A 2 SER L 67 PHE L 71 -1 N PHE L 71 O SER L 60 SHEET 1 B 2 TYR L 101 SER L 103 0 SHEET 2 B 2 SER L 111 ARG L 113 -1 N ARG L 113 O TYR L 101 SHEET 1 C 2 TYR L 118 LEU L 120 0 SHEET 2 C 2 CYS L 127 PRO L 129 -1 N THR L 128 O SER L 119 SHEET 1 D 4 GLN H 81 ARG H 84 0 SHEET 2 D 4 LEU H 64 LEU H 68 -1 N LEU H 68 O GLN H 81 SHEET 3 D 4 GLN H 30 VAL H 35 -1 N LEU H 34 O ILE H 65 SHEET 4 D 4 ALA H 39 THR H 45 -1 N GLY H 44 O VAL H 31 SHEET 1 E 4 TRP H 51 SER H 54 0 SHEET 2 E 4 ALA H 104 LEU H 108 -1 N LEU H 106 O VAL H 52 SHEET 3 E 4 VAL H 85 PRO H 91 -1 N ILE H 89 O LEU H 105 SHEET 4 E 4 LEU H 251 ALA H 254 1 N LEU H 252 O VAL H 88 SHEET 1 F 2 PHE H 135 GLY H 140 0 SHEET 2 F 2 MET H 156 PRO H 161 -1 N VAL H 160 O SER H 136 SHEET 1 G 4 MET H 180 ALA H 183 0 SHEET 2 G 4 GLY H 226 ARG H 230 -1 N TYR H 228 O PHE H 181 SHEET 3 G 4 THR H 206 TRP H 215 -1 N TRP H 215 O VAL H 227 SHEET 4 G 4 PRO H 198 TYR H 203 -1 N TYR H 203 O THR H 206 SHEET 1 H 3 THR T 13 THR T 17 0 SHEET 2 H 3 LYS T 20 GLU T 24 -1 N GLU T 24 O THR T 13 SHEET 3 H 3 GLU T 56 ASP T 58 -1 N CYS T 57 O LEU T 23 SHEET 1 I 4 LYS T 46 LYS T 48 0 SHEET 2 I 4 GLN T 32 THR T 40 -1 N ILE T 38 O LYS T 46 SHEET 3 I 4 TYR T 71 PRO T 79 -1 N TYR T 78 O VAL T 33 SHEET 4 I 4 LEU T 93 ASN T 96 -1 N GLU T 95 O VAL T 75 SHEET 1 J 3 GLU T 174 ILE T 177 0 SHEET 2 J 3 VAL T 123 VAL T 127 -1 N VAL T 125 O PHE T 175 SHEET 3 J 3 ILE T 113 GLU T 117 -1 N GLU T 117 O ASN T 124 SHEET 1 K 3 CYS T 186 VAL T 192 0 SHEET 2 K 3 ILE T 152 TRP T 158 -1 N TRP T 158 O CYS T 186 SHEET 3 K 3 LYS T 166 THR T 170 -1 N THR T 170 O TYR T 153 SHEET 1 L 2 HIS I 18 ASN I 24 0 SHEET 2 L 2 LEU I 29 TYR I 35 -1 N TYR I 35 O HIS I 18 SSBOND 1 CYS L 50 CYS L 61 1555 1555 2.01 SSBOND 2 CYS L 55 CYS L 70 1555 1555 2.09 SSBOND 3 CYS L 72 CYS L 81 1555 1555 2.17 SSBOND 4 CYS L 91 CYS L 102 1555 1555 2.05 SSBOND 5 CYS L 98 CYS L 112 1555 1555 2.01 SSBOND 6 CYS L 114 CYS L 127 1555 1555 2.01 SSBOND 7 CYS L 135 CYS H 122 1555 1555 1.91 SSBOND 8 CYS H 22 CYS H 27 1555 1555 2.01 SSBOND 9 CYS H 42 CYS H 58 1555 1555 2.07 SSBOND 10 CYS H 168 CYS H 182 1555 1555 2.05 SSBOND 11 CYS H 191 CYS H 220 1555 1555 2.11 SSBOND 12 CYS T 49 CYS T 57 1555 1555 2.14 SSBOND 13 CYS T 186 CYS T 209 1555 1555 2.08 SSBOND 14 CYS I 5 CYS I 55 1555 1555 2.01 SSBOND 15 CYS I 14 CYS I 38 1555 1555 2.03 LINK OG SER L 52 C1 GLC L 600 1555 1555 1.37 LINK OG SER L 60 C1 FUC L 601 1555 1555 1.42 LINK OD2 ASP L 46 CA CA L 602 1555 1555 2.93 LINK O GLY L 47 CA CA L 602 1555 1555 2.20 LINK OE1 GLN L 49 CA CA L 602 1555 1555 2.48 LINK OD2 ASP L 63 CA CA L 602 1555 1555 2.22 LINK OD1 ASP L 63 CA CA L 602 1555 1555 2.76 LINK O GLN L 64 CA CA L 602 1555 1555 2.55 LINK CA CA L 602 O HOH L 669 1555 1555 1.97 LINK OE1 GLU H 70 CA CA H 258 1555 1555 2.52 LINK O ASP H 72 CA CA H 258 1555 1555 2.43 LINK O GLU H 75 CA CA H 258 1555 1555 2.11 LINK OE2 GLU H 80 CA CA H 258 1555 1555 2.22 LINK CA CA H 258 O HOH H 281 1555 1555 2.38 LINK CA CA H 258 O HOH H 295 1555 1555 3.02 CISPEP 1 PHE H 256 PRO H 257 0 0.79 CISPEP 2 GLU T 26 PRO T 27 0 0.73 CRYST1 63.490 190.000 175.300 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015750 0.000000 0.000000 0.00000 SCALE2 0.000000 0.005263 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005704 0.00000