data_1FAV # _entry.id 1FAV # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.381 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FAV pdb_00001fav 10.2210/pdb1fav/pdb RCSB RCSB011442 ? ? WWPDB D_1000011442 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FAV _pdbx_database_status.recvd_initial_deposition_date 2000-07-13 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Zhou, G.' 1 'Ferrer, M.' 2 'Chopra, R.' 3 'Strassmaier, T.' 4 'Weissenhorn, W.' 5 'Skehel, J.J.' 6 'Oprian, D.' 7 'Schreiber, S.L.' 8 'Harrison, S.C.' 9 'Wiley, D.C.' 10 # _citation.id primary _citation.title 'The structure of an HIV-1 specific cell entry inhibitor in complex with the HIV-1 gp41 trimeric core.' _citation.journal_abbrev Bioorg.Med.Chem. _citation.journal_volume 8 _citation.page_first 2219 _citation.page_last 2227 _citation.year 2000 _citation.journal_id_ASTM BMECEP _citation.country UK _citation.journal_id_ISSN 0968-0896 _citation.journal_id_CSD 1200 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11026535 _citation.pdbx_database_id_DOI '10.1016/S0968-0896(00)00155-3' # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Zhou, G.' 1 ? primary 'Ferrer, M.' 2 ? primary 'Chopra, R.' 3 ? primary 'Kapoor, T.M.' 4 ? primary 'Strassmaier, T.' 5 ? primary 'Weissenhorn, W.' 6 ? primary 'Skehel, J.J.' 7 ? primary 'Oprian, D.' 8 ? primary 'Schreiber, S.L.' 9 ? primary 'Harrison, S.C.' 10 ? primary 'Wiley, D.C.' 11 ? # _cell.entry_id 1FAV _cell.length_a 35.819 _cell.length_b 35.819 _cell.length_c 164.691 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1FAV _symmetry.space_group_name_H-M 'P 3 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'HIV-1 ENVELOPE PROTEIN CHIMERA' 9268.784 1 ? 'L2I, V6I, L9I, N13I, L16I, V20I, L23I, V27I' ? 'CHIMERA CONSISTS OF A FRAGMENT OF GCN4 ZIPPER CLONED N-TERMINAL TO A FRAGMENT OF GP41' 2 polymer syn 'PROTEIN (TRANSMEMBRANE GLYCOPROTEIN)' 4049.338 1 ? ? 'OUTER PEPTIDE OF GP41 OF HIV-1' ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no QIEDKIEEILSKIYHIENEIARIKKLIGEARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ QIEDKIEEILSKIYHIENEIARIKKLIGEARQLLSGIVQQQNNLLRAIEAQQHLLQLTVWGIKQLQARILAVERYLKDQ A ? 2 'polypeptide(L)' no yes '(3PA)(GGL)(4BA)NNYTSLIHSLIEESQNQQEKNEQELLELDK' XEXNNYTSLIHSLIEESQNQQEKNEQELLELDK C ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLN n 1 2 ILE n 1 3 GLU n 1 4 ASP n 1 5 LYS n 1 6 ILE n 1 7 GLU n 1 8 GLU n 1 9 ILE n 1 10 LEU n 1 11 SER n 1 12 LYS n 1 13 ILE n 1 14 TYR n 1 15 HIS n 1 16 ILE n 1 17 GLU n 1 18 ASN n 1 19 GLU n 1 20 ILE n 1 21 ALA n 1 22 ARG n 1 23 ILE n 1 24 LYS n 1 25 LYS n 1 26 LEU n 1 27 ILE n 1 28 GLY n 1 29 GLU n 1 30 ALA n 1 31 ARG n 1 32 GLN n 1 33 LEU n 1 34 LEU n 1 35 SER n 1 36 GLY n 1 37 ILE n 1 38 VAL n 1 39 GLN n 1 40 GLN n 1 41 GLN n 1 42 ASN n 1 43 ASN n 1 44 LEU n 1 45 LEU n 1 46 ARG n 1 47 ALA n 1 48 ILE n 1 49 GLU n 1 50 ALA n 1 51 GLN n 1 52 GLN n 1 53 HIS n 1 54 LEU n 1 55 LEU n 1 56 GLN n 1 57 LEU n 1 58 THR n 1 59 VAL n 1 60 TRP n 1 61 GLY n 1 62 ILE n 1 63 LYS n 1 64 GLN n 1 65 LEU n 1 66 GLN n 1 67 ALA n 1 68 ARG n 1 69 ILE n 1 70 LEU n 1 71 ALA n 1 72 VAL n 1 73 GLU n 1 74 ARG n 1 75 TYR n 1 76 LEU n 1 77 LYS n 1 78 ASP n 1 79 GLN n 2 1 3PA n 2 2 GGL n 2 3 4BA n 2 4 ASN n 2 5 ASN n 2 6 TYR n 2 7 THR n 2 8 SER n 2 9 LEU n 2 10 ILE n 2 11 HIS n 2 12 SER n 2 13 LEU n 2 14 ILE n 2 15 GLU n 2 16 GLU n 2 17 SER n 2 18 GLN n 2 19 ASN n 2 20 GLN n 2 21 GLN n 2 22 GLU n 2 23 LYS n 2 24 ASN n 2 25 GLU n 2 26 GLN n 2 27 GLU n 2 28 LEU n 2 29 LEU n 2 30 GLU n 2 31 LEU n 2 32 ASP n 2 33 LYS n # loop_ _entity_src_gen.entity_id _entity_src_gen.pdbx_src_id _entity_src_gen.pdbx_alt_source_flag _entity_src_gen.pdbx_seq_type _entity_src_gen.pdbx_beg_seq_num _entity_src_gen.pdbx_end_seq_num _entity_src_gen.gene_src_common_name _entity_src_gen.gene_src_genus _entity_src_gen.pdbx_gene_src_gene _entity_src_gen.gene_src_species _entity_src_gen.gene_src_strain _entity_src_gen.gene_src_tissue _entity_src_gen.gene_src_tissue_fraction _entity_src_gen.gene_src_details _entity_src_gen.pdbx_gene_src_fragment _entity_src_gen.pdbx_gene_src_scientific_name _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id _entity_src_gen.pdbx_gene_src_variant _entity_src_gen.pdbx_gene_src_cell_line _entity_src_gen.pdbx_gene_src_atcc _entity_src_gen.pdbx_gene_src_organ _entity_src_gen.pdbx_gene_src_organelle _entity_src_gen.pdbx_gene_src_cell _entity_src_gen.pdbx_gene_src_cellular_location _entity_src_gen.host_org_common_name _entity_src_gen.pdbx_host_org_scientific_name _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id _entity_src_gen.host_org_genus _entity_src_gen.pdbx_host_org_gene _entity_src_gen.pdbx_host_org_organ _entity_src_gen.host_org_species _entity_src_gen.pdbx_host_org_tissue _entity_src_gen.pdbx_host_org_tissue_fraction _entity_src_gen.pdbx_host_org_strain _entity_src_gen.pdbx_host_org_variant _entity_src_gen.pdbx_host_org_cell_line _entity_src_gen.pdbx_host_org_atcc _entity_src_gen.pdbx_host_org_culture_collection _entity_src_gen.pdbx_host_org_cell _entity_src_gen.pdbx_host_org_organelle _entity_src_gen.pdbx_host_org_cellular_location _entity_src_gen.pdbx_host_org_vector_type _entity_src_gen.pdbx_host_org_vector _entity_src_gen.host_org_details _entity_src_gen.expression_system_id _entity_src_gen.plasmid_name _entity_src_gen.plasmid_details _entity_src_gen.pdbx_description 1 2 sample ? 30 79 ? Lentivirus ? ? ? ? ? ? ? 'Human immunodeficiency virus 1' 11676 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? PRSET ? ? 1 1 sample ? 1 29 ;Baker's yeast ; ? GCN4,AAS3,ARG9,YEL009C ? ? ? ? ? ? 'Saccharomyces cerevisiae (strain ATCC 204508 / S288c)' 559292 ? ? ? ? ? ? ? ? 'Escherichia coli' 562 Escherichia ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? ? PRSET ? ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific ? _pdbx_entity_src_syn.organism_common_name ? _pdbx_entity_src_syn.ncbi_taxonomy_id ? _pdbx_entity_src_syn.details 'The peptide was chemically synthesized. The sequence of the peptide is naturally found in HIV-1.' # loop_ _struct_ref.id _struct_ref.db_code _struct_ref.db_name _struct_ref.entity_id _struct_ref.pdbx_db_accession _struct_ref.pdbx_align_begin _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_db_isoform 1 GCN4_YEAST UNP 1 P03069 1 QLEDKVEELLSKNYHLENEVARLKKLVGE ? 2 ENV_HV1BR UNP 1 P03377 125 NNYTSLIHSLIEESQNQQEKNEQELLELDK ? 3 ENV_HV1BR UNP 2 P03377 125 NNYTSLIHSLIEESQNQQEKNEQELLELDK ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FAV A 1 ? 29 ? P03069 252 ? 280 ? 1 29 2 2 1FAV A 30 ? 79 ? P03377 546 ? 595 ? 30 79 3 3 1FAV C 4 ? 33 ? P03377 641 ? 670 ? 125 154 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 1FAV ILE A 2 ? UNP P03069 LEU 253 'engineered mutation' 2 1 1 1FAV ILE A 6 ? UNP P03069 VAL 257 'engineered mutation' 6 2 1 1FAV ILE A 9 ? UNP P03069 LEU 260 'engineered mutation' 9 3 1 1FAV ILE A 13 ? UNP P03069 ASN 264 'engineered mutation' 13 4 1 1FAV ILE A 16 ? UNP P03069 LEU 267 'engineered mutation' 16 5 1 1FAV ILE A 20 ? UNP P03069 VAL 271 'engineered mutation' 20 6 1 1FAV ILE A 23 ? UNP P03069 LEU 274 'engineered mutation' 23 7 1 1FAV ILE A 27 ? UNP P03069 VAL 278 'engineered mutation' 27 8 3 1FAV 3PA C 1 ? UNP P03377 ? ? conflict 122 9 3 1FAV GGL C 2 ? UNP P03377 ? ? conflict 123 10 3 1FAV 4BA C 3 ? UNP P03377 ? ? conflict 124 11 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 3PA non-polymer . '3-CYCLOPENTYL-PROPIONIC ACID' ? 'C8 H14 O2' 142.196 4BA non-polymer . '4-[(2-CARBOXY-ETHYLAMINO)-METHYL]-BENZOIC ACID' ? 'C11 H13 N O4' 223.225 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GGL 'L-gamma-peptide, C-delta linking' . 'GAMMA-L-GLUTAMIC ACID' 'L-GLUTAMIC ACID' 'C5 H9 N O4' 147.129 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1FAV _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 46.29 _exptl_crystal.density_Matthews 2.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 6.9 _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '25mM PIPES, 0.25M MgAc, 2.5% isopropanol, 10mM Hepes, 37.5mM NaCl, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-09-14 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type 'ELLIOTT GX-13' _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FAV _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 15.0 _reflns.d_resolution_high 3.0 _reflns.number_obs 2574 _reflns.number_all 2806 _reflns.percent_possible_obs 88 _reflns.pdbx_Rmerge_I_obs 0.0720000 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 1FAV _refine.ls_number_reflns_obs 2574 _refine.ls_number_reflns_all 2806 _refine.pdbx_ls_sigma_I 2.0 _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 15.0 _refine.ls_d_res_high 3.0 _refine.ls_percent_reflns_obs 88 _refine.ls_R_factor_obs 0.2400000 _refine.ls_R_factor_all 0.2400000 _refine.ls_R_factor_R_work 0.2400000 _refine.ls_R_factor_R_free 0.2950000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 398 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ;Residue 125 chain C was modelled based on residues 124 and 126. The occupancy of this residue is 0.00. ; _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details random _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 888 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 0 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 888 _refine_hist.d_res_high 3.0 _refine_hist.d_res_low 15.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.01 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.6 ? ? ? 'X-RAY DIFFRACTION' ? # _struct.entry_id 1FAV _struct.title 'THE STRUCTURE OF AN HIV-1 SPECIFIC CELL ENTRY INHIBITOR IN COMPLEX WITH THE HIV-1 GP41 TRIMERIC CORE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FAV _struct_keywords.pdbx_keywords 'VIRAL PROTEIN' _struct_keywords.text 'HIV-1, gp41, inhibitor, Viral protein' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASP A 4 ? GLN A 79 ? ASP A 4 GLN A 79 1 ? 76 HELX_P HELX_P2 2 ASN B 5 ? GLU B 30 ? ASN C 126 GLU C 151 1 ? 26 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? B 3PA 1 C8A A ? ? 1_555 B GGL 2 N A ? C 3PA 122 C GGL 123 1_555 ? ? ? ? ? ? ? 1.353 ? ? covale2 covale both ? B 3PA 1 C8A B ? ? 1_555 B GGL 2 N B ? C 3PA 122 C GGL 123 1_555 ? ? ? ? ? ? ? 1.343 ? ? covale3 covale both ? B GGL 2 CD A ? ? 1_555 B 4BA 3 N A ? C GGL 123 C 4BA 124 1_555 ? ? ? ? ? ? ? 1.330 ? ? covale4 covale both ? B GGL 2 CD B ? ? 1_555 B 4BA 3 N B ? C GGL 123 C 4BA 124 1_555 ? ? ? ? ? ? ? 1.303 ? ? covale5 covale both ? B 4BA 3 C B ? ? 1_555 B ASN 4 N ? ? C 4BA 124 C ASN 125 1_555 ? ? ? ? ? ? ? 1.342 ? ? covale6 covale both ? B 4BA 3 C A ? ? 1_555 B ASN 4 N ? ? C 4BA 124 C ASN 125 1_555 ? ? ? ? ? ? ? 1.320 ? ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1FAV _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1FAV _atom_sites.fract_transf_matrix[1][1] 0.027918 _atom_sites.fract_transf_matrix[1][2] 0.016119 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.032237 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006072 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLN 1 1 ? ? ? A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 GLU 3 3 3 GLU GLU A . n A 1 4 ASP 4 4 4 ASP ASP A . n A 1 5 LYS 5 5 5 LYS LYS A . n A 1 6 ILE 6 6 6 ILE ILE A . n A 1 7 GLU 7 7 7 GLU GLU A . n A 1 8 GLU 8 8 8 GLU GLU A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 LEU 10 10 10 LEU LEU A . n A 1 11 SER 11 11 11 SER SER A . n A 1 12 LYS 12 12 12 LYS LYS A . n A 1 13 ILE 13 13 13 ILE ILE A . n A 1 14 TYR 14 14 14 TYR TYR A . n A 1 15 HIS 15 15 15 HIS HIS A . n A 1 16 ILE 16 16 16 ILE ILE A . n A 1 17 GLU 17 17 17 GLU GLU A . n A 1 18 ASN 18 18 18 ASN ASN A . n A 1 19 GLU 19 19 19 GLU GLU A . n A 1 20 ILE 20 20 20 ILE ILE A . n A 1 21 ALA 21 21 21 ALA ALA A . n A 1 22 ARG 22 22 22 ARG ARG A . n A 1 23 ILE 23 23 23 ILE ILE A . n A 1 24 LYS 24 24 24 LYS LYS A . n A 1 25 LYS 25 25 25 LYS LYS A . n A 1 26 LEU 26 26 26 LEU LEU A . n A 1 27 ILE 27 27 27 ILE ILE A . n A 1 28 GLY 28 28 28 GLY GLY A . n A 1 29 GLU 29 29 29 GLU GLU A . n A 1 30 ALA 30 30 30 ALA ALA A . n A 1 31 ARG 31 31 31 ARG ARG A . n A 1 32 GLN 32 32 32 GLN GLN A . n A 1 33 LEU 33 33 33 LEU LEU A . n A 1 34 LEU 34 34 34 LEU LEU A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 GLY 36 36 36 GLY GLY A . n A 1 37 ILE 37 37 37 ILE ILE A . n A 1 38 VAL 38 38 38 VAL VAL A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 GLN 40 40 40 GLN GLN A . n A 1 41 GLN 41 41 41 GLN GLN A . n A 1 42 ASN 42 42 42 ASN ASN A . n A 1 43 ASN 43 43 43 ASN ASN A . n A 1 44 LEU 44 44 44 LEU LEU A . n A 1 45 LEU 45 45 45 LEU LEU A . n A 1 46 ARG 46 46 46 ARG ARG A . n A 1 47 ALA 47 47 47 ALA ALA A . n A 1 48 ILE 48 48 48 ILE ILE A . n A 1 49 GLU 49 49 49 GLU GLU A . n A 1 50 ALA 50 50 50 ALA ALA A . n A 1 51 GLN 51 51 51 GLN GLN A . n A 1 52 GLN 52 52 52 GLN GLN A . n A 1 53 HIS 53 53 53 HIS HIS A . n A 1 54 LEU 54 54 54 LEU LEU A . n A 1 55 LEU 55 55 55 LEU LEU A . n A 1 56 GLN 56 56 56 GLN GLN A . n A 1 57 LEU 57 57 57 LEU LEU A . n A 1 58 THR 58 58 58 THR THR A . n A 1 59 VAL 59 59 59 VAL VAL A . n A 1 60 TRP 60 60 60 TRP TRP A . n A 1 61 GLY 61 61 61 GLY GLY A . n A 1 62 ILE 62 62 62 ILE ILE A . n A 1 63 LYS 63 63 63 LYS LYS A . n A 1 64 GLN 64 64 64 GLN GLN A . n A 1 65 LEU 65 65 65 LEU LEU A . n A 1 66 GLN 66 66 66 GLN GLN A . n A 1 67 ALA 67 67 67 ALA ALA A . n A 1 68 ARG 68 68 68 ARG ARG A . n A 1 69 ILE 69 69 69 ILE ILE A . n A 1 70 LEU 70 70 70 LEU LEU A . n A 1 71 ALA 71 71 71 ALA ALA A . n A 1 72 VAL 72 72 72 VAL VAL A . n A 1 73 GLU 73 73 73 GLU GLU A . n A 1 74 ARG 74 74 74 ARG ARG A . n A 1 75 TYR 75 75 75 TYR TYR A . n A 1 76 LEU 76 76 76 LEU LEU A . n A 1 77 LYS 77 77 77 LYS LYS A . n A 1 78 ASP 78 78 78 ASP ASP A . n A 1 79 GLN 79 79 79 GLN GLN A . n B 2 1 3PA 1 122 122 3PA 3PA C . n B 2 2 GGL 2 123 123 GGL GGL C . n B 2 3 4BA 3 124 124 4BA 4BA C . n B 2 4 ASN 4 125 125 ASN ASN C . n B 2 5 ASN 5 126 126 ASN ASN C . n B 2 6 TYR 6 127 127 TYR TYR C . n B 2 7 THR 7 128 128 THR THR C . n B 2 8 SER 8 129 129 SER SER C . n B 2 9 LEU 9 130 130 LEU LEU C . n B 2 10 ILE 10 131 131 ILE ILE C . n B 2 11 HIS 11 132 132 HIS HIS C . n B 2 12 SER 12 133 133 SER SER C . n B 2 13 LEU 13 134 134 LEU LEU C . n B 2 14 ILE 14 135 135 ILE ILE C . n B 2 15 GLU 15 136 136 GLU GLU C . n B 2 16 GLU 16 137 137 GLU GLU C . n B 2 17 SER 17 138 138 SER SER C . n B 2 18 GLN 18 139 139 GLN GLN C . n B 2 19 ASN 19 140 140 ASN ASN C . n B 2 20 GLN 20 141 141 GLN GLN C . n B 2 21 GLN 21 142 142 GLN GLN C . n B 2 22 GLU 22 143 143 GLU GLU C . n B 2 23 LYS 23 144 144 LYS LYS C . n B 2 24 ASN 24 145 145 ASN ASN C . n B 2 25 GLU 25 146 146 GLU GLU C . n B 2 26 GLN 26 147 147 GLN GLN C . n B 2 27 GLU 27 148 148 GLU GLU C . n B 2 28 LEU 28 149 149 LEU LEU C . n B 2 29 LEU 29 150 150 LEU LEU C . n B 2 30 GLU 30 151 151 GLU GLU C . n B 2 31 LEU 31 152 152 LEU LEU C . n B 2 32 ASP 32 153 ? ? ? C . n B 2 33 LYS 33 154 ? ? ? C . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA,PQS _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 _pdbx_struct_assembly_gen.asym_id_list A,B # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 17320 ? 1 MORE -109 ? 1 'SSA (A^2)' 16880 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_655 -y+1,x-y,z -0.5000000000 -0.8660254038 0.0000000000 35.8190000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_665 -x+y+1,-x+1,z -0.5000000000 0.8660254038 0.0000000000 17.9095000000 -0.8660254038 -0.5000000000 0.0000000000 31.0201639382 0.0000000000 0.0000000000 1.0000000000 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-08-23 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-08-09 5 'Structure model' 1 4 2021-11-03 6 'Structure model' 2 0 2023-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Derived calculations' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' Advisory 5 4 'Structure model' 'Refinement description' 6 4 'Structure model' 'Source and taxonomy' 7 5 'Structure model' Advisory 8 5 'Structure model' 'Database references' 9 5 'Structure model' 'Derived calculations' 10 6 'Structure model' 'Atomic model' 11 6 'Structure model' 'Data collection' 12 6 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' entity_src_gen 2 4 'Structure model' pdbx_unobs_or_zero_occ_residues 3 4 'Structure model' software 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_unobs_or_zero_occ_residues 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_ref_seq_dif 8 6 'Structure model' atom_site 9 6 'Structure model' chem_comp_atom 10 6 'Structure model' chem_comp_bond 11 6 'Structure model' struct_conn # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_database_2.pdbx_DOI' 2 5 'Structure model' '_database_2.pdbx_database_accession' 3 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 4 5 'Structure model' '_struct_ref_seq_dif.details' 5 6 'Structure model' '_atom_site.auth_atom_id' 6 6 'Structure model' '_atom_site.label_atom_id' 7 6 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 8 6 'Structure model' '_struct_conn.ptnr2_label_atom_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement 0.9 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLU A 3 ? ? -62.95 -90.83 2 1 ALA A 30 ? ? -73.95 20.45 3 1 ASN C 125 ? ? -36.18 127.78 4 1 ASN C 125 ? ? -18.81 127.78 5 1 ASN C 126 ? ? -97.28 -95.73 6 1 GLU C 151 ? ? -73.04 49.37 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLU 3 ? CB ? A GLU 3 CB 2 1 Y 1 A GLU 3 ? CG ? A GLU 3 CG 3 1 Y 1 A GLU 3 ? CD ? A GLU 3 CD 4 1 Y 1 A GLU 3 ? OE1 ? A GLU 3 OE1 5 1 Y 1 A GLU 3 ? OE2 ? A GLU 3 OE2 6 1 Y 1 A GLU 7 ? CB ? A GLU 7 CB 7 1 Y 1 A GLU 7 ? CG ? A GLU 7 CG 8 1 Y 1 A GLU 7 ? CD ? A GLU 7 CD 9 1 Y 1 A GLU 7 ? OE1 ? A GLU 7 OE1 10 1 Y 1 A GLU 7 ? OE2 ? A GLU 7 OE2 11 1 Y 1 A ARG 22 ? CG ? A ARG 22 CG 12 1 Y 1 A ARG 22 ? CD ? A ARG 22 CD 13 1 Y 1 A ARG 22 ? NE ? A ARG 22 NE 14 1 Y 1 A ARG 22 ? CZ ? A ARG 22 CZ 15 1 Y 1 A ARG 22 ? NH1 ? A ARG 22 NH1 16 1 Y 1 A ARG 22 ? NH2 ? A ARG 22 NH2 17 1 Y 1 C ASN 125 ? CB ? B ASN 4 CB 18 1 Y 1 C ASN 125 ? CG ? B ASN 4 CG 19 1 Y 1 C ASN 125 ? OD1 ? B ASN 4 OD1 20 1 Y 1 C ASN 125 ? ND2 ? B ASN 4 ND2 21 1 Y 1 C LEU 150 ? CG ? B LEU 29 CG 22 1 Y 1 C LEU 150 ? CD1 ? B LEU 29 CD1 23 1 Y 1 C LEU 150 ? CD2 ? B LEU 29 CD2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLN 1 ? A GLN 1 2 1 Y 0 C ASN 125 ? B ASN 4 3 1 Y 0 C ASN 126 ? B ASN 5 4 1 Y 1 C ASP 153 ? B ASP 32 5 1 Y 1 C LYS 154 ? B LYS 33 # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 3PA C1A C N N 1 3PA C2A C N N 2 3PA C3A C N N 3 3PA C4A C N N 4 3PA C5A C N N 5 3PA C6A C N N 6 3PA C7A C N N 7 3PA C8A C N N 8 3PA O9A O N N 9 3PA O10 O N N 10 3PA H11 H N N 11 3PA H21 H N N 12 3PA H12 H N N 13 3PA H22 H N N 14 3PA HC3 H N N 15 3PA H14 H N N 16 3PA H24 H N N 17 3PA H15 H N N 18 3PA H25 H N N 19 3PA H16 H N N 20 3PA H26 H N N 21 3PA H17 H N N 22 3PA H27 H N N 23 3PA H10 H N N 24 4BA N N N N 25 4BA C5C C N N 26 4BA C6C C N N 27 4BA C7C C N N 28 4BA O8C O N N 29 4BA O9C O N N 30 4BA C1D C Y N 31 4BA C2D C Y N 32 4BA C3D C Y N 33 4BA C4D C Y N 34 4BA C5D C Y N 35 4BA C6D C Y N 36 4BA C7D C N N 37 4BA C C N N 38 4BA O O N N 39 4BA OXT O N N 40 4BA H H N N 41 4BA H15 H N N 42 4BA H25 H N N 43 4BA H16 H N N 44 4BA H26 H N N 45 4BA HO8 H N N 46 4BA HC2 H N N 47 4BA HC3 H N N 48 4BA HC5 H N N 49 4BA HC6 H N N 50 4BA H17 H N N 51 4BA H27 H N N 52 4BA HXT H N N 53 ALA N N N N 54 ALA CA C N S 55 ALA C C N N 56 ALA O O N N 57 ALA CB C N N 58 ALA OXT O N N 59 ALA H H N N 60 ALA H2 H N N 61 ALA HA H N N 62 ALA HB1 H N N 63 ALA HB2 H N N 64 ALA HB3 H N N 65 ALA HXT H N N 66 ARG N N N N 67 ARG CA C N S 68 ARG C C N N 69 ARG O O N N 70 ARG CB C N N 71 ARG CG C N N 72 ARG CD C N N 73 ARG NE N N N 74 ARG CZ C N N 75 ARG NH1 N N N 76 ARG NH2 N N N 77 ARG OXT O N N 78 ARG H H N N 79 ARG H2 H N N 80 ARG HA H N N 81 ARG HB2 H N N 82 ARG HB3 H N N 83 ARG HG2 H N N 84 ARG HG3 H N N 85 ARG HD2 H N N 86 ARG HD3 H N N 87 ARG HE H N N 88 ARG HH11 H N N 89 ARG HH12 H N N 90 ARG HH21 H N N 91 ARG HH22 H N N 92 ARG HXT H N N 93 ASN N N N N 94 ASN CA C N S 95 ASN C C N N 96 ASN O O N N 97 ASN CB C N N 98 ASN CG C N N 99 ASN OD1 O N N 100 ASN ND2 N N N 101 ASN OXT O N N 102 ASN H H N N 103 ASN H2 H N N 104 ASN HA H N N 105 ASN HB2 H N N 106 ASN HB3 H N N 107 ASN HD21 H N N 108 ASN HD22 H N N 109 ASN HXT H N N 110 ASP N N N N 111 ASP CA C N S 112 ASP C C N N 113 ASP O O N N 114 ASP CB C N N 115 ASP CG C N N 116 ASP OD1 O N N 117 ASP OD2 O N N 118 ASP OXT O N N 119 ASP H H N N 120 ASP H2 H N N 121 ASP HA H N N 122 ASP HB2 H N N 123 ASP HB3 H N N 124 ASP HD2 H N N 125 ASP HXT H N N 126 GGL N N N N 127 GGL CA C N S 128 GGL C C N N 129 GGL O O N N 130 GGL CB C N N 131 GGL CG C N N 132 GGL CD C N N 133 GGL OE1 O N N 134 GGL OE2 O N N 135 GGL OXT O N N 136 GGL H H N N 137 GGL H2 H N N 138 GGL HA H N N 139 GGL HB2 H N N 140 GGL HB3 H N N 141 GGL HG2 H N N 142 GGL HG3 H N N 143 GGL HE2 H N N 144 GGL HXT H N N 145 GLN N N N N 146 GLN CA C N S 147 GLN C C N N 148 GLN O O N N 149 GLN CB C N N 150 GLN CG C N N 151 GLN CD C N N 152 GLN OE1 O N N 153 GLN NE2 N N N 154 GLN OXT O N N 155 GLN H H N N 156 GLN H2 H N N 157 GLN HA H N N 158 GLN HB2 H N N 159 GLN HB3 H N N 160 GLN HG2 H N N 161 GLN HG3 H N N 162 GLN HE21 H N N 163 GLN HE22 H N N 164 GLN HXT H N N 165 GLU N N N N 166 GLU CA C N S 167 GLU C C N N 168 GLU O O N N 169 GLU CB C N N 170 GLU CG C N N 171 GLU CD C N N 172 GLU OE1 O N N 173 GLU OE2 O N N 174 GLU OXT O N N 175 GLU H H N N 176 GLU H2 H N N 177 GLU HA H N N 178 GLU HB2 H N N 179 GLU HB3 H N N 180 GLU HG2 H N N 181 GLU HG3 H N N 182 GLU HE2 H N N 183 GLU HXT H N N 184 GLY N N N N 185 GLY CA C N N 186 GLY C C N N 187 GLY O O N N 188 GLY OXT O N N 189 GLY H H N N 190 GLY H2 H N N 191 GLY HA2 H N N 192 GLY HA3 H N N 193 GLY HXT H N N 194 HIS N N N N 195 HIS CA C N S 196 HIS C C N N 197 HIS O O N N 198 HIS CB C N N 199 HIS CG C Y N 200 HIS ND1 N Y N 201 HIS CD2 C Y N 202 HIS CE1 C Y N 203 HIS NE2 N Y N 204 HIS OXT O N N 205 HIS H H N N 206 HIS H2 H N N 207 HIS HA H N N 208 HIS HB2 H N N 209 HIS HB3 H N N 210 HIS HD1 H N N 211 HIS HD2 H N N 212 HIS HE1 H N N 213 HIS HE2 H N N 214 HIS HXT H N N 215 ILE N N N N 216 ILE CA C N S 217 ILE C C N N 218 ILE O O N N 219 ILE CB C N S 220 ILE CG1 C N N 221 ILE CG2 C N N 222 ILE CD1 C N N 223 ILE OXT O N N 224 ILE H H N N 225 ILE H2 H N N 226 ILE HA H N N 227 ILE HB H N N 228 ILE HG12 H N N 229 ILE HG13 H N N 230 ILE HG21 H N N 231 ILE HG22 H N N 232 ILE HG23 H N N 233 ILE HD11 H N N 234 ILE HD12 H N N 235 ILE HD13 H N N 236 ILE HXT H N N 237 LEU N N N N 238 LEU CA C N S 239 LEU C C N N 240 LEU O O N N 241 LEU CB C N N 242 LEU CG C N N 243 LEU CD1 C N N 244 LEU CD2 C N N 245 LEU OXT O N N 246 LEU H H N N 247 LEU H2 H N N 248 LEU HA H N N 249 LEU HB2 H N N 250 LEU HB3 H N N 251 LEU HG H N N 252 LEU HD11 H N N 253 LEU HD12 H N N 254 LEU HD13 H N N 255 LEU HD21 H N N 256 LEU HD22 H N N 257 LEU HD23 H N N 258 LEU HXT H N N 259 LYS N N N N 260 LYS CA C N S 261 LYS C C N N 262 LYS O O N N 263 LYS CB C N N 264 LYS CG C N N 265 LYS CD C N N 266 LYS CE C N N 267 LYS NZ N N N 268 LYS OXT O N N 269 LYS H H N N 270 LYS H2 H N N 271 LYS HA H N N 272 LYS HB2 H N N 273 LYS HB3 H N N 274 LYS HG2 H N N 275 LYS HG3 H N N 276 LYS HD2 H N N 277 LYS HD3 H N N 278 LYS HE2 H N N 279 LYS HE3 H N N 280 LYS HZ1 H N N 281 LYS HZ2 H N N 282 LYS HZ3 H N N 283 LYS HXT H N N 284 SER N N N N 285 SER CA C N S 286 SER C C N N 287 SER O O N N 288 SER CB C N N 289 SER OG O N N 290 SER OXT O N N 291 SER H H N N 292 SER H2 H N N 293 SER HA H N N 294 SER HB2 H N N 295 SER HB3 H N N 296 SER HG H N N 297 SER HXT H N N 298 THR N N N N 299 THR CA C N S 300 THR C C N N 301 THR O O N N 302 THR CB C N R 303 THR OG1 O N N 304 THR CG2 C N N 305 THR OXT O N N 306 THR H H N N 307 THR H2 H N N 308 THR HA H N N 309 THR HB H N N 310 THR HG1 H N N 311 THR HG21 H N N 312 THR HG22 H N N 313 THR HG23 H N N 314 THR HXT H N N 315 TRP N N N N 316 TRP CA C N S 317 TRP C C N N 318 TRP O O N N 319 TRP CB C N N 320 TRP CG C Y N 321 TRP CD1 C Y N 322 TRP CD2 C Y N 323 TRP NE1 N Y N 324 TRP CE2 C Y N 325 TRP CE3 C Y N 326 TRP CZ2 C Y N 327 TRP CZ3 C Y N 328 TRP CH2 C Y N 329 TRP OXT O N N 330 TRP H H N N 331 TRP H2 H N N 332 TRP HA H N N 333 TRP HB2 H N N 334 TRP HB3 H N N 335 TRP HD1 H N N 336 TRP HE1 H N N 337 TRP HE3 H N N 338 TRP HZ2 H N N 339 TRP HZ3 H N N 340 TRP HH2 H N N 341 TRP HXT H N N 342 TYR N N N N 343 TYR CA C N S 344 TYR C C N N 345 TYR O O N N 346 TYR CB C N N 347 TYR CG C Y N 348 TYR CD1 C Y N 349 TYR CD2 C Y N 350 TYR CE1 C Y N 351 TYR CE2 C Y N 352 TYR CZ C Y N 353 TYR OH O N N 354 TYR OXT O N N 355 TYR H H N N 356 TYR H2 H N N 357 TYR HA H N N 358 TYR HB2 H N N 359 TYR HB3 H N N 360 TYR HD1 H N N 361 TYR HD2 H N N 362 TYR HE1 H N N 363 TYR HE2 H N N 364 TYR HH H N N 365 TYR HXT H N N 366 VAL N N N N 367 VAL CA C N S 368 VAL C C N N 369 VAL O O N N 370 VAL CB C N N 371 VAL CG1 C N N 372 VAL CG2 C N N 373 VAL OXT O N N 374 VAL H H N N 375 VAL H2 H N N 376 VAL HA H N N 377 VAL HB H N N 378 VAL HG11 H N N 379 VAL HG12 H N N 380 VAL HG13 H N N 381 VAL HG21 H N N 382 VAL HG22 H N N 383 VAL HG23 H N N 384 VAL HXT H N N 385 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 3PA C1A C2A sing N N 1 3PA C1A C5A sing N N 2 3PA C1A H11 sing N N 3 3PA C1A H21 sing N N 4 3PA C2A C3A sing N N 5 3PA C2A H12 sing N N 6 3PA C2A H22 sing N N 7 3PA C3A C4A sing N N 8 3PA C3A C6A sing N N 9 3PA C3A HC3 sing N N 10 3PA C4A C5A sing N N 11 3PA C4A H14 sing N N 12 3PA C4A H24 sing N N 13 3PA C5A H15 sing N N 14 3PA C5A H25 sing N N 15 3PA C6A C7A sing N N 16 3PA C6A H16 sing N N 17 3PA C6A H26 sing N N 18 3PA C7A C8A sing N N 19 3PA C7A H17 sing N N 20 3PA C7A H27 sing N N 21 3PA C8A O9A doub N N 22 3PA C8A O10 sing N N 23 3PA O10 H10 sing N N 24 4BA N C5C sing N N 25 4BA N C7D sing N N 26 4BA N H sing N N 27 4BA C5C C6C sing N N 28 4BA C5C H15 sing N N 29 4BA C5C H25 sing N N 30 4BA C6C C7C sing N N 31 4BA C6C H16 sing N N 32 4BA C6C H26 sing N N 33 4BA C7C O8C sing N N 34 4BA C7C O9C doub N N 35 4BA O8C HO8 sing N N 36 4BA C1D C2D doub Y N 37 4BA C1D C6D sing Y N 38 4BA C1D C7D sing N N 39 4BA C2D C3D sing Y N 40 4BA C2D HC2 sing N N 41 4BA C3D C4D doub Y N 42 4BA C3D HC3 sing N N 43 4BA C4D C5D sing Y N 44 4BA C4D C sing N N 45 4BA C5D C6D doub Y N 46 4BA C5D HC5 sing N N 47 4BA C6D HC6 sing N N 48 4BA C7D H17 sing N N 49 4BA C7D H27 sing N N 50 4BA C O doub N N 51 4BA C OXT sing N N 52 4BA OXT HXT sing N N 53 ALA N CA sing N N 54 ALA N H sing N N 55 ALA N H2 sing N N 56 ALA CA C sing N N 57 ALA CA CB sing N N 58 ALA CA HA sing N N 59 ALA C O doub N N 60 ALA C OXT sing N N 61 ALA CB HB1 sing N N 62 ALA CB HB2 sing N N 63 ALA CB HB3 sing N N 64 ALA OXT HXT sing N N 65 ARG N CA sing N N 66 ARG N H sing N N 67 ARG N H2 sing N N 68 ARG CA C sing N N 69 ARG CA CB sing N N 70 ARG CA HA sing N N 71 ARG C O doub N N 72 ARG C OXT sing N N 73 ARG CB CG sing N N 74 ARG CB HB2 sing N N 75 ARG CB HB3 sing N N 76 ARG CG CD sing N N 77 ARG CG HG2 sing N N 78 ARG CG HG3 sing N N 79 ARG CD NE sing N N 80 ARG CD HD2 sing N N 81 ARG CD HD3 sing N N 82 ARG NE CZ sing N N 83 ARG NE HE sing N N 84 ARG CZ NH1 sing N N 85 ARG CZ NH2 doub N N 86 ARG NH1 HH11 sing N N 87 ARG NH1 HH12 sing N N 88 ARG NH2 HH21 sing N N 89 ARG NH2 HH22 sing N N 90 ARG OXT HXT sing N N 91 ASN N CA sing N N 92 ASN N H sing N N 93 ASN N H2 sing N N 94 ASN CA C sing N N 95 ASN CA CB sing N N 96 ASN CA HA sing N N 97 ASN C O doub N N 98 ASN C OXT sing N N 99 ASN CB CG sing N N 100 ASN CB HB2 sing N N 101 ASN CB HB3 sing N N 102 ASN CG OD1 doub N N 103 ASN CG ND2 sing N N 104 ASN ND2 HD21 sing N N 105 ASN ND2 HD22 sing N N 106 ASN OXT HXT sing N N 107 ASP N CA sing N N 108 ASP N H sing N N 109 ASP N H2 sing N N 110 ASP CA C sing N N 111 ASP CA CB sing N N 112 ASP CA HA sing N N 113 ASP C O doub N N 114 ASP C OXT sing N N 115 ASP CB CG sing N N 116 ASP CB HB2 sing N N 117 ASP CB HB3 sing N N 118 ASP CG OD1 doub N N 119 ASP CG OD2 sing N N 120 ASP OD2 HD2 sing N N 121 ASP OXT HXT sing N N 122 GGL N CA sing N N 123 GGL N H sing N N 124 GGL N H2 sing N N 125 GGL CA C sing N N 126 GGL CA CB sing N N 127 GGL CA HA sing N N 128 GGL C O doub N N 129 GGL C OXT sing N N 130 GGL CB CG sing N N 131 GGL CB HB2 sing N N 132 GGL CB HB3 sing N N 133 GGL CG CD sing N N 134 GGL CG HG2 sing N N 135 GGL CG HG3 sing N N 136 GGL CD OE1 doub N N 137 GGL CD OE2 sing N N 138 GGL OE2 HE2 sing N N 139 GGL OXT HXT sing N N 140 GLN N CA sing N N 141 GLN N H sing N N 142 GLN N H2 sing N N 143 GLN CA C sing N N 144 GLN CA CB sing N N 145 GLN CA HA sing N N 146 GLN C O doub N N 147 GLN C OXT sing N N 148 GLN CB CG sing N N 149 GLN CB HB2 sing N N 150 GLN CB HB3 sing N N 151 GLN CG CD sing N N 152 GLN CG HG2 sing N N 153 GLN CG HG3 sing N N 154 GLN CD OE1 doub N N 155 GLN CD NE2 sing N N 156 GLN NE2 HE21 sing N N 157 GLN NE2 HE22 sing N N 158 GLN OXT HXT sing N N 159 GLU N CA sing N N 160 GLU N H sing N N 161 GLU N H2 sing N N 162 GLU CA C sing N N 163 GLU CA CB sing N N 164 GLU CA HA sing N N 165 GLU C O doub N N 166 GLU C OXT sing N N 167 GLU CB CG sing N N 168 GLU CB HB2 sing N N 169 GLU CB HB3 sing N N 170 GLU CG CD sing N N 171 GLU CG HG2 sing N N 172 GLU CG HG3 sing N N 173 GLU CD OE1 doub N N 174 GLU CD OE2 sing N N 175 GLU OE2 HE2 sing N N 176 GLU OXT HXT sing N N 177 GLY N CA sing N N 178 GLY N H sing N N 179 GLY N H2 sing N N 180 GLY CA C sing N N 181 GLY CA HA2 sing N N 182 GLY CA HA3 sing N N 183 GLY C O doub N N 184 GLY C OXT sing N N 185 GLY OXT HXT sing N N 186 HIS N CA sing N N 187 HIS N H sing N N 188 HIS N H2 sing N N 189 HIS CA C sing N N 190 HIS CA CB sing N N 191 HIS CA HA sing N N 192 HIS C O doub N N 193 HIS C OXT sing N N 194 HIS CB CG sing N N 195 HIS CB HB2 sing N N 196 HIS CB HB3 sing N N 197 HIS CG ND1 sing Y N 198 HIS CG CD2 doub Y N 199 HIS ND1 CE1 doub Y N 200 HIS ND1 HD1 sing N N 201 HIS CD2 NE2 sing Y N 202 HIS CD2 HD2 sing N N 203 HIS CE1 NE2 sing Y N 204 HIS CE1 HE1 sing N N 205 HIS NE2 HE2 sing N N 206 HIS OXT HXT sing N N 207 ILE N CA sing N N 208 ILE N H sing N N 209 ILE N H2 sing N N 210 ILE CA C sing N N 211 ILE CA CB sing N N 212 ILE CA HA sing N N 213 ILE C O doub N N 214 ILE C OXT sing N N 215 ILE CB CG1 sing N N 216 ILE CB CG2 sing N N 217 ILE CB HB sing N N 218 ILE CG1 CD1 sing N N 219 ILE CG1 HG12 sing N N 220 ILE CG1 HG13 sing N N 221 ILE CG2 HG21 sing N N 222 ILE CG2 HG22 sing N N 223 ILE CG2 HG23 sing N N 224 ILE CD1 HD11 sing N N 225 ILE CD1 HD12 sing N N 226 ILE CD1 HD13 sing N N 227 ILE OXT HXT sing N N 228 LEU N CA sing N N 229 LEU N H sing N N 230 LEU N H2 sing N N 231 LEU CA C sing N N 232 LEU CA CB sing N N 233 LEU CA HA sing N N 234 LEU C O doub N N 235 LEU C OXT sing N N 236 LEU CB CG sing N N 237 LEU CB HB2 sing N N 238 LEU CB HB3 sing N N 239 LEU CG CD1 sing N N 240 LEU CG CD2 sing N N 241 LEU CG HG sing N N 242 LEU CD1 HD11 sing N N 243 LEU CD1 HD12 sing N N 244 LEU CD1 HD13 sing N N 245 LEU CD2 HD21 sing N N 246 LEU CD2 HD22 sing N N 247 LEU CD2 HD23 sing N N 248 LEU OXT HXT sing N N 249 LYS N CA sing N N 250 LYS N H sing N N 251 LYS N H2 sing N N 252 LYS CA C sing N N 253 LYS CA CB sing N N 254 LYS CA HA sing N N 255 LYS C O doub N N 256 LYS C OXT sing N N 257 LYS CB CG sing N N 258 LYS CB HB2 sing N N 259 LYS CB HB3 sing N N 260 LYS CG CD sing N N 261 LYS CG HG2 sing N N 262 LYS CG HG3 sing N N 263 LYS CD CE sing N N 264 LYS CD HD2 sing N N 265 LYS CD HD3 sing N N 266 LYS CE NZ sing N N 267 LYS CE HE2 sing N N 268 LYS CE HE3 sing N N 269 LYS NZ HZ1 sing N N 270 LYS NZ HZ2 sing N N 271 LYS NZ HZ3 sing N N 272 LYS OXT HXT sing N N 273 SER N CA sing N N 274 SER N H sing N N 275 SER N H2 sing N N 276 SER CA C sing N N 277 SER CA CB sing N N 278 SER CA HA sing N N 279 SER C O doub N N 280 SER C OXT sing N N 281 SER CB OG sing N N 282 SER CB HB2 sing N N 283 SER CB HB3 sing N N 284 SER OG HG sing N N 285 SER OXT HXT sing N N 286 THR N CA sing N N 287 THR N H sing N N 288 THR N H2 sing N N 289 THR CA C sing N N 290 THR CA CB sing N N 291 THR CA HA sing N N 292 THR C O doub N N 293 THR C OXT sing N N 294 THR CB OG1 sing N N 295 THR CB CG2 sing N N 296 THR CB HB sing N N 297 THR OG1 HG1 sing N N 298 THR CG2 HG21 sing N N 299 THR CG2 HG22 sing N N 300 THR CG2 HG23 sing N N 301 THR OXT HXT sing N N 302 TRP N CA sing N N 303 TRP N H sing N N 304 TRP N H2 sing N N 305 TRP CA C sing N N 306 TRP CA CB sing N N 307 TRP CA HA sing N N 308 TRP C O doub N N 309 TRP C OXT sing N N 310 TRP CB CG sing N N 311 TRP CB HB2 sing N N 312 TRP CB HB3 sing N N 313 TRP CG CD1 doub Y N 314 TRP CG CD2 sing Y N 315 TRP CD1 NE1 sing Y N 316 TRP CD1 HD1 sing N N 317 TRP CD2 CE2 doub Y N 318 TRP CD2 CE3 sing Y N 319 TRP NE1 CE2 sing Y N 320 TRP NE1 HE1 sing N N 321 TRP CE2 CZ2 sing Y N 322 TRP CE3 CZ3 doub Y N 323 TRP CE3 HE3 sing N N 324 TRP CZ2 CH2 doub Y N 325 TRP CZ2 HZ2 sing N N 326 TRP CZ3 CH2 sing Y N 327 TRP CZ3 HZ3 sing N N 328 TRP CH2 HH2 sing N N 329 TRP OXT HXT sing N N 330 TYR N CA sing N N 331 TYR N H sing N N 332 TYR N H2 sing N N 333 TYR CA C sing N N 334 TYR CA CB sing N N 335 TYR CA HA sing N N 336 TYR C O doub N N 337 TYR C OXT sing N N 338 TYR CB CG sing N N 339 TYR CB HB2 sing N N 340 TYR CB HB3 sing N N 341 TYR CG CD1 doub Y N 342 TYR CG CD2 sing Y N 343 TYR CD1 CE1 sing Y N 344 TYR CD1 HD1 sing N N 345 TYR CD2 CE2 doub Y N 346 TYR CD2 HD2 sing N N 347 TYR CE1 CZ doub Y N 348 TYR CE1 HE1 sing N N 349 TYR CE2 CZ sing Y N 350 TYR CE2 HE2 sing N N 351 TYR CZ OH sing N N 352 TYR OH HH sing N N 353 TYR OXT HXT sing N N 354 VAL N CA sing N N 355 VAL N H sing N N 356 VAL N H2 sing N N 357 VAL CA C sing N N 358 VAL CA CB sing N N 359 VAL CA HA sing N N 360 VAL C O doub N N 361 VAL C OXT sing N N 362 VAL CB CG1 sing N N 363 VAL CB CG2 sing N N 364 VAL CB HB sing N N 365 VAL CG1 HG11 sing N N 366 VAL CG1 HG12 sing N N 367 VAL CG1 HG13 sing N N 368 VAL CG2 HG21 sing N N 369 VAL CG2 HG22 sing N N 370 VAL CG2 HG23 sing N N 371 VAL OXT HXT sing N N 372 #