HEADER HYDROLASE 03-DEC-98 1FDP TITLE PROENZYME OF HUMAN COMPLEMENT FACTOR D, RECOMBINANT PROFACTOR D COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROENZYME OF COMPLEMENT FACTOR D; COMPND 3 CHAIN: A, B, C, D; COMPND 4 EC: 3.4.21.46; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: VIRUS; SOURCE 10 EXPRESSION_SYSTEM_VECTOR: BACULOVIRUS; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: ACNPV KEYWDS SERINE PROTEASE, COMPLEMENT, FACTOR D, PROFACTOR D, ZYMOGEN, KEYWDS 2 PROENZYME, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR H.JING,K.J.MACON,D.MOORE,L.J.DELUCAS,J.E.VOLANAKIS,S.V.L.NARAYANA REVDAT 5 09-AUG-23 1FDP 1 SEQADV REVDAT 4 07-DEC-11 1FDP 1 JRNL VERSN REVDAT 3 24-FEB-09 1FDP 1 VERSN REVDAT 2 01-APR-03 1FDP 1 JRNL REVDAT 1 03-DEC-99 1FDP 0 JRNL AUTH H.JING,K.J.MACON,D.MOORE,L.J.DELUCAS,J.E.VOLANAKIS, JRNL AUTH 2 S.V.NARAYANA JRNL TITL STRUCTURAL BASIS OF PROFACTOR D ACTIVATION: FROM A HIGHLY JRNL TITL 2 FLEXIBLE ZYMOGEN TO A NOVEL SELF-INHIBITED SERINE PROTEASE, JRNL TITL 3 COMPLEMENT FACTOR D. JRNL REF EMBO J. V. 18 804 1999 JRNL REFN ISSN 0261-4189 JRNL PMID 10022823 JRNL DOI 10.1093/EMBOJ/18.4.804 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.JING,Y.S.BABU,D.MOORE,J.M.KILPATRICK,X.-Y.LIU, REMARK 1 AUTH 2 J.E.VOLANAKIS,S.V.L.NARAYANA REMARK 1 TITL STRUCTURES OF NATIVE AND COMPLEXED COMPLEMENT FACTOR D: REMARK 1 TITL 2 IMPLICATIONS OF THE ATYPICAL HIS57 CONFORMATION AND REMARK 1 TITL 3 SELF-INHIBITORY LOOP IN THE REGULATION OF SPECIFIC SERINE REMARK 1 TITL 4 PROTEASE ACTIVITY REMARK 1 REF J.MOL.BIOL. V. 282 1061 1998 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.E.VOLANAKIS,S.V.L.NARAYANA REMARK 1 TITL COMPLEMENT FACTOR D, A NOVEL SERINE PROTEASE REMARK 1 REF PROTEIN SCI. V. 5 553 1996 REMARK 1 REFN ISSN 0961-8368 REMARK 1 REFERENCE 3 REMARK 1 AUTH S.V.L.NARAYANA,M.CARSON,O.EL-KABBANI,J.M.KILPATRICK,D.MOORE, REMARK 1 AUTH 2 X.CHEN,C.E.BUGG,J.E.VOLANAKIS,L.J.DELUCAS REMARK 1 TITL STRUCTURE OF HUMAN FACTOR D. A COMPLEMENT SYSTEM PROTEIN AT REMARK 1 TITL 2 2.0 A RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 235 695 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 4 REMARK 1 AUTH S.V.L.NARAYANA,Y.YAMAUCHI,K.J.MACON,D.MOORE,L.J.DELUCAS, REMARK 1 AUTH 2 J.E.VOLANAKIS REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC STUDIES ON HUMAN COMPLEMENT REMARK 1 TITL 2 PROFACTOR D REMARK 1 REF J.MOL.BIOL. V. 235 1144 1994 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1000000.000 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0010 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.5 REMARK 3 NUMBER OF REFLECTIONS : 43713 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.251 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4399 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 8 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.20 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.40 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4587 REMARK 3 BIN R VALUE (WORKING SET) : 0.2790 REMARK 3 BIN FREE R VALUE : 0.3130 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 533 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6133 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 631 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 22.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.50 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.26 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.30 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.008 REMARK 3 BOND ANGLES (DEGREES) : 1.430 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.41 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.770 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : RESTRAINED WITH NCS AVERAGE PHASES REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPHCSDX.PRO REMARK 3 TOPOLOGY FILE 2 : TOPH19.SOL REMARK 3 TOPOLOGY FILE 3 : TOPH19.PEP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: BULK SOLVENT CORRECTION WAS APPLIED REMARK 4 REMARK 4 1FDP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-DEC-98. REMARK 100 THE DEPOSITION ID IS D_1000000200. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-FEB-97 REMARK 200 TEMPERATURE (KELVIN) : 95.0 REMARK 200 PH : 5.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU RU200 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : COLLIMATOR REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43713 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : 2.500 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.8000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.8 REMARK 200 DATA REDUNDANCY IN SHELL : 2.50 REMARK 200 R MERGE FOR SHELL (I) : 0.23400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: CORE REGION OF FACTOR D (1DSU MOLECULE B) REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 36.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.90 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: CRYSTALLIZATION CONDITIONS: THE REMARK 280 RESERVOIR SOLUTION CONTAINED 10-12% PEG-6000 AND 30MM MES (PH5.2) REMARK 280 . THE DROPS CONTAINED EQUAL VOLUME OF RESERVOIR SOLUTION AND REMARK 280 PROTEIN SOLUTION (10MG/ML), VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.16000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 ARG A 13 REMARK 465 GLY A 14 REMARK 465 ARG A 15 REMARK 465 VAL A 145 REMARK 465 ASN A 146 REMARK 465 HIS A 147 REMARK 465 ALA A 148 REMARK 465 GLY A 149 REMARK 465 ARG A 150 REMARK 465 ARG A 151 REMARK 465 ALA B 9 REMARK 465 ALA B 10 REMARK 465 PRO B 11 REMARK 465 PRO B 12 REMARK 465 ARG B 13 REMARK 465 GLY B 14 REMARK 465 ARG B 15 REMARK 465 ILE B 16 REMARK 465 LEU B 17 REMARK 465 GLY B 18 REMARK 465 GLY B 19 REMARK 465 ARG B 20 REMARK 465 GLU B 21 REMARK 465 ILE B 144 REMARK 465 VAL B 145 REMARK 465 ASN B 146 REMARK 465 HIS B 147 REMARK 465 ALA B 148 REMARK 465 GLY B 149 REMARK 465 ARG B 150 REMARK 465 ARG B 151 REMARK 465 ARG B 187 REMARK 465 ARG B 188 REMARK 465 ASP B 189 REMARK 465 SER B 190 REMARK 465 CYS B 191 REMARK 465 LYS B 192 REMARK 465 SER B 216A REMARK 465 ARG B 216B REMARK 465 VAL B 216C REMARK 465 CYS B 216D REMARK 465 GLY B 216E REMARK 465 ASN B 216F REMARK 465 ARG B 216G REMARK 465 ALA C 9 REMARK 465 ALA C 10 REMARK 465 PRO C 11 REMARK 465 PRO C 12 REMARK 465 ARG C 13 REMARK 465 GLY C 14 REMARK 465 ARG C 15 REMARK 465 ILE C 16 REMARK 465 LEU C 17 REMARK 465 GLY C 18 REMARK 465 GLY C 19 REMARK 465 ARG C 20 REMARK 465 GLU C 21 REMARK 465 VAL C 145 REMARK 465 ASN C 146 REMARK 465 HIS C 147 REMARK 465 ALA C 148 REMARK 465 GLY C 149 REMARK 465 ARG C 150 REMARK 465 ARG C 151 REMARK 465 PRO C 152 REMARK 465 ARG C 187 REMARK 465 ARG C 188 REMARK 465 ASP C 189 REMARK 465 SER C 190 REMARK 465 CYS C 191 REMARK 465 LYS C 192 REMARK 465 GLY C 193 REMARK 465 GLY C 215A REMARK 465 SER C 215B REMARK 465 ARG C 215C REMARK 465 VAL C 215D REMARK 465 CYS C 215E REMARK 465 GLY C 215F REMARK 465 ASN C 215G REMARK 465 ARG C 215H REMARK 465 ALA D 9 REMARK 465 ALA D 10 REMARK 465 PRO D 11 REMARK 465 PRO D 12 REMARK 465 ARG D 13 REMARK 465 GLY D 14 REMARK 465 ARG D 15 REMARK 465 ILE D 16 REMARK 465 LEU D 17 REMARK 465 GLY D 18 REMARK 465 GLY D 19 REMARK 465 ARG D 20 REMARK 465 GLU D 21 REMARK 465 VAL D 145 REMARK 465 ASN D 146 REMARK 465 HIS D 147 REMARK 465 ALA D 148 REMARK 465 GLY D 149 REMARK 465 ARG D 150 REMARK 465 ARG D 151 REMARK 465 ARG D 187 REMARK 465 ARG D 188 REMARK 465 ASP D 189 REMARK 465 SER D 190 REMARK 465 CYS D 191 REMARK 465 LYS D 192 REMARK 465 GLY D 193 REMARK 465 SER D 216A REMARK 465 ARG D 216B REMARK 465 VAL D 216C REMARK 465 CYS D 216D REMARK 465 GLY D 216E REMARK 465 ASN D 216F REMARK 465 ARG D 216G REMARK 465 LYS D 216H REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 16 CA REMARK 470 ILE A 143 O REMARK 470 GLY B 142 O REMARK 470 ASN B 186 O REMARK 470 GLY B 216 O REMARK 470 ILE C 143 O REMARK 470 ASN C 186 O REMARK 470 SER C 215 O REMARK 470 ILE D 143 O REMARK 470 ASN D 186 O REMARK 470 GLY D 216 O REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 304 O HOH D 333 2.07 REMARK 500 O GLY D 197 O HOH D 378 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 372 O HOH D 385 1545 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 20 NE - CZ - NH2 ANGL. DEV. = 3.3 DEGREES REMARK 500 ARG A 170A NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG C 170A NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG D 121 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG D 170A NE - CZ - NH2 ANGL. DEV. = 3.1 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 17 85.16 66.86 REMARK 500 ARG A 20 -31.11 -29.16 REMARK 500 GLU A 21 -74.90 -99.24 REMARK 500 LEU A 59 37.31 -85.08 REMARK 500 GLU A 60 -83.65 -71.56 REMARK 500 ALA A 61B 8.93 -54.54 REMARK 500 ASP A 153 -145.79 87.01 REMARK 500 HIS A 172 79.02 49.90 REMARK 500 SER A 190 14.58 -69.75 REMARK 500 CYS A 191 -29.34 -153.01 REMARK 500 SER B 54 -159.32 -139.87 REMARK 500 ASP B 153 -137.65 -82.43 REMARK 500 HIS B 171 -87.44 -112.28 REMARK 500 ASP B 173 67.00 10.06 REMARK 500 SER B 185 -118.96 -104.01 REMARK 500 GLU C 60 -98.69 -59.24 REMARK 500 ALA C 61A 66.36 149.02 REMARK 500 HIS C 171 115.59 26.01 REMARK 500 HIS C 172 -37.15 155.58 REMARK 500 ASP C 173 -17.77 -156.78 REMARK 500 SER C 185 -139.94 -97.67 REMARK 500 SER C 195 -168.72 -119.52 REMARK 500 HIS D 57 0.02 -69.20 REMARK 500 HIS D 171 -95.71 -105.48 REMARK 500 ASP D 173 59.86 35.87 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: TRA REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC TRIAD REMARK 800 REMARK 800 SITE_IDENTIFIER: TRB REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC TRIAD REMARK 800 REMARK 800 SITE_IDENTIFIER: TRC REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC TRIAD REMARK 800 REMARK 800 SITE_IDENTIFIER: TRD REMARK 800 EVIDENCE_CODE: AUTHOR REMARK 800 SITE_DESCRIPTION: CATALYTIC TRIAD REMARK 999 REMARK 999 SEQUENCE REMARK 999 CHYMOTRYPSINOGEN NUMBERING IS USED DBREF 1FDP A 9 243 UNP P00746 CFAD_HUMAN 19 253 DBREF 1FDP B 9 243 UNP P00746 CFAD_HUMAN 19 253 DBREF 1FDP C 9 243 UNP P00746 CFAD_HUMAN 19 253 DBREF 1FDP D 9 243 UNP P00746 CFAD_HUMAN 19 253 SEQADV 1FDP PRO A 11 UNP P00746 ARG 21 CONFLICT SEQADV 1FDP PRO B 11 UNP P00746 ARG 21 CONFLICT SEQADV 1FDP PRO C 11 UNP P00746 ARG 21 CONFLICT SEQADV 1FDP PRO D 11 UNP P00746 ARG 21 CONFLICT SEQRES 1 A 235 ALA ALA PRO PRO ARG GLY ARG ILE LEU GLY GLY ARG GLU SEQRES 2 A 235 ALA GLU ALA HIS ALA ARG PRO TYR MET ALA SER VAL GLN SEQRES 3 A 235 LEU ASN GLY ALA HIS LEU CYS GLY GLY VAL LEU VAL ALA SEQRES 4 A 235 GLU GLN TRP VAL LEU SER ALA ALA HIS CYS LEU GLU ASP SEQRES 5 A 235 ALA ALA ASP GLY LYS VAL GLN VAL LEU LEU GLY ALA HIS SEQRES 6 A 235 SER LEU SER GLN PRO GLU PRO SER LYS ARG LEU TYR ASP SEQRES 7 A 235 VAL LEU ARG ALA VAL PRO HIS PRO ASP SER GLN PRO ASP SEQRES 8 A 235 THR ILE ASP HIS ASP LEU LEU LEU LEU GLN LEU SER GLU SEQRES 9 A 235 LYS ALA THR LEU GLY PRO ALA VAL ARG PRO LEU PRO TRP SEQRES 10 A 235 GLN ARG VAL ASP ARG ASP VAL ALA PRO GLY THR LEU CYS SEQRES 11 A 235 ASP VAL ALA GLY TRP GLY ILE VAL ASN HIS ALA GLY ARG SEQRES 12 A 235 ARG PRO ASP SER LEU GLN HIS VAL LEU LEU PRO VAL LEU SEQRES 13 A 235 ASP ARG ALA THR CYS ASN ARG ARG THR HIS HIS ASP GLY SEQRES 14 A 235 ALA ILE THR GLU ARG LEU MET CYS ALA GLU SER ASN ARG SEQRES 15 A 235 ARG ASP SER CYS LYS GLY ASP SER GLY GLY PRO LEU VAL SEQRES 16 A 235 CYS GLY GLY VAL LEU GLU GLY VAL VAL THR SER GLY SER SEQRES 17 A 235 ARG VAL CYS GLY ASN ARG LYS LYS PRO GLY ILE TYR THR SEQRES 18 A 235 ARG VAL ALA SER TYR ALA ALA TRP ILE ASP SER VAL LEU SEQRES 19 A 235 ALA SEQRES 1 B 235 ALA ALA PRO PRO ARG GLY ARG ILE LEU GLY GLY ARG GLU SEQRES 2 B 235 ALA GLU ALA HIS ALA ARG PRO TYR MET ALA SER VAL GLN SEQRES 3 B 235 LEU ASN GLY ALA HIS LEU CYS GLY GLY VAL LEU VAL ALA SEQRES 4 B 235 GLU GLN TRP VAL LEU SER ALA ALA HIS CYS LEU GLU ASP SEQRES 5 B 235 ALA ALA ASP GLY LYS VAL GLN VAL LEU LEU GLY ALA HIS SEQRES 6 B 235 SER LEU SER GLN PRO GLU PRO SER LYS ARG LEU TYR ASP SEQRES 7 B 235 VAL LEU ARG ALA VAL PRO HIS PRO ASP SER GLN PRO ASP SEQRES 8 B 235 THR ILE ASP HIS ASP LEU LEU LEU LEU GLN LEU SER GLU SEQRES 9 B 235 LYS ALA THR LEU GLY PRO ALA VAL ARG PRO LEU PRO TRP SEQRES 10 B 235 GLN ARG VAL ASP ARG ASP VAL ALA PRO GLY THR LEU CYS SEQRES 11 B 235 ASP VAL ALA GLY TRP GLY ILE VAL ASN HIS ALA GLY ARG SEQRES 12 B 235 ARG PRO ASP SER LEU GLN HIS VAL LEU LEU PRO VAL LEU SEQRES 13 B 235 ASP ARG ALA THR CYS ASN ARG ARG THR HIS HIS ASP GLY SEQRES 14 B 235 ALA ILE THR GLU ARG LEU MET CYS ALA GLU SER ASN ARG SEQRES 15 B 235 ARG ASP SER CYS LYS GLY ASP SER GLY GLY PRO LEU VAL SEQRES 16 B 235 CYS GLY GLY VAL LEU GLU GLY VAL VAL THR SER GLY SER SEQRES 17 B 235 ARG VAL CYS GLY ASN ARG LYS LYS PRO GLY ILE TYR THR SEQRES 18 B 235 ARG VAL ALA SER TYR ALA ALA TRP ILE ASP SER VAL LEU SEQRES 19 B 235 ALA SEQRES 1 C 235 ALA ALA PRO PRO ARG GLY ARG ILE LEU GLY GLY ARG GLU SEQRES 2 C 235 ALA GLU ALA HIS ALA ARG PRO TYR MET ALA SER VAL GLN SEQRES 3 C 235 LEU ASN GLY ALA HIS LEU CYS GLY GLY VAL LEU VAL ALA SEQRES 4 C 235 GLU GLN TRP VAL LEU SER ALA ALA HIS CYS LEU GLU ASP SEQRES 5 C 235 ALA ALA ASP GLY LYS VAL GLN VAL LEU LEU GLY ALA HIS SEQRES 6 C 235 SER LEU SER GLN PRO GLU PRO SER LYS ARG LEU TYR ASP SEQRES 7 C 235 VAL LEU ARG ALA VAL PRO HIS PRO ASP SER GLN PRO ASP SEQRES 8 C 235 THR ILE ASP HIS ASP LEU LEU LEU LEU GLN LEU SER GLU SEQRES 9 C 235 LYS ALA THR LEU GLY PRO ALA VAL ARG PRO LEU PRO TRP SEQRES 10 C 235 GLN ARG VAL ASP ARG ASP VAL ALA PRO GLY THR LEU CYS SEQRES 11 C 235 ASP VAL ALA GLY TRP GLY ILE VAL ASN HIS ALA GLY ARG SEQRES 12 C 235 ARG PRO ASP SER LEU GLN HIS VAL LEU LEU PRO VAL LEU SEQRES 13 C 235 ASP ARG ALA THR CYS ASN ARG ARG THR HIS HIS ASP GLY SEQRES 14 C 235 ALA ILE THR GLU ARG LEU MET CYS ALA GLU SER ASN ARG SEQRES 15 C 235 ARG ASP SER CYS LYS GLY ASP SER GLY GLY PRO LEU VAL SEQRES 16 C 235 CYS GLY GLY VAL LEU GLU GLY VAL VAL THR SER GLY SER SEQRES 17 C 235 ARG VAL CYS GLY ASN ARG LYS LYS PRO GLY ILE TYR THR SEQRES 18 C 235 ARG VAL ALA SER TYR ALA ALA TRP ILE ASP SER VAL LEU SEQRES 19 C 235 ALA SEQRES 1 D 235 ALA ALA PRO PRO ARG GLY ARG ILE LEU GLY GLY ARG GLU SEQRES 2 D 235 ALA GLU ALA HIS ALA ARG PRO TYR MET ALA SER VAL GLN SEQRES 3 D 235 LEU ASN GLY ALA HIS LEU CYS GLY GLY VAL LEU VAL ALA SEQRES 4 D 235 GLU GLN TRP VAL LEU SER ALA ALA HIS CYS LEU GLU ASP SEQRES 5 D 235 ALA ALA ASP GLY LYS VAL GLN VAL LEU LEU GLY ALA HIS SEQRES 6 D 235 SER LEU SER GLN PRO GLU PRO SER LYS ARG LEU TYR ASP SEQRES 7 D 235 VAL LEU ARG ALA VAL PRO HIS PRO ASP SER GLN PRO ASP SEQRES 8 D 235 THR ILE ASP HIS ASP LEU LEU LEU LEU GLN LEU SER GLU SEQRES 9 D 235 LYS ALA THR LEU GLY PRO ALA VAL ARG PRO LEU PRO TRP SEQRES 10 D 235 GLN ARG VAL ASP ARG ASP VAL ALA PRO GLY THR LEU CYS SEQRES 11 D 235 ASP VAL ALA GLY TRP GLY ILE VAL ASN HIS ALA GLY ARG SEQRES 12 D 235 ARG PRO ASP SER LEU GLN HIS VAL LEU LEU PRO VAL LEU SEQRES 13 D 235 ASP ARG ALA THR CYS ASN ARG ARG THR HIS HIS ASP GLY SEQRES 14 D 235 ALA ILE THR GLU ARG LEU MET CYS ALA GLU SER ASN ARG SEQRES 15 D 235 ARG ASP SER CYS LYS GLY ASP SER GLY GLY PRO LEU VAL SEQRES 16 D 235 CYS GLY GLY VAL LEU GLU GLY VAL VAL THR SER GLY SER SEQRES 17 D 235 ARG VAL CYS GLY ASN ARG LYS LYS PRO GLY ILE TYR THR SEQRES 18 D 235 ARG VAL ALA SER TYR ALA ALA TRP ILE ASP SER VAL LEU SEQRES 19 D 235 ALA FORMUL 5 HOH *631(H2 O) HELIX 1 1 ALA A 56 LEU A 59 5 4 HELIX 2 2 ARG A 165 ARG A 170A 1 7 HELIX 3 3 ASP A 189 LYS A 192 1 4 HELIX 4 4 VAL A 231 VAL A 241 5 11 HELIX 5 5 ALA B 56 GLU B 60 5 5 HELIX 6 6 ARG B 165 ASN B 169 1 5 HELIX 7 7 VAL B 231 VAL B 241 5 11 HELIX 8 8 ALA C 56 LEU C 59 5 4 HELIX 9 9 ARG C 165 ARG C 170A 1 7 HELIX 10 10 VAL C 231 VAL C 241 5 11 HELIX 11 11 ALA D 56 CYS D 58 5 3 HELIX 12 12 ARG D 165 CYS D 168 1 4 HELIX 13 13 VAL D 231 VAL D 241 5 11 SHEET 1 A 7 ARG A 81 ASP A 84 0 SHEET 2 A 7 VAL A 64 LEU A 68 -1 N LEU A 68 O ARG A 81 SHEET 3 A 7 MET A 30 LEU A 35 -1 N GLN A 34 O GLN A 65 SHEET 4 A 7 ALA A 39 ALA A 48 -1 N GLY A 44 O ALA A 31 SHEET 5 A 7 TRP A 51 SER A 54 -1 N LEU A 53 O VAL A 45 SHEET 6 A 7 LEU A 104 LEU A 108 -1 N LEU A 106 O VAL A 52 SHEET 7 A 7 VAL A 85 PRO A 90 -1 N VAL A 89 O LEU A 105 SHEET 1 B 2 LEU A 135 GLY A 140 0 SHEET 2 B 2 GLN A 156 PRO A 161 -1 N LEU A 160 O CYS A 136 SHEET 1 C 4 LEU A 180 ALA A 183 0 SHEET 2 C 4 GLY A 226 ARG A 230 -1 N TYR A 228 O MET A 181 SHEET 3 C 4 VAL A 208 VAL A 213 -1 N VAL A 212 O THR A 229 SHEET 4 C 4 PRO A 198 CYS A 201 -1 N CYS A 201 O VAL A 208 SHEET 1 D 7 ARG B 81 ASP B 84 0 SHEET 2 D 7 VAL B 64 LEU B 68 -1 N LEU B 68 O ARG B 81 SHEET 3 D 7 MET B 30 LEU B 35 -1 N GLN B 34 O GLN B 65 SHEET 4 D 7 ALA B 39 ALA B 48 -1 N GLY B 44 O ALA B 31 SHEET 5 D 7 TRP B 51 SER B 54 -1 N LEU B 53 O VAL B 45 SHEET 6 D 7 LEU B 104 LEU B 108 -1 N LEU B 106 O VAL B 52 SHEET 7 D 7 VAL B 85 PRO B 90 -1 N VAL B 89 O LEU B 105 SHEET 1 E 2 LEU B 135 GLY B 140 0 SHEET 2 E 2 GLN B 156 PRO B 161 -1 N LEU B 160 O CYS B 136 SHEET 1 F 4 LEU B 180 ALA B 183 0 SHEET 2 F 4 GLY B 226 ARG B 230 -1 N TYR B 228 O MET B 181 SHEET 3 F 4 VAL B 208 VAL B 213 -1 N VAL B 212 O THR B 229 SHEET 4 F 4 PRO B 198 CYS B 201 -1 N CYS B 201 O VAL B 208 SHEET 1 G 7 ARG C 81 ASP C 84 0 SHEET 2 G 7 VAL C 64 LEU C 68 -1 N LEU C 68 O ARG C 81 SHEET 3 G 7 MET C 30 LEU C 35 -1 N GLN C 34 O GLN C 65 SHEET 4 G 7 ALA C 39 ALA C 48 -1 N GLY C 44 O ALA C 31 SHEET 5 G 7 TRP C 51 SER C 54 -1 N LEU C 53 O VAL C 45 SHEET 6 G 7 LEU C 104 LEU C 108 -1 N LEU C 106 O VAL C 52 SHEET 7 G 7 VAL C 85 PRO C 90 -1 N VAL C 89 O LEU C 105 SHEET 1 H 2 LEU C 135 GLY C 140 0 SHEET 2 H 2 GLN C 156 PRO C 161 -1 N LEU C 160 O CYS C 136 SHEET 1 I 4 LEU C 180 ALA C 183 0 SHEET 2 I 4 GLY C 226 ARG C 230 -1 N TYR C 228 O MET C 181 SHEET 3 I 4 VAL C 208 VAL C 213 -1 N VAL C 212 O THR C 229 SHEET 4 I 4 PRO C 198 CYS C 201 -1 N CYS C 201 O VAL C 208 SHEET 1 J 7 ARG D 81 ASP D 84 0 SHEET 2 J 7 VAL D 64 LEU D 68 -1 N LEU D 68 O ARG D 81 SHEET 3 J 7 MET D 30 LEU D 35 -1 N GLN D 34 O GLN D 65 SHEET 4 J 7 ALA D 39 ALA D 48 -1 N GLY D 44 O ALA D 31 SHEET 5 J 7 TRP D 51 SER D 54 -1 N LEU D 53 O VAL D 45 SHEET 6 J 7 LEU D 104 LEU D 108 -1 N LEU D 106 O VAL D 52 SHEET 7 J 7 VAL D 85 PRO D 90 -1 N VAL D 89 O LEU D 105 SHEET 1 K 2 LEU D 135 GLY D 140 0 SHEET 2 K 2 GLN D 156 PRO D 161 -1 N LEU D 160 O CYS D 136 SHEET 1 L 4 LEU D 180 ALA D 183 0 SHEET 2 L 4 GLY D 226 ARG D 230 -1 N TYR D 228 O MET D 181 SHEET 3 L 4 VAL D 208 VAL D 213 -1 N VAL D 212 O THR D 229 SHEET 4 L 4 PRO D 198 CYS D 201 -1 N CYS D 201 O VAL D 208 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.03 SSBOND 2 CYS A 136 CYS A 201 1555 1555 2.03 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.02 SSBOND 4 CYS A 191 CYS A 220 1555 1555 2.03 SSBOND 5 CYS B 42 CYS B 58 1555 1555 2.01 SSBOND 6 CYS B 136 CYS B 201 1555 1555 2.03 SSBOND 7 CYS B 168 CYS B 182 1555 1555 2.03 SSBOND 8 CYS C 42 CYS C 58 1555 1555 2.04 SSBOND 9 CYS C 136 CYS C 201 1555 1555 2.03 SSBOND 10 CYS C 168 CYS C 182 1555 1555 2.03 SSBOND 11 CYS D 42 CYS D 58 1555 1555 2.03 SSBOND 12 CYS D 136 CYS D 201 1555 1555 2.04 SSBOND 13 CYS D 168 CYS D 182 1555 1555 2.03 SITE 1 TRA 3 HIS A 57 ASP A 102 SER A 195 SITE 1 TRB 3 HIS B 57 ASP B 102 SER B 195 SITE 1 TRC 3 HIS C 57 ASP C 102 SER C 195 SITE 1 TRD 3 HIS D 57 ASP D 102 SER D 195 CRYST1 65.050 70.320 86.300 90.00 101.98 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015373 0.000000 0.003262 0.00000 SCALE2 0.000000 0.014221 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011845 0.00000 MTRIX1 1 0.999940 -0.001379 0.010893 -8.53400 1 MTRIX2 1 0.003579 0.978835 -0.204619 1.33500 1 MTRIX3 1 -0.010380 0.204646 0.978781 43.12310 1 MTRIX1 2 -0.999994 -0.000812 -0.003385 23.14600 1 MTRIX2 2 0.000171 -0.982728 0.185055 32.39610 1 MTRIX3 2 -0.003477 0.185053 0.982722 28.47630 1 MTRIX1 3 -0.999827 -0.018451 -0.002494 32.53850 1 MTRIX2 3 0.018433 -0.999804 0.007156 33.12210 1 MTRIX3 3 -0.002626 0.007109 0.999971 -13.66640 1