HEADER STRUCTURAL PROTEIN 24-JUL-00 1FEX TITLE SOLUTION STRUCTURE OF MYB-DOMAIN OF HUMAN RAP1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: TRF2-INTERACTING TELOMERIC RAP1 PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: MYB-DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THIS PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THIS PEPTIDE OCCURS NATURALLY IN HUMANS (HOMO SAPIENS). KEYWDS HELIX TURN HELIX, RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE, KEYWDS 2 RSGI, STRUCTURAL GENOMICS, STRUCTURAL PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR S.HANAOKA,Y.NISHIMURA,RIKEN STRUCTURAL GENOMICS/PROTEOMICS INITIATIVE AUTHOR 2 (RSGI) REVDAT 3 23-FEB-22 1FEX 1 REMARK REVDAT 2 24-FEB-09 1FEX 1 VERSN REVDAT 1 19-SEP-01 1FEX 0 JRNL AUTH S.HANAOKA,A.NAGADOI,S.YOSHIMURA,S.AIMOTO,B.LI,T.DE LANGE, JRNL AUTH 2 Y.NISHIMURA JRNL TITL NMR STRUCTURE OF THE HRAP1 MYB MOTIF REVEALS A CANONICAL JRNL TITL 2 THREE-HELIX BUNDLE LACKING THE POSITIVE SURFACE CHARGE JRNL TITL 3 TYPICAL OF MYB DNA-BINDING DOMAINS. JRNL REF J.MOL.BIOL. V. 312 167 2001 JRNL REFN ISSN 0022-2836 JRNL PMID 11545594 JRNL DOI 10.1006/JMBI.2001.4924 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NMRPIPE 4.2.5, X-PLOR 3.851 REMARK 3 AUTHORS : DELAGLIO, F., GRZESIEK, S., VUISTER, G.W., ZHU,G., REMARK 3 PFEIFER, J. AND BAX,A. (NMRPIPE), BRNGER,A.T. (X- REMARK 3 PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 884 RESTRAINTS, 838 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 39 REMARK 3 DIHEDRAL ANGLE RESTRAINTS, 7 DISTANCE RESTRAINTS FROM HYDROGEN REMARK 3 BONDS. REMARK 4 REMARK 4 1FEX COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011526. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 300 REMARK 210 PH : 5.5 REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 1.0MM PROTEIN CONCENTRATION IN REMARK 210 100MM POTASSIUM PHOSPHATE BUFFER REMARK 210 PH5.5, 1MM NAN3 ; 90%H2O, 10%D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : X-PLOR 3.851 REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : THE SUBMITTED CONFORMER MODELS REMARK 210 ARE 25 STRUCTURE WITH THE LOWEST REMARK 210 ENERGY IN THOSE WITH THE FEWEST REMARK 210 NUMBER OF CONSTRAINT VIOLATIONS. REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ARG A 2 64.14 -103.32 REMARK 500 1 ILE A 3 -169.86 46.31 REMARK 500 1 THR A 6 -165.20 -112.87 REMARK 500 1 ASN A 20 -60.79 -98.27 REMARK 500 1 ALA A 21 92.71 -60.51 REMARK 500 1 ARG A 22 28.76 -141.46 REMARK 500 1 SER A 25 -57.61 -158.95 REMARK 500 1 ALA A 31 -63.73 -90.40 REMARK 500 1 THR A 42 -166.54 -108.94 REMARK 500 1 HIS A 56 46.65 -169.87 REMARK 500 1 LEU A 57 -69.31 -129.91 REMARK 500 2 ARG A 2 -157.44 -157.93 REMARK 500 2 ILE A 3 -172.15 38.58 REMARK 500 2 ALA A 4 89.77 47.06 REMARK 500 2 THR A 6 -176.28 -67.37 REMARK 500 2 ARG A 22 -43.11 -166.63 REMARK 500 2 SER A 25 -43.14 -165.92 REMARK 500 2 SER A 39 -72.38 -66.40 REMARK 500 2 THR A 42 -81.21 -88.44 REMARK 500 2 GLN A 43 65.07 -164.60 REMARK 500 2 HIS A 56 49.43 -168.69 REMARK 500 2 LEU A 57 -47.96 -131.88 REMARK 500 3 ALA A 21 76.09 -67.83 REMARK 500 3 SER A 25 -56.78 -162.77 REMARK 500 3 THR A 28 29.11 -156.39 REMARK 500 3 SER A 39 72.86 -161.63 REMARK 500 3 GLN A 43 86.41 59.82 REMARK 500 3 HIS A 56 49.69 -163.63 REMARK 500 3 LEU A 57 -65.11 -124.55 REMARK 500 3 ARG A 58 105.46 -58.69 REMARK 500 4 ALA A 4 -166.94 53.14 REMARK 500 4 ARG A 22 27.42 -153.36 REMARK 500 4 SER A 25 -38.61 -168.19 REMARK 500 4 SER A 39 -73.36 -123.98 REMARK 500 4 LEU A 41 -137.70 -140.52 REMARK 500 4 THR A 42 -62.33 -144.83 REMARK 500 4 GLN A 43 71.22 -173.22 REMARK 500 4 HIS A 56 44.41 -169.08 REMARK 500 4 LEU A 57 -70.08 -127.25 REMARK 500 5 PHE A 5 73.64 -115.09 REMARK 500 5 ALA A 21 99.91 -45.84 REMARK 500 5 ARG A 22 28.97 -144.90 REMARK 500 5 SER A 25 -42.70 -165.16 REMARK 500 5 THR A 28 15.93 -147.93 REMARK 500 5 ASN A 30 27.07 49.48 REMARK 500 5 THR A 42 -171.55 -56.44 REMARK 500 5 HIS A 56 20.24 -150.00 REMARK 500 5 LEU A 57 -64.84 -93.14 REMARK 500 6 ALA A 21 -86.67 -49.58 REMARK 500 6 SER A 25 -49.66 -152.44 REMARK 500 REMARK 500 THIS ENTRY HAS 225 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 2 0.30 SIDE CHAIN REMARK 500 1 ARG A 22 0.26 SIDE CHAIN REMARK 500 1 ARG A 52 0.23 SIDE CHAIN REMARK 500 1 ARG A 58 0.29 SIDE CHAIN REMARK 500 2 ARG A 2 0.25 SIDE CHAIN REMARK 500 2 ARG A 22 0.28 SIDE CHAIN REMARK 500 2 ARG A 52 0.27 SIDE CHAIN REMARK 500 2 ARG A 58 0.30 SIDE CHAIN REMARK 500 3 ARG A 2 0.28 SIDE CHAIN REMARK 500 3 ARG A 22 0.29 SIDE CHAIN REMARK 500 3 ARG A 52 0.19 SIDE CHAIN REMARK 500 3 ARG A 58 0.30 SIDE CHAIN REMARK 500 4 ARG A 2 0.22 SIDE CHAIN REMARK 500 4 ARG A 22 0.29 SIDE CHAIN REMARK 500 4 ARG A 52 0.21 SIDE CHAIN REMARK 500 4 ARG A 58 0.32 SIDE CHAIN REMARK 500 5 ARG A 2 0.28 SIDE CHAIN REMARK 500 5 ARG A 22 0.31 SIDE CHAIN REMARK 500 5 ARG A 52 0.25 SIDE CHAIN REMARK 500 5 ARG A 58 0.32 SIDE CHAIN REMARK 500 6 ARG A 2 0.31 SIDE CHAIN REMARK 500 6 ARG A 22 0.28 SIDE CHAIN REMARK 500 6 ARG A 52 0.27 SIDE CHAIN REMARK 500 6 ARG A 58 0.21 SIDE CHAIN REMARK 500 7 ARG A 2 0.23 SIDE CHAIN REMARK 500 7 ARG A 22 0.27 SIDE CHAIN REMARK 500 7 ARG A 52 0.31 SIDE CHAIN REMARK 500 7 ARG A 58 0.32 SIDE CHAIN REMARK 500 8 ARG A 2 0.21 SIDE CHAIN REMARK 500 8 ARG A 22 0.23 SIDE CHAIN REMARK 500 8 ARG A 52 0.32 SIDE CHAIN REMARK 500 8 ARG A 58 0.26 SIDE CHAIN REMARK 500 9 ARG A 2 0.23 SIDE CHAIN REMARK 500 9 ARG A 22 0.29 SIDE CHAIN REMARK 500 9 ARG A 52 0.23 SIDE CHAIN REMARK 500 9 ARG A 58 0.28 SIDE CHAIN REMARK 500 10 ARG A 2 0.30 SIDE CHAIN REMARK 500 10 ARG A 22 0.29 SIDE CHAIN REMARK 500 10 ARG A 52 0.29 SIDE CHAIN REMARK 500 10 ARG A 58 0.31 SIDE CHAIN REMARK 500 11 ARG A 2 0.22 SIDE CHAIN REMARK 500 11 ARG A 22 0.26 SIDE CHAIN REMARK 500 11 ARG A 52 0.29 SIDE CHAIN REMARK 500 11 ARG A 58 0.32 SIDE CHAIN REMARK 500 12 ARG A 2 0.29 SIDE CHAIN REMARK 500 12 ARG A 22 0.30 SIDE CHAIN REMARK 500 12 ARG A 52 0.31 SIDE CHAIN REMARK 500 12 ARG A 58 0.22 SIDE CHAIN REMARK 500 13 ARG A 2 0.28 SIDE CHAIN REMARK 500 13 ARG A 22 0.29 SIDE CHAIN REMARK 500 REMARK 500 THIS ENTRY HAS 100 PLANE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: TRT001000207.1 RELATED DB: TARGETDB DBREF 1FEX A 1 59 UNP Q9NYB0 TE2IP_HUMAN 132 190 SEQRES 1 A 59 GLY ARG ILE ALA PHE THR ASP ALA ASP ASP VAL ALA ILE SEQRES 2 A 59 LEU THR TYR VAL LYS GLU ASN ALA ARG SER PRO SER SER SEQRES 3 A 59 VAL THR GLY ASN ALA LEU TRP LYS ALA MET GLU LYS SER SEQRES 4 A 59 SER LEU THR GLN HIS SER TRP GLN SER LEU LYS ASP ARG SEQRES 5 A 59 TYR LEU LYS HIS LEU ARG GLY HELIX 1 1 THR A 6 ASN A 20 1 15 HELIX 2 2 ARG A 22 VAL A 27 1 6 HELIX 3 3 ASN A 30 LYS A 38 1 9 HELIX 4 4 SER A 45 LEU A 57 1 13 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1