HEADER CONTRACTILE PROTEIN 01-AUG-00 1FHG TITLE HIGH RESOLUTION REFINEMENT OF TELOKIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: TELOKIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MELEAGRIS GALLOPAVO; SOURCE 3 ORGANISM_COMMON: TURKEY; SOURCE 4 ORGANISM_TAXID: 9103; SOURCE 5 TISSUE: GIZZARD KEYWDS IMMUNOGLOBULIN FOLD, BETA BARREL, CONTRACTILE PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR D.R.TOMCHICK,W.MINOR,A.KIYATKIN,K.LEWINSKI,A.V.SOMLYO,A.P.SOMLYO REVDAT 4 09-AUG-23 1FHG 1 REMARK REVDAT 3 13-APR-22 1FHG 1 AUTHOR REVDAT 2 24-FEB-09 1FHG 1 VERSN REVDAT 1 23-AUG-00 1FHG 0 JRNL AUTH H.M.HOLDEN,M.ITO,D.J.HARTSHORNE,I.RAYMENT JRNL TITL X-RAY STRUCTURE DETERMINATION OF TELOKIN, THE C-TERMINAL JRNL TITL 2 DOMAIN OF MYOSIN LIGHT CHAIN KINASE, AT 2.8 A RESOLUTION. JRNL REF J.MOL.BIOL. V. 227 840 1992 JRNL REFN ISSN 0022-2836 JRNL PMID 1404391 JRNL DOI 10.1016/0022-2836(92)90226-A REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.M.HOLDEN,M.ITO,D.J.HARTSHORNE,I.RAYMENT REMARK 1 TITL X-RAY STRUCTURE DETERMINATION OF TELOKIN, THE C-TERMINAL REMARK 1 TITL 2 DOMAIN OF MYOSIN LIGHT CHAIN KINASE, AT 2.8 ANGSTROMS REMARK 1 TITL 3 RESOLUTION REMARK 1 REF J.MOL.BIOL. V. 227 840 1992 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH A.V.SOMLYO,J.D.MATTHEW,X.WU,A.S.KHROMOV,A.P.SOMLYO REMARK 1 TITL REGULATION OF THE CROSS-BRIDGE CYCLE: THE EFFECTS OF MGADP, REMARK 1 TITL 2 LC17 ISOFORMS AND TELOKIN. REMARK 1 REF ACTA PHYSIOL.SCAND. V. 164 381 1998 REMARK 1 REFN ISSN 0001-6772 REMARK 1 DOI 10.1046/J.1365-201X.1998.00454.X REMARK 1 REFERENCE 3 REMARK 1 AUTH X.WU,T.A.HAYSTEAD,R.K.NAKAMOTO,A.V.SOMLYO,A.P.SOMLYO REMARK 1 TITL ACCELERATION OF MYOSIN LIGHT CHAIN DEPHOSPHORYLATION AND REMARK 1 TITL 2 RELAXATION OF SMOOTH MUSCLE BY TELOKIN. SYNERGISM WITH REMARK 1 TITL 3 CYCLIC NUCLEOTIDE-ACTIVATED KINASE. REMARK 1 REF J.BIOL.CHEM. V. 273 11362 1998 REMARK 1 REFN ISSN 0021-9258 REMARK 1 DOI 10.1074/JBC.273.18.11362 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 9598 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.210 REMARK 3 FREE R VALUE : 0.266 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 506 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 10 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.79 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 888 REMARK 3 BIN R VALUE (WORKING SET) : 0.2670 REMARK 3 BIN FREE R VALUE : 0.3020 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 49 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 796 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 82 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 47.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 42.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.80100 REMARK 3 B22 (A**2) : -2.80100 REMARK 3 B33 (A**2) : 5.60200 REMARK 3 B12 (A**2) : -4.62400 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.25 REMARK 3 ESD FROM SIGMAA (A) : 0.20 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.33 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.22 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.669 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.77 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.046 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.680 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.690 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.580 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 4.050 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : NULL REMARK 3 KSOL : 0.37 REMARK 3 BSOL : 52.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FHG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011590. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-SEP-97 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 4.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9904 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.980 REMARK 200 RESOLUTION RANGE LOW (A) : 20.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 10.50 REMARK 200 R MERGE (I) : 0.07000 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 35.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.98 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.6 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.57400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.340 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: IR REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1TLK REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 30.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG6000, SODIUM ACETATE, PH 4.0, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 273.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 39.24000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 19.62000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 19.62000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 39.24000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 277 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 279 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 1 REMARK 465 SER A 2 REMARK 465 GLY A 3 REMARK 465 MET A 4 REMARK 465 SER A 5 REMARK 465 GLY A 6 REMARK 465 ARG A 7 REMARK 465 LYS A 8 REMARK 465 ALA A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 SER A 12 REMARK 465 SER A 13 REMARK 465 PRO A 14 REMARK 465 THR A 15 REMARK 465 SER A 16 REMARK 465 PRO A 17 REMARK 465 ILE A 18 REMARK 465 ASN A 19 REMARK 465 ALA A 20 REMARK 465 ASN A 21 REMARK 465 LYS A 22 REMARK 465 VAL A 23 REMARK 465 GLU A 24 REMARK 465 ASN A 25 REMARK 465 GLU A 26 REMARK 465 ASP A 27 REMARK 465 ALA A 28 REMARK 465 PHE A 29 REMARK 465 LEU A 30 REMARK 465 GLU A 31 REMARK 465 GLU A 32 REMARK 465 VAL A 33 REMARK 465 GLY A 136 REMARK 465 LYS A 137 REMARK 465 GLU A 138 REMARK 465 GLY A 139 REMARK 465 GLU A 140 REMARK 465 GLY A 141 REMARK 465 GLU A 142 REMARK 465 GLY A 143 REMARK 465 GLU A 144 REMARK 465 GLY A 145 REMARK 465 GLU A 146 REMARK 465 GLU A 147 REMARK 465 ASP A 148 REMARK 465 GLU A 149 REMARK 465 GLU A 150 REMARK 465 GLU A 151 REMARK 465 GLU A 152 REMARK 465 GLU A 153 REMARK 465 GLU A 154 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 83 CG CD CE NZ REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1TLK RELATED DB: PDB REMARK 900 LOW RESOLUTION REFINEMENT DBREF 1FHG A 1 154 UNP P56276 MYLK_MELGA 1 154 SEQADV 1FHG GLU A 52 UNP P56276 ASP 52 SEE REMARK 999 SEQRES 1 A 154 ILE SER GLY MET SER GLY ARG LYS ALA SER GLY SER SER SEQRES 2 A 154 PRO THR SER PRO ILE ASN ALA ASN LYS VAL GLU ASN GLU SEQRES 3 A 154 ASP ALA PHE LEU GLU GLU VAL ALA GLU GLU LYS PRO HIS SEQRES 4 A 154 VAL LYS PRO TYR PHE THR LYS THR ILE LEU ASP MET GLU SEQRES 5 A 154 VAL VAL GLU GLY SER ALA ALA ARG PHE ASP CYS LYS VAL SEQRES 6 A 154 GLU GLY TYR PRO ASP PRO GLU VAL MET TRP PHE LYS ASP SEQRES 7 A 154 ASP ASN PRO VAL LYS GLU SER ARG HIS PHE GLN ILE ASP SEQRES 8 A 154 TYR ASP GLU GLU GLY ASN CYS SER LEU THR ILE SER GLU SEQRES 9 A 154 VAL CYS GLY ASP ASP ASP ALA LYS TYR THR CYS LYS ALA SEQRES 10 A 154 VAL ASN SER LEU GLY GLU ALA THR CYS THR ALA GLU LEU SEQRES 11 A 154 LEU VAL GLU THR MET GLY LYS GLU GLY GLU GLY GLU GLY SEQRES 12 A 154 GLU GLY GLU GLU ASP GLU GLU GLU GLU GLU GLU FORMUL 2 HOH *82(H2 O) HELIX 1 1 CYS A 106 ASP A 110 5 5 SHEET 1 A 4 VAL A 40 LYS A 46 0 SHEET 2 A 4 ALA A 59 TYR A 68 -1 N LYS A 64 O LYS A 46 SHEET 3 A 4 ASN A 97 ILE A 102 -1 N CYS A 98 O CYS A 63 SHEET 4 A 4 PHE A 88 TYR A 92 -1 O GLN A 89 N THR A 101 SHEET 1 B 5 MET A 51 VAL A 54 0 SHEET 2 B 5 GLY A 122 GLU A 133 1 O GLU A 129 N MET A 51 SHEET 3 B 5 ALA A 111 ASN A 119 -1 O ALA A 111 N LEU A 130 SHEET 4 B 5 GLU A 72 LYS A 77 -1 N GLU A 72 O VAL A 118 SHEET 5 B 5 ASN A 80 PRO A 81 -1 O ASN A 80 N LYS A 77 CISPEP 1 TYR A 68 PRO A 69 0 -0.23 CRYST1 63.710 63.710 58.860 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015696 0.009062 0.000000 0.00000 SCALE2 0.000000 0.018124 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016989 0.00000