HEADER SIGNALING PROTEIN 02-AUG-00 1FHO TITLE SOLUTION STRUCTURE OF THE PH DOMAIN FROM THE C. ELEGANS MUSCLE PROTEIN TITLE 2 UNC-89 COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNC-89; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: PLECKSTRIN HOMOLOGY (PH) DOMAIN; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CAENORHABDITIS ELEGANS; SOURCE 3 ORGANISM_TAXID: 6239; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 6 EXPRESSION_SYSTEM_PLASMID: PBAT4 KEYWDS PLECKSTRIN HOMOLOGY DOMAIN, ELECTROSTATICS, MUSCLE, SIGNAL KEYWDS 2 TRANSDUCTION, SIGNALING PROTEIN EXPDTA SOLUTION NMR NUMMDL 25 AUTHOR N.BLOMBERG,E.BARALDI,M.SATTLER,M.SARASTE,M.NILGES REVDAT 6 22-MAY-24 1FHO 1 REMARK REVDAT 5 21-DEC-22 1FHO 1 SEQADV REVDAT 4 23-FEB-22 1FHO 1 REMARK REVDAT 3 24-FEB-09 1FHO 1 VERSN REVDAT 2 20-DEC-00 1FHO 1 JRNL REVDAT 1 04-OCT-00 1FHO 0 JRNL AUTH N.BLOMBERG,E.BARALDI,M.SATTLER,M.SARASTE,M.NILGES JRNL TITL STRUCTURE OF A PH DOMAIN FROM THE C. ELEGANS MUSCLE PROTEIN JRNL TITL 2 UNC-89 SUGGESTS A NOVEL FUNCTION. JRNL REF STRUCTURE FOLD.DES. V. 8 1079 2000 JRNL REFN ISSN 0969-2126 JRNL PMID 11080629 JRNL DOI 10.1016/S0969-2126(00)00509-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH N.BLOMBERG,M.SATTLER,M.NILGES REMARK 1 TITL 1H, 15N, AND 13C RESONANCE ASSIGNMENT OF THE PH DOMAIN FROM REMARK 1 TITL 2 C. ELEGANS UNC-89 REMARK 1 REF J.BIOMOL.NMR V. 15 269 1999 REMARK 1 REFN ISSN 0925-2738 REMARK 1 DOI 10.1023/A:1008322528413 REMARK 1 REFERENCE 2 REMARK 1 AUTH N.BLOMBERG,R.R.GABDOULLINE,M.NILGES,R.C.WADE REMARK 1 TITL CLASSIFICATION OF PROTEIN SEQUENCES BY HOMOLOGY MODELLING REMARK 1 TITL 2 AND QUANTITATIVE ANALYSIS OF ELECTROSTATIC SIMILARITY REMARK 1 REF PROTEINS V. 37 379 1999 REMARK 1 REFN ISSN 0887-3585 REMARK 1 DOI 10.1002/(SICI)1097-0134(19991115)37:3<379::AID-PROT6>3.0.CO; REMARK 1 DOI 2 2-K REMARK 1 REFERENCE 3 REMARK 1 AUTH N.BLOMBERG,M.NILGES REMARK 1 TITL FUNCTIONAL DIVERSITY OF PH DOMAINS: AN EXHAUSTIVE MODELLING REMARK 1 TITL 2 STUDY REMARK 1 REF FOLD.DES. V. 2 343 1997 REMARK 1 REFN ISSN 1359-0278 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 2, CNS 0.5 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER ET AL (CNS) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURE WAS CALCULATED AUTOMATED REMARK 3 NOE ASSIGNMENT AND STRUCTURE CALCULATION USING ARIA/CNS. MANUAL REMARK 3 NOE ASSIGNMENTS WERE ADDED BETWEEN CYCLES OF AUTOMATED REMARK 3 ASSIGNMENT. THE FINAL STRUCTURES WERE REFINED IN A SHELL OF REMARK 3 EXPLICIT SOLVENT. DATA CONSISTED OF: 1230 UNIQUE NOE RESTAINTS; REMARK 3 44 PHI RESTRAINTS (3JHNHA SCALAR COUPLINGS, DIRECT REFINEMENT REMARK 3 AGAINST COUPLINGS); 41 1JHN RESIDUAL DIPOLAR COUPLINGS. FINAL REMARK 3 ENSEMBLE WAS REFINED IN EXPLICIT WATER. REMARK 4 REMARK 4 1FHO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011597. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 303; 303; 303 REMARK 210 PH : 6.8; 6.8; 6.8 REMARK 210 IONIC STRENGTH : 5MM; 5MM; 5MM REMARK 210 PRESSURE : AMBIENT; AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 800 UM UNC-89 PH DOMAIN 13C,15N; REMARK 210 5MM SODIUM PHOSPHATE; 800 UM UNC- REMARK 210 89 PH DOMAIN 15N; 5MM SODIUM REMARK 210 PHOSPHATE; 800 UM UNC-89 PH REMARK 210 DOMAIN 15N; 5MM SODIUM PHOSPHATE REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; HNHA; 15N_HSQC_ REMARK 210 NOT_DECOUPLED REMARK 210 SPECTROMETER FIELD STRENGTH : 600 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : DMX REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NMRPIPE 1.7, XEASY 1.3.13, ARIA REMARK 210 0.5, CNS 0.5 REMARK 210 METHOD USED : AUTOMATED NOE ASSIGNMENT,TORSION REMARK 210 ANGLE DYNAMICS, CARTESIAN REMARK 210 SIMULATED ANNEALING. REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 50 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 25 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: STRUCTURE DETERMINED USING TRIPLE RESONANCE NMR REMARK 210 TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HA GLU A 20 HB2 PHE A 86 1.23 REMARK 500 HB2 HIS A 13 HD1 PHE A 31 1.28 REMARK 500 HH11 ARG A 28 OE2 GLU A 41 1.59 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 17 ARG A 100 NE - CZ - NH1 ANGL. DEV. = -3.1 DEGREES REMARK 500 23 ARG A 100 NE - CZ - NH2 ANGL. DEV. = -3.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 THR A 4 58.46 -99.06 REMARK 500 1 ARG A 9 14.96 59.00 REMARK 500 1 ILE A 11 -88.61 -120.38 REMARK 500 1 ASP A 22 11.59 57.54 REMARK 500 1 PRO A 24 155.84 -39.53 REMARK 500 1 PRO A 25 150.03 -46.38 REMARK 500 1 ARG A 34 -88.24 60.27 REMARK 500 1 ASN A 35 18.15 -143.76 REMARK 500 1 GLU A 41 86.46 -69.67 REMARK 500 1 ALA A 44 38.49 -78.99 REMARK 500 1 THR A 46 -107.58 54.46 REMARK 500 1 SER A 47 -53.24 -137.63 REMARK 500 1 PRO A 49 -121.78 -58.17 REMARK 500 1 SER A 50 175.93 67.55 REMARK 500 1 LEU A 59 28.71 -67.57 REMARK 500 1 ASP A 60 -71.07 -102.30 REMARK 500 1 LYS A 61 55.04 -109.47 REMARK 500 1 THR A 68 -149.53 -141.44 REMARK 500 1 ASP A 70 -43.11 85.04 REMARK 500 1 PRO A 90 48.01 -72.71 REMARK 500 1 LYS A 91 37.21 -85.37 REMARK 500 1 ASP A 92 -77.89 -54.01 REMARK 500 1 PHE A 93 -114.78 -167.03 REMARK 500 1 GLU A 94 -99.81 -75.12 REMARK 500 1 SER A 96 -120.01 -160.52 REMARK 500 1 GLU A 97 -67.13 85.80 REMARK 500 1 GLU A 109 81.33 -161.63 REMARK 500 1 GLN A 111 105.73 73.17 REMARK 500 1 ALA A 115 -63.97 -90.20 REMARK 500 1 ALA A 116 115.54 -167.48 REMARK 500 2 ASP A 3 117.72 67.71 REMARK 500 2 ARG A 9 73.73 51.16 REMARK 500 2 ILE A 11 -86.27 -116.95 REMARK 500 2 HIS A 13 138.57 -175.36 REMARK 500 2 ASP A 14 -169.52 -171.60 REMARK 500 2 ARG A 34 -93.00 60.51 REMARK 500 2 ALA A 44 107.27 68.90 REMARK 500 2 THR A 46 -63.59 -104.24 REMARK 500 2 TYR A 51 -48.22 -146.66 REMARK 500 2 HIS A 53 -126.12 54.28 REMARK 500 2 ASP A 60 -73.69 -121.88 REMARK 500 2 LYS A 61 65.85 -104.18 REMARK 500 2 THR A 68 -96.25 -101.25 REMARK 500 2 THR A 69 -32.06 58.70 REMARK 500 2 ASP A 70 -49.27 -156.88 REMARK 500 2 LYS A 91 -90.10 -56.36 REMARK 500 2 SER A 96 -19.22 -172.78 REMARK 500 2 GLU A 109 42.95 -78.91 REMARK 500 2 GLN A 111 88.90 20.82 REMARK 500 3 LYS A 6 48.24 -89.54 REMARK 500 REMARK 500 THIS ENTRY HAS 552 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 34 0.08 SIDE CHAIN REMARK 500 2 ARG A 58 0.09 SIDE CHAIN REMARK 500 4 ARG A 9 0.08 SIDE CHAIN REMARK 500 7 ARG A 100 0.08 SIDE CHAIN REMARK 500 10 ARG A 28 0.08 SIDE CHAIN REMARK 500 11 ARG A 58 0.08 SIDE CHAIN REMARK 500 11 ARG A 105 0.07 SIDE CHAIN REMARK 500 16 ARG A 58 0.08 SIDE CHAIN REMARK 500 17 ARG A 28 0.08 SIDE CHAIN REMARK 500 17 ARG A 100 0.10 SIDE CHAIN REMARK 500 18 ARG A 28 0.10 SIDE CHAIN REMARK 500 18 ARG A 105 0.07 SIDE CHAIN REMARK 500 18 ARG A 118 0.09 SIDE CHAIN REMARK 500 19 ARG A 12 0.10 SIDE CHAIN REMARK 500 20 ARG A 9 0.09 SIDE CHAIN REMARK 500 21 ARG A 34 0.08 SIDE CHAIN REMARK 500 22 ARG A 100 0.09 SIDE CHAIN REMARK 500 23 ARG A 105 0.10 SIDE CHAIN REMARK 500 24 ARG A 28 0.10 SIDE CHAIN REMARK 500 24 ARG A 100 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1FHO A 2 119 UNP O01761 UNC89_CAEEL 341 458 SEQADV 1FHO MET A 1 UNP O01761 INITIATING METHIONINE SEQRES 1 A 119 MET GLY ASP THR GLY LYS LEU GLY ARG ILE ILE ARG HIS SEQRES 2 A 119 ASP ALA PHE GLN VAL TRP GLU GLY ASP GLU PRO PRO LYS SEQRES 3 A 119 LEU ARG TYR VAL PHE LEU PHE ARG ASN LYS ILE MET PHE SEQRES 4 A 119 THR GLU GLN ASP ALA SER THR SER PRO PRO SER TYR THR SEQRES 5 A 119 HIS TYR SER SER ILE ARG LEU ASP LYS TYR ASN ILE ARG SEQRES 6 A 119 GLN HIS THR THR ASP GLU ASP THR ILE VAL LEU GLN PRO SEQRES 7 A 119 GLN GLU PRO GLY LEU PRO SER PHE ARG ILE LYS PRO LYS SEQRES 8 A 119 ASP PHE GLU THR SER GLU TYR VAL ARG LYS ALA TRP LEU SEQRES 9 A 119 ARG ASP ILE ALA GLU GLU GLN GLU LYS TYR ALA ALA GLU SEQRES 10 A 119 ARG ASP HELIX 1 1 GLU A 97 GLU A 109 1 13 HELIX 2 2 GLN A 111 ALA A 116 1 6 SHEET 1 A 4 ARG A 12 VAL A 18 0 SHEET 2 A 4 LYS A 26 PHE A 33 -1 N LYS A 26 O VAL A 18 SHEET 3 A 4 LYS A 36 GLN A 42 -1 N LYS A 36 O PHE A 33 SHEET 4 A 4 SER A 56 ARG A 58 -1 N ILE A 57 O ILE A 37 SHEET 1 B 2 ASN A 63 HIS A 67 0 SHEET 2 B 2 THR A 73 GLN A 77 -1 O THR A 73 N HIS A 67 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1