HEADER ENDOCYTOSIS/EXOCYTOSIS 03-AUG-00 1FI6 TITLE SOLUTION STRUCTURE OF THE REPS1 EH DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: EH DOMAIN PROTEIN REPS1; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PGEX2T KEYWDS EPS15 HOMOLOGY DOMAIN, EF HAND, CALCIUM, RAS SIGNAL TRANSDUCTION, KEYWDS 2 ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA SOLUTION NMR NUMMDL 30 AUTHOR S.KIM,J.D.BALEJA REVDAT 4 23-FEB-22 1FI6 1 REMARK LINK REVDAT 3 24-FEB-09 1FI6 1 VERSN REVDAT 2 01-APR-03 1FI6 1 JRNL REVDAT 1 18-JUL-01 1FI6 0 JRNL AUTH S.KIM,D.N.CULLIS,L.A.FEIG,J.D.BALEJA JRNL TITL SOLUTION STRUCTURE OF THE REPS1 EH DOMAIN AND JRNL TITL 2 CHARACTERIZATION OF ITS BINDING TO NPF TARGET SEQUENCES. JRNL REF BIOCHEMISTRY V. 40 6776 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11389591 JRNL DOI 10.1021/BI002700M REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.KIM REMARK 1 TITL CHAPTER 3: STUDIES OF PROTEIN STRUCTURE AND INTERACTION REMARK 1 TITL 2 USING NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY:APPLICATIONS REMARK 1 TITL 3 TO THE REPS1 EH DOMAIN AND MICROCINB17 PROPEPTIDE REMARK 1 REF THESIS 2000 REMARK 1 PUBL TUFTS UNIVERSITY MEDICAL SCHOOL REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : XWINNMR 1.7, X-PLOR 3.1 REMARK 3 AUTHORS : BRUKER (XWINNMR), BRUNGER/BIOSYM (X-PLOR) REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 1265 RESTRAINTS, 1143 ARE NOE-DERIVED DISTANCE CONSTRAINTS, 122 REMARK 3 DIHEDRAL ANGLE RESTRAINTS. REMARK 4 REMARK 4 1FI6 COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011612. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 30 REMARK 210 PH : 6.8 REMARK 210 IONIC STRENGTH : 10MM NACL REMARK 210 PRESSURE : AMBIENT REMARK 210 SAMPLE CONTENTS : 1MM REPS1 EH DOMAIN U-15N,13C; REMARK 210 10MM D-IMIDAZOLE BUFFER, 1.5MM REMARK 210 CACL2; 90% H2O, 10% D2O; 1MM REMARK 210 REPS1 EH DOMAIN U-15N; 10MM D- REMARK 210 IMIDAZOLE BUFFER, 1.5MM CACL2; REMARK 210 90% H2O, 10% D2O; 1MM REPS1 EH REMARK 210 DOMAIN; 10MM D-IMIDAZOLE BUFFER, REMARK 210 1.5MM CACL2 REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 3D_13C-SEPARATED_NOESY; 3D_15N REMARK 210 -SEPARATED_NOESY; 2D NOESY; DQF- REMARK 210 COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ; 600 MHZ REMARK 210 SPECTROMETER MODEL : AMX; AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : XWINNMR 1.7, FELIX 1.1.2, X-PLOR REMARK 210 3.1 REMARK 210 METHOD USED : SIMULATED ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 40 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 30 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LOWEST REMARK 210 ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 1 REMARK 210 REMARK 210 REMARK: THE STRUCTURE WAS DETERMINED USING HETERONUCLEAR 2D AND 3D REMARK 210 NMR SPECTROSCOPY. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 LEU A 27 25.48 -67.54 REMARK 500 1 LYS A 44 -55.01 163.52 REMARK 500 1 ILE A 47 -37.39 -38.95 REMARK 500 1 ASP A 58 59.98 -98.77 REMARK 500 1 PHE A 59 -19.49 -47.76 REMARK 500 1 ASN A 82 51.02 -140.82 REMARK 500 1 PRO A 87 -145.55 -72.66 REMARK 500 1 GLU A 88 77.85 -174.36 REMARK 500 1 SER A 93 36.48 -141.61 REMARK 500 1 LEU A 94 49.69 -142.62 REMARK 500 1 PRO A 96 67.80 -61.73 REMARK 500 2 ASN A 28 41.83 -97.67 REMARK 500 2 LYS A 61 41.63 82.63 REMARK 500 2 ASN A 82 47.28 173.85 REMARK 500 2 ASP A 85 154.00 -45.24 REMARK 500 2 GLU A 92 -138.16 -99.24 REMARK 500 3 LYS A 7 128.99 -171.23 REMARK 500 3 GLN A 24 72.33 -114.88 REMARK 500 3 LEU A 27 -16.38 -48.36 REMARK 500 3 ASN A 28 39.77 -95.52 REMARK 500 3 ASP A 58 53.77 -99.08 REMARK 500 3 TYR A 84 111.44 39.49 REMARK 500 3 PRO A 87 -140.11 -75.02 REMARK 500 3 LYS A 89 -44.45 -165.30 REMARK 500 3 GLU A 92 0.36 -53.34 REMARK 500 3 LEU A 94 52.37 -141.18 REMARK 500 3 PRO A 96 -178.02 -64.78 REMARK 500 4 LYS A 7 96.95 -64.63 REMARK 500 4 GLN A 24 54.28 -105.97 REMARK 500 4 SER A 34 -75.64 -92.36 REMARK 500 4 LYS A 44 -40.08 151.33 REMARK 500 4 ILE A 47 -33.32 -38.56 REMARK 500 4 ASP A 58 51.20 -96.35 REMARK 500 4 PHE A 59 -8.59 -54.89 REMARK 500 4 LYS A 61 49.79 71.45 REMARK 500 4 ASN A 82 57.51 -168.22 REMARK 500 4 GLU A 88 68.61 157.41 REMARK 500 4 SER A 93 -115.53 -137.50 REMARK 500 4 MET A 95 97.21 -30.38 REMARK 500 4 PRO A 96 57.45 -69.01 REMARK 500 5 LYS A 7 126.65 69.83 REMARK 500 5 ASP A 26 29.25 -160.58 REMARK 500 5 LEU A 27 -139.43 -90.27 REMARK 500 5 LYS A 44 -54.27 165.96 REMARK 500 5 LEU A 48 -75.08 -45.73 REMARK 500 5 ASP A 58 49.11 -98.74 REMARK 500 5 PHE A 59 -4.69 -52.76 REMARK 500 5 TYR A 84 -36.53 -156.73 REMARK 500 5 LEU A 86 104.83 68.30 REMARK 500 5 GLU A 88 59.11 -66.15 REMARK 500 REMARK 500 THIS ENTRY HAS 298 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 100 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 58 OD1 REMARK 620 2 ASP A 60 OD1 71.5 REMARK 620 3 ASP A 60 OD2 103.2 59.7 REMARK 620 4 ASP A 62 OD1 91.3 69.8 118.2 REMARK 620 5 ASP A 62 OD2 129.7 78.7 95.1 39.7 REMARK 620 6 ALA A 64 O 112.3 137.5 144.0 67.9 66.8 REMARK 620 7 GLU A 69 OE1 80.5 144.2 107.6 134.1 137.1 73.8 REMARK 620 8 GLU A 69 OE2 131.8 131.6 72.7 133.9 98.3 79.2 57.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 100 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4788 RELATED DB: BMRB REMARK 900 BMRB-4788 IS 1H, 13C, AND 15N RESONANCE ASSIGNMENTS DBREF 1FI6 A 6 97 UNP O54916 REPS1_MOUSE 227 318 SEQRES 1 A 92 TRP LYS ILE THR ASP GLU GLN ARG GLN TYR TYR VAL ASN SEQRES 2 A 92 GLN PHE LYS THR ILE GLN PRO ASP LEU ASN GLY PHE ILE SEQRES 3 A 92 PRO GLY SER ALA ALA LYS GLU PHE PHE THR LYS SER LYS SEQRES 4 A 92 LEU PRO ILE LEU GLU LEU SER HIS ILE TRP GLU LEU SER SEQRES 5 A 92 ASP PHE ASP LYS ASP GLY ALA LEU THR LEU ASP GLU PHE SEQRES 6 A 92 CYS ALA ALA PHE HIS LEU VAL VAL ALA ARG LYS ASN GLY SEQRES 7 A 92 TYR ASP LEU PRO GLU LYS LEU PRO GLU SER LEU MET PRO SEQRES 8 A 92 LYS HET CA A 100 1 HETNAM CA CALCIUM ION FORMUL 2 CA CA 2+ HELIX 1 1 THR A 9 LYS A 21 1 13 HELIX 2 2 GLY A 33 LYS A 44 1 12 HELIX 3 3 PRO A 46 ASP A 58 1 13 HELIX 4 4 LEU A 67 GLY A 83 1 17 SHEET 1 A 2 PHE A 30 PRO A 32 0 SHEET 2 A 2 ALA A 64 THR A 66 -1 N LEU A 65 O ILE A 31 LINK OD1 ASP A 58 CA CA A 100 1555 1555 2.09 LINK OD1 ASP A 60 CA CA A 100 1555 1555 2.21 LINK OD2 ASP A 60 CA CA A 100 1555 1555 2.15 LINK OD1 ASP A 62 CA CA A 100 1555 1555 2.10 LINK OD2 ASP A 62 CA CA A 100 1555 1555 3.36 LINK O ALA A 64 CA CA A 100 1555 1555 2.19 LINK OE1 GLU A 69 CA CA A 100 1555 1555 2.27 LINK OE2 GLU A 69 CA CA A 100 1555 1555 2.28 SITE 1 AC1 5 ASP A 58 ASP A 60 ASP A 62 ALA A 64 SITE 2 AC1 5 GLU A 69 CRYST1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1