HEADER SUGAR BINDING PROTEIN 03-AUG-00 1FIF TITLE N-ACETYLGALACTOSAMINE-SELECTIVE MUTANT OF MANNOSE-BINDING PROTEIN-A TITLE 2 (QPDWG-HDRPY) COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-BINDING PROTEIN-A; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 73-226; COMPND 5 SYNONYM: MBP-A, MANNAN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_PLASMID: PINIIIOMPA2 KEYWDS LECTIN, C-TYPE LECTIN, CALCIUM-BINDING PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,D.TORGERSEN,K.DRICKAMER,W.I.WEIS REVDAT 6 03-NOV-21 1FIF 1 REMARK SEQADV LINK REVDAT 5 14-MAR-18 1FIF 1 SEQADV REVDAT 4 24-FEB-09 1FIF 1 VERSN REVDAT 3 01-APR-03 1FIF 1 JRNL REVDAT 2 10-JAN-01 1FIF 1 JRNL REVDAT 1 23-AUG-00 1FIF 0 JRNL AUTH H.FEINBERG,D.TORGERSEN,K.DRICKAMER,W.I.WEIS JRNL TITL MECHANISM OF PH-DEPENDENT N-ACETYLGALACTOSAMINE BINDING BY A JRNL TITL 2 FUNCTIONAL MIMIC OF THE HEPATOCYTE ASIALOGLYCOPROTEIN JRNL TITL 3 RECEPTOR. JRNL REF J.BIOL.CHEM. V. 275 35176 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10931846 JRNL DOI 10.1074/JBC.M005557200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.68 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1848493.640 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.5 REMARK 3 NUMBER OF REFLECTIONS : 41932 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.193 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.200 REMARK 3 FREE R VALUE TEST SET COUNT : 3455 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6060 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.2700 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 529 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.012 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 11 REMARK 3 SOLVENT ATOMS : 414 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 23.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.27000 REMARK 3 B22 (A**2) : -2.35000 REMARK 3 B33 (A**2) : 2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 2.30000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.14 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.780 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.370 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.070 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.480 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.660 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.33 REMARK 3 BSOL : 45.46 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FIF COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 10-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011616. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42884 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.7 REMARK 200 DATA REDUNDANCY : 7.400 REMARK 200 R MERGE (I) : 0.05300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 93.0 REMARK 200 DATA REDUNDANCY IN SHELL : 2.60 REMARK 200 R MERGE FOR SHELL (I) : 0.15700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.5% GOLYETHYLENE GLYCOL 8,000, 100 REMARK 280 MM TRIS-HCL, 10 MM NACL, 20 MM CACL2, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.17000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.41650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.17000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.41650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER. REMARK 300 THE COMPLETE TRIMER IS CONTAINED IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 6940 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22840 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -163.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 152 -4.71 66.88 REMARK 500 THR A 177 -86.44 -114.86 REMARK 500 LYS B 152 -4.80 67.02 REMARK 500 ASN B 180 52.40 -143.67 REMARK 500 LYS C 152 -47.04 74.79 REMARK 500 ASN C 180 47.89 -148.27 REMARK 500 ASN C 206 8.04 86.37 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ASP A 161 OD2 50.6 REMARK 620 3 GLU A 165 OE2 125.6 75.9 REMARK 620 4 GLU A 165 OE1 104.4 80.0 50.4 REMARK 620 5 ASP A 188 OD1 155.7 152.2 76.3 81.1 REMARK 620 6 GLU A 198 O 87.0 130.4 144.4 143.0 75.7 REMARK 620 7 ASP A 199 OD1 72.3 105.5 121.4 71.8 87.5 78.8 REMARK 620 8 HOH A 554 O 98.9 85.2 83.8 133.9 93.6 76.5 154.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 185 OE1 REMARK 620 2 ASP A 187 OD1 73.6 REMARK 620 3 GLU A 198 OE1 149.8 79.7 REMARK 620 4 ASN A 210 OD1 63.2 135.7 144.6 REMARK 620 5 ASP A 211 O 121.6 144.6 74.6 72.7 REMARK 620 6 ASP A 211 OD1 72.2 83.0 90.9 92.6 73.7 REMARK 620 7 HOH A 439 O 82.3 71.1 102.4 93.0 137.8 148.0 REMARK 620 8 HOH A 444 O 122.3 123.6 84.4 75.9 77.7 151.2 60.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE2 REMARK 620 2 GLU A 165 OE1 88.8 REMARK 620 3 ASP A 199 OD1 158.9 72.8 REMARK 620 4 ASP A 199 OD2 150.0 118.0 51.0 REMARK 620 5 HOH A 416 O 85.3 91.1 104.9 81.4 REMARK 620 6 HOH A 555 O 101.1 81.3 66.7 96.3 170.0 REMARK 620 7 HOH A 558 O 74.5 163.3 123.8 78.1 86.6 102.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 557 O REMARK 620 2 GLU C 84 OE2 92.7 REMARK 620 3 GLU C 165 OE1 87.3 88.2 REMARK 620 4 ASP C 199 OD1 74.7 157.4 72.8 REMARK 620 5 ASP C 199 OD2 95.7 149.6 121.3 52.2 REMARK 620 6 HOH C 535 O 177.6 86.4 90.5 105.4 86.2 REMARK 620 7 HOH C 536 O 91.2 77.4 165.5 120.7 73.2 90.8 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 161 OD1 REMARK 620 2 ASP B 161 OD2 50.8 REMARK 620 3 GLU B 165 OE1 111.8 80.4 REMARK 620 4 GLU B 165 OE2 126.4 75.7 51.9 REMARK 620 5 ASP B 188 OD2 154.4 151.0 74.3 77.6 REMARK 620 6 GLU B 198 O 89.1 135.3 140.3 138.4 73.4 REMARK 620 7 ASP B 199 OD1 73.8 102.9 75.4 127.1 84.4 79.1 REMARK 620 8 HOH B 364 O 93.5 84.8 130.4 78.6 100.9 78.3 154.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 185 OE1 REMARK 620 2 ASP B 187 OD1 83.6 REMARK 620 3 GLU B 198 OE1 149.1 90.0 REMARK 620 4 ASP B 211 O 103.0 157.2 73.0 REMARK 620 5 ASP B 211 OD1 69.5 83.7 79.8 78.5 REMARK 620 6 HOH B 275 O 136.0 88.0 73.6 101.2 152.1 REMARK 620 7 HOH B 363 O 74.1 112.7 135.4 90.2 138.0 69.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 165 OE1 REMARK 620 2 ASP B 199 OD1 76.2 REMARK 620 3 ASP B 199 OD2 123.8 51.2 REMARK 620 4 HOH B 231 O 85.2 76.2 98.3 REMARK 620 5 HOH B 362 O 161.2 120.6 74.9 90.8 REMARK 620 6 HOH B 365 O 93.2 107.2 85.9 175.8 89.5 REMARK 620 7 HOH B 366 O 89.2 159.0 146.7 87.7 72.2 88.4 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 161 OD1 REMARK 620 2 ASP C 161 OD2 48.1 REMARK 620 3 GLU C 165 OE1 106.2 83.5 REMARK 620 4 GLU C 165 OE2 124.5 77.1 51.3 REMARK 620 5 ASP C 188 OD1 154.0 155.9 79.1 79.1 REMARK 620 6 GLU C 198 O 86.7 127.7 142.1 144.8 75.2 REMARK 620 7 ASP C 199 OD1 72.5 105.0 72.4 123.3 85.5 78.3 REMARK 620 8 HOH C 534 O 97.4 85.8 136.4 85.1 95.3 73.9 151.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 185 OE1 REMARK 620 2 ASP C 187 OD1 78.4 REMARK 620 3 GLU C 198 OE2 165.4 109.7 REMARK 620 4 GLU C 198 OE1 153.8 79.4 40.1 REMARK 620 5 ASN C 210 OD1 54.7 131.8 114.1 148.8 REMARK 620 6 ASP C 211 O 114.1 142.7 67.1 76.8 75.3 REMARK 620 7 ASP C 211 OD1 74.3 80.1 118.4 88.2 95.8 70.9 REMARK 620 8 HOH C 428 O 83.4 70.9 87.8 102.4 91.4 142.4 146.4 REMARK 620 9 HOH C 459 O 111.0 126.9 54.4 93.6 69.4 83.1 152.9 59.3 REMARK 620 N 1 2 3 4 5 6 7 8 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 415 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 2 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 3 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL C 416 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FIH RELATED DB: PDB DBREF 1FIF A 73 226 UNP P19999 MBL1_RAT 90 238 DBREF 1FIF B 73 226 UNP P19999 MBL1_RAT 90 238 DBREF 1FIF C 73 226 UNP P19999 MBL1_RAT 90 238 SEQADV 1FIF GLN A 185 UNP P19999 GLU 202 ENGINEERED MUTATION SEQADV 1FIF ASP A 187 UNP P19999 ASN 204 ENGINEERED MUTATION SEQADV 1FIF TRP A 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1FIF TRP A 181 UNP P19999 INSERTION SEQADV 1FIF GLY A 191 UNP P19999 INSERTION SEQADV 1FIF HIS A 192 UNP P19999 INSERTION SEQADV 1FIF GLY A 193 UNP P19999 INSERTION SEQADV 1FIF LEU A 194 UNP P19999 INSERTION SEQADV 1FIF GLY A 196 UNP P19999 SER 208 ENGINEERED MUTATION SEQADV 1FIF HIS A 202 UNP P19999 THR 214 ENGINEERED MUTATION SEQADV 1FIF ASP A 212 UNP P19999 ILE 224 ENGINEERED MUTATION SEQADV 1FIF ARG A 216 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 1FIF PRO A 217 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 1FIF TYR A 218 UNP P19999 HIS 230 ENGINEERED MUTATION SEQADV 1FIF GLN B 185 UNP P19999 GLU 202 ENGINEERED MUTATION SEQADV 1FIF ASP B 187 UNP P19999 ASN 204 ENGINEERED MUTATION SEQADV 1FIF TRP B 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1FIF TRP B 181 UNP P19999 INSERTION SEQADV 1FIF GLY B 191 UNP P19999 INSERTION SEQADV 1FIF HIS B 192 UNP P19999 INSERTION SEQADV 1FIF GLY B 193 UNP P19999 INSERTION SEQADV 1FIF LEU B 194 UNP P19999 INSERTION SEQADV 1FIF GLY B 196 UNP P19999 SER 208 ENGINEERED MUTATION SEQADV 1FIF HIS B 202 UNP P19999 THR 214 ENGINEERED MUTATION SEQADV 1FIF ASP B 212 UNP P19999 ILE 224 ENGINEERED MUTATION SEQADV 1FIF ARG B 216 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 1FIF PRO B 217 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 1FIF TYR B 218 UNP P19999 HIS 230 ENGINEERED MUTATION SEQADV 1FIF GLN C 185 UNP P19999 GLU 202 ENGINEERED MUTATION SEQADV 1FIF ASP C 187 UNP P19999 ASN 204 ENGINEERED MUTATION SEQADV 1FIF TRP C 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1FIF TRP C 181 UNP P19999 INSERTION SEQADV 1FIF GLY C 191 UNP P19999 INSERTION SEQADV 1FIF HIS C 192 UNP P19999 INSERTION SEQADV 1FIF GLY C 193 UNP P19999 INSERTION SEQADV 1FIF LEU C 194 UNP P19999 INSERTION SEQADV 1FIF GLY C 196 UNP P19999 SER 208 ENGINEERED MUTATION SEQADV 1FIF HIS C 202 UNP P19999 THR 214 ENGINEERED MUTATION SEQADV 1FIF ASP C 212 UNP P19999 ILE 224 ENGINEERED MUTATION SEQADV 1FIF ARG C 216 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 1FIF PRO C 217 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 1FIF TYR C 218 UNP P19999 HIS 230 ENGINEERED MUTATION SEQRES 1 A 154 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 A 154 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 A 154 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 A 154 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 A 154 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 A 154 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 A 154 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 A 154 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 A 154 THR TYR SER ASN TRP LYS LYS ASP GLN PRO ASP ASP TRP SEQRES 10 A 154 TYR GLY HIS GLY LEU GLY GLY GLY GLU ASP CYS VAL HIS SEQRES 11 A 154 ILE VAL ASP ASN GLY LEU TRP ASN ASP ASP SER CYS GLN SEQRES 12 A 154 ARG PRO TYR THR ALA VAL CYS GLU PHE PRO ALA SEQRES 1 B 154 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 B 154 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 B 154 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 B 154 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 B 154 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 B 154 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 B 154 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 B 154 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 B 154 THR TYR SER ASN TRP LYS LYS ASP GLN PRO ASP ASP TRP SEQRES 10 B 154 TYR GLY HIS GLY LEU GLY GLY GLY GLU ASP CYS VAL HIS SEQRES 11 B 154 ILE VAL ASP ASN GLY LEU TRP ASN ASP ASP SER CYS GLN SEQRES 12 B 154 ARG PRO TYR THR ALA VAL CYS GLU PHE PRO ALA SEQRES 1 C 154 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 C 154 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 C 154 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 C 154 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 C 154 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 C 154 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 C 154 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 C 154 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 C 154 THR TYR SER ASN TRP LYS LYS ASP GLN PRO ASP ASP TRP SEQRES 10 C 154 TYR GLY HIS GLY LEU GLY GLY GLY GLU ASP CYS VAL HIS SEQRES 11 C 154 ILE VAL ASP ASN GLY LEU TRP ASN ASP ASP SER CYS GLN SEQRES 12 C 154 ARG PRO TYR THR ALA VAL CYS GLU PHE PRO ALA HET CA A 1 1 HET CA A 2 1 HET CA A 3 1 HET CL A 415 1 HET CA B 1 1 HET CA B 2 1 HET CA B 3 1 HET CA C 1 1 HET CA C 2 1 HET CA C 3 1 HET CL C 416 1 HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION FORMUL 4 CA 9(CA 2+) FORMUL 7 CL 2(CL 1-) FORMUL 15 HOH *414(H2 O) HELIX 1 1 ALA A 73 MET A 103 1 31 HELIX 2 2 PRO A 120 LEU A 131 1 12 HELIX 3 3 ASN A 140 LYS A 152 1 13 HELIX 4 4 ALA B 73 MET B 103 1 31 HELIX 5 5 PRO B 120 LEU B 131 1 12 HELIX 6 6 ASN B 140 LYS B 152 1 13 HELIX 7 7 ALA C 73 MET C 103 1 31 HELIX 8 8 PRO C 120 LEU C 131 1 12 HELIX 9 9 ASN C 140 LYS C 152 1 13 HELIX 10 10 ASP C 205 GLY C 207 5 3 SHEET 1 A 3 PHE A 111 MET A 119 0 SHEET 2 A 3 TYR A 218 PHE A 224 -1 O TYR A 218 N MET A 119 SHEET 3 A 3 THR A 134 VAL A 135 -1 O THR A 134 N GLU A 223 SHEET 1 B 4 MET A 169 TYR A 170 0 SHEET 2 B 4 ALA A 155 THR A 160 -1 O THR A 160 N MET A 169 SHEET 3 B 4 CYS A 200 ILE A 203 -1 O VAL A 201 N LEU A 157 SHEET 4 B 4 TRP A 209 ASP A 212 -1 O ASN A 210 N HIS A 202 SHEET 1 C 3 PHE B 111 MET B 119 0 SHEET 2 C 3 TYR B 218 PHE B 224 -1 O TYR B 218 N MET B 119 SHEET 3 C 3 THR B 134 VAL B 135 -1 O THR B 134 N GLU B 223 SHEET 1 D 4 MET B 169 TYR B 170 0 SHEET 2 D 4 ALA B 155 THR B 160 -1 O THR B 160 N MET B 169 SHEET 3 D 4 CYS B 200 ILE B 203 -1 O VAL B 201 N LEU B 157 SHEET 4 D 4 TRP B 209 ASP B 212 -1 O ASN B 210 N HIS B 202 SHEET 1 E 3 PHE C 111 MET C 119 0 SHEET 2 E 3 TYR C 218 PHE C 224 -1 N TYR C 218 O MET C 119 SHEET 3 E 3 THR C 134 VAL C 135 -1 O THR C 134 N GLU C 223 SHEET 1 F 4 MET C 169 TYR C 170 0 SHEET 2 F 4 PHE C 156 THR C 160 -1 O THR C 160 N MET C 169 SHEET 3 F 4 CYS C 200 ILE C 203 -1 O VAL C 201 N LEU C 157 SHEET 4 F 4 TRP C 209 ASP C 212 -1 O ASN C 210 N HIS C 202 SSBOND 1 CYS A 128 CYS A 222 1555 1555 2.03 SSBOND 2 CYS A 200 CYS A 214 1555 1555 2.03 SSBOND 3 CYS B 128 CYS B 222 1555 1555 2.03 SSBOND 4 CYS B 200 CYS B 214 1555 1555 2.03 SSBOND 5 CYS C 128 CYS C 222 1555 1555 2.04 SSBOND 6 CYS C 200 CYS C 214 1555 1555 2.03 LINK CA CA A 1 OD1 ASP A 161 1555 1555 2.70 LINK CA CA A 1 OD2 ASP A 161 1555 1555 2.36 LINK CA CA A 1 OE2 GLU A 165 1555 1555 2.54 LINK CA CA A 1 OE1 GLU A 165 1555 1555 2.61 LINK CA CA A 1 OD1 ASP A 188 1555 1555 2.56 LINK CA CA A 1 O GLU A 198 1555 1555 2.42 LINK CA CA A 1 OD1 ASP A 199 1555 1555 2.40 LINK CA CA A 1 O HOH A 554 1555 1555 2.33 LINK CA CA A 2 OE1 GLN A 185 1555 1555 2.55 LINK CA CA A 2 OD1 ASP A 187 1555 1555 2.41 LINK CA CA A 2 OE1 GLU A 198 1555 1555 2.29 LINK CA CA A 2 OD1 ASN A 210 1555 1555 2.55 LINK CA CA A 2 O ASP A 211 1555 1555 2.46 LINK CA CA A 2 OD1 ASP A 211 1555 1555 2.29 LINK CA CA A 2 O HOH A 439 1555 1555 2.62 LINK CA CA A 2 O HOH A 444 1555 1555 2.75 LINK CA CA A 3 OE2 GLU A 84 1555 1555 2.37 LINK CA CA A 3 OE1 GLU A 165 1555 3455 2.30 LINK CA CA A 3 OD1 ASP A 199 1555 3455 2.64 LINK CA CA A 3 OD2 ASP A 199 1555 3455 2.44 LINK CA CA A 3 O HOH A 416 1555 1555 2.25 LINK CA CA A 3 O HOH A 555 1555 3455 2.26 LINK CA CA A 3 O HOH A 558 1555 1555 2.39 LINK O HOH A 557 CA CA C 3 1555 1555 2.31 LINK CA CA B 1 OD1 ASP B 161 1555 1555 2.72 LINK CA CA B 1 OD2 ASP B 161 1555 1555 2.35 LINK CA CA B 1 OE1 GLU B 165 1555 1555 2.52 LINK CA CA B 1 OE2 GLU B 165 1555 1555 2.50 LINK CA CA B 1 OD2 ASP B 188 1555 1555 2.73 LINK CA CA B 1 O GLU B 198 1555 1555 2.46 LINK CA CA B 1 OD1 ASP B 199 1555 1555 2.38 LINK CA CA B 1 O HOH B 364 1555 1555 2.27 LINK CA CA B 2 OE1 GLN B 185 1555 1555 2.49 LINK CA CA B 2 OD1 ASP B 187 1555 1555 2.37 LINK CA CA B 2 OE1 GLU B 198 1555 1555 2.29 LINK CA CA B 2 O ASP B 211 1555 1555 2.32 LINK CA CA B 2 OD1 ASP B 211 1555 1555 2.25 LINK CA CA B 2 O HOH B 275 1555 1555 2.54 LINK CA CA B 2 O HOH B 363 1555 1555 2.38 LINK CA CA B 3 OE1 GLU B 165 1555 1555 2.32 LINK CA CA B 3 OD1 ASP B 199 1555 1555 2.53 LINK CA CA B 3 OD2 ASP B 199 1555 1555 2.56 LINK CA CA B 3 O HOH B 231 1555 1555 2.37 LINK CA CA B 3 O HOH B 362 1555 1555 2.33 LINK CA CA B 3 O HOH B 365 1555 1555 2.25 LINK CA CA B 3 O HOH B 366 1555 1555 2.40 LINK CA CA C 1 OD1 ASP C 161 1555 1555 2.86 LINK CA CA C 1 OD2 ASP C 161 1555 1555 2.44 LINK CA CA C 1 OE1 GLU C 165 1555 1555 2.59 LINK CA CA C 1 OE2 GLU C 165 1555 1555 2.48 LINK CA CA C 1 OD1 ASP C 188 1555 1555 2.45 LINK CA CA C 1 O GLU C 198 1555 1555 2.46 LINK CA CA C 1 OD1 ASP C 199 1555 1555 2.30 LINK CA CA C 1 O HOH C 534 1555 1555 2.29 LINK CA CA C 2 OE1 GLN C 185 1555 1555 2.40 LINK CA CA C 2 OD1 ASP C 187 1555 1555 2.43 LINK CA CA C 2 OE2 GLU C 198 1555 1555 3.37 LINK CA CA C 2 OE1 GLU C 198 1555 1555 2.30 LINK CA CA C 2 OD1AASN C 210 1555 1555 2.80 LINK CA CA C 2 O ASP C 211 1555 1555 2.46 LINK CA CA C 2 OD1 ASP C 211 1555 1555 2.21 LINK CA CA C 2 O HOH C 428 1555 1555 2.89 LINK CA CA C 2 O HOH C 459 1555 1555 2.27 LINK CA CA C 3 OE2 GLU C 84 1555 1555 2.35 LINK CA CA C 3 OE1 GLU C 165 1555 3445 2.29 LINK CA CA C 3 OD1 ASP C 199 1555 3445 2.57 LINK CA CA C 3 OD2 ASP C 199 1555 3445 2.38 LINK CA CA C 3 O HOH C 535 1555 1555 2.29 LINK CA CA C 3 O HOH C 536 1555 1555 2.41 CISPEP 1 GLN A 185 PRO A 186 0 -0.05 CISPEP 2 GLN B 185 PRO B 186 0 -0.10 CISPEP 3 GLN C 185 PRO C 186 0 -0.16 SITE 1 AC1 6 ASP A 161 GLU A 165 ASP A 188 GLU A 198 SITE 2 AC1 6 ASP A 199 HOH A 554 SITE 1 AC2 7 GLN A 185 ASP A 187 GLU A 198 ASN A 210 SITE 2 AC2 7 ASP A 211 HOH A 439 HOH A 444 SITE 1 AC3 6 GLU A 84 GLU A 165 ASP A 199 HOH A 416 SITE 2 AC3 6 HOH A 555 HOH A 558 SITE 1 AC4 5 ASP A 199 SER A 213 CYS A 214 HOH A 516 SITE 2 AC4 5 HOH A 556 SITE 1 AC5 6 ASP B 161 GLU B 165 ASP B 188 GLU B 198 SITE 2 AC5 6 ASP B 199 HOH B 364 SITE 1 AC6 6 GLN B 185 ASP B 187 GLU B 198 ASP B 211 SITE 2 AC6 6 HOH B 275 HOH B 363 SITE 1 AC7 6 GLU B 165 ASP B 199 HOH B 231 HOH B 362 SITE 2 AC7 6 HOH B 365 HOH B 366 SITE 1 AC8 6 ASP C 161 GLU C 165 ASP C 188 GLU C 198 SITE 2 AC8 6 ASP C 199 HOH C 534 SITE 1 AC9 7 GLN C 185 ASP C 187 GLU C 198 ASN C 210 SITE 2 AC9 7 ASP C 211 HOH C 428 HOH C 459 SITE 1 BC1 6 HOH A 557 GLU C 84 GLU C 165 ASP C 199 SITE 2 BC1 6 HOH C 535 HOH C 536 SITE 1 BC2 2 ASP C 199 CYS C 214 CRYST1 80.340 84.833 97.142 90.00 107.88 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012447 0.000000 0.004015 0.00000 SCALE2 0.000000 0.011788 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010817 0.00000