HEADER IMMUNOGLOBULIN 07-JAN-94 1FIG TITLE ROUTES TO CATALYSIS: STRUCTURE OF A CATALYTIC ANTIBODY AND TITLE 2 COMPARISON WITH ITS NATURAL COUNTERPART COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG1-KAPPA 1F7 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG1-KAPPA 1F7 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 8 ORGANISM_TAXID: 10090 KEYWDS IMMUNOGLOBULIN EXPDTA X-RAY DIFFRACTION AUTHOR M.R.HAYNES,E.A.STURA,D.HILVERT,I.A.WILSON REVDAT 3 25-AUG-09 1FIG 1 SOURCE REVDAT 2 24-FEB-09 1FIG 1 VERSN REVDAT 1 31-MAY-94 1FIG 0 JRNL AUTH M.R.HAYNES,E.A.STURA,D.HILVERT,I.A.WILSON JRNL TITL ROUTES TO CATALYSIS: STRUCTURE OF A CATALYTIC JRNL TITL 2 ANTIBODY AND COMPARISON WITH ITS NATURAL JRNL TITL 3 COUNTERPART. JRNL REF SCIENCE V. 263 646 1994 JRNL REFN ISSN 0036-8075 JRNL PMID 8303271 REMARK 1 REMARK 2 REMARK 2 RESOLUTION. 3.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 12.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : 19033 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.220 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3267 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 16 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.017 REMARK 3 BOND ANGLES (DEGREES) : 4.06 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 27.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.00 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FIG COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.25 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 18.55000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 89.25000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 89.25000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 18.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3500 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 20460 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -25.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 34 NE2 HIS L 34 CD2 -0.069 REMARK 500 HIS L 189 NE2 HIS L 189 CD2 -0.070 REMARK 500 HIS L 198 NE2 HIS L 198 CD2 -0.076 REMARK 500 HIS H 32 NE2 HIS H 32 CD2 -0.084 REMARK 500 HIS H 81 NE2 HIS H 81 CD2 -0.067 REMARK 500 HIS H 172 NE2 HIS H 172 CD2 -0.076 REMARK 500 HIS H 212 NE2 HIS H 212 CD2 -0.084 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 TRP L 35 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP L 35 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 LEU L 54 CA - CB - CG ANGL. DEV. = 15.0 DEGREES REMARK 500 PHE L 62 N - CA - C ANGL. DEV. = 17.4 DEGREES REMARK 500 LEU L 73 N - CA - C ANGL. DEV. = -16.8 DEGREES REMARK 500 GLU L 81 CA - C - N ANGL. DEV. = -15.3 DEGREES REMARK 500 TYR L 87 CA - CB - CG ANGL. DEV. = 12.3 DEGREES REMARK 500 TYR L 91 CB - CG - CD2 ANGL. DEV. = -3.7 DEGREES REMARK 500 LEU L 96 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 ARG L 108 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG L 108 NE - CZ - NH2 ANGL. DEV. = -3.1 DEGREES REMARK 500 VAL L 146 CG1 - CB - CG2 ANGL. DEV. = -10.6 DEGREES REMARK 500 TRP L 148 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 LYS L 149 CA - CB - CG ANGL. DEV. = 15.3 DEGREES REMARK 500 TRP L 163 CD1 - CG - CD2 ANGL. DEV. = 6.6 DEGREES REMARK 500 TRP L 163 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 MET L 175 CA - CB - CG ANGL. DEV. = 11.6 DEGREES REMARK 500 THR L 180 CA - CB - CG2 ANGL. DEV. = 9.0 DEGREES REMARK 500 CYS L 194 CA - CB - SG ANGL. DEV. = 10.2 DEGREES REMARK 500 HIS L 198 CA - CB - CG ANGL. DEV. = 11.7 DEGREES REMARK 500 ARG L 211 NE - CZ - NH2 ANGL. DEV. = -3.3 DEGREES REMARK 500 ARG L 211 N - CA - C ANGL. DEV. = 17.1 DEGREES REMARK 500 TRP H 36 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP H 36 CE2 - CD2 - CG ANGL. DEV. = -5.0 DEGREES REMARK 500 TRP H 47 CD1 - CG - CD2 ANGL. DEV. = 5.6 DEGREES REMARK 500 TRP H 47 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 SER H 76 N - CA - CB ANGL. DEV. = -12.4 DEGREES REMARK 500 SER H 76 N - CA - C ANGL. DEV. = 18.0 DEGREES REMARK 500 TYR H 79 CB - CG - CD2 ANGL. DEV. = -6.6 DEGREES REMARK 500 TYR H 79 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 GLN H 83 CA - CB - CG ANGL. DEV. = 13.3 DEGREES REMARK 500 CYS H 92 CA - CB - SG ANGL. DEV. = 9.6 DEGREES REMARK 500 ARG H 94 N - CA - C ANGL. DEV. = 16.4 DEGREES REMARK 500 ARG H 96 NE - CZ - NH1 ANGL. DEV. = 3.0 DEGREES REMARK 500 GLY H 100A N - CA - C ANGL. DEV. = -16.2 DEGREES REMARK 500 TRP H 103 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP H 103 CE2 - CD2 - CG ANGL. DEV. = -5.3 DEGREES REMARK 500 GLN H 105 N - CA - CB ANGL. DEV. = -12.8 DEGREES REMARK 500 GLN H 105 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 LEU H 124 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 ALA H 129 N - CA - C ANGL. DEV. = 17.7 DEGREES REMARK 500 CYS H 142 CA - CB - SG ANGL. DEV. = 8.4 DEGREES REMARK 500 PRO H 151 CA - C - N ANGL. DEV. = -14.4 DEGREES REMARK 500 TRP H 157 CD1 - CG - CD2 ANGL. DEV. = 5.3 DEGREES REMARK 500 TRP H 157 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 SER H 167 N - CA - C ANGL. DEV. = -19.2 DEGREES REMARK 500 ASP H 183 N - CA - C ANGL. DEV. = -18.3 DEGREES REMARK 500 THR H 192 N - CA - C ANGL. DEV. = -18.2 DEGREES REMARK 500 TRP H 199 CD1 - CG - CD2 ANGL. DEV. = 6.4 DEGREES REMARK 500 TRP H 199 CE2 - CD2 - CG ANGL. DEV. = -6.1 DEGREES REMARK 500 REMARK 500 THIS ENTRY HAS 55 ANGLE DEVIATIONS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 13 -178.03 -174.37 REMARK 500 PRO L 15 105.54 -53.58 REMARK 500 CYS L 23 81.88 -69.81 REMARK 500 SER L 27 -94.57 47.19 REMARK 500 SER L 29 -2.79 -22.13 REMARK 500 SER L 30 -17.83 -167.84 REMARK 500 THR L 31 97.17 80.60 REMARK 500 LEU L 47 -70.01 -113.09 REMARK 500 TYR L 49 -58.43 -142.86 REMARK 500 THR L 51 -47.99 53.42 REMARK 500 SER L 65 174.31 162.99 REMARK 500 GLU L 81 71.83 -107.36 REMARK 500 ASP L 82 10.79 -141.00 REMARK 500 ALA L 84 -149.35 -176.25 REMARK 500 GLN L 90 -130.71 -147.01 REMARK 500 TYR L 91 -70.86 -111.63 REMARK 500 SER L 92 -16.39 66.96 REMARK 500 TYR L 94 124.80 60.05 REMARK 500 PHE L 98 -164.60 -125.61 REMARK 500 SER L 121 136.07 63.20 REMARK 500 ASP L 143 137.93 -177.54 REMARK 500 SER L 153 37.75 -176.19 REMARK 500 ASP L 184 39.89 -83.93 REMARK 500 GLU L 185 -51.60 -168.09 REMARK 500 GLU L 187 46.91 -80.10 REMARK 500 ARG L 188 -19.50 -150.17 REMARK 500 ASN L 190 -59.85 73.38 REMARK 500 LYS L 199 5.16 -63.64 REMARK 500 ARG L 211 38.74 -12.81 REMARK 500 GLU L 213 142.84 87.60 REMARK 500 GLN H 3 155.05 175.32 REMARK 500 PHE H 27 -168.11 -107.90 REMARK 500 PRO H 30 72.78 -48.03 REMARK 500 HIS H 32 142.31 171.30 REMARK 500 LYS H 43 -119.19 -131.81 REMARK 500 ILE H 48 -65.26 -92.60 REMARK 500 PRO H 52A 46.91 -58.70 REMARK 500 TYR H 53 -67.20 -173.78 REMARK 500 PRO H 61 57.04 -62.42 REMARK 500 LYS H 62 -51.96 -171.24 REMARK 500 ALA H 67 100.95 -162.43 REMARK 500 LYS H 73 -88.99 -68.09 REMARK 500 SER H 74 -85.11 4.36 REMARK 500 SER H 76 3.95 36.00 REMARK 500 SER H 84 -15.61 -26.70 REMARK 500 SER H 87 77.94 -64.59 REMARK 500 ASP H 97 -154.20 -117.05 REMARK 500 TYR H 100 44.09 8.50 REMARK 500 GLN H 105 -163.42 -73.81 REMARK 500 SER H 128 67.06 -63.81 REMARK 500 ALA H 129 -160.51 -122.92 REMARK 500 THR H 134 -71.14 37.88 REMARK 500 SER H 136 21.09 -55.08 REMARK 500 ASN H 162 12.73 53.10 REMARK 500 SER H 163 -16.87 39.60 REMARK 500 SER H 165 -40.81 -5.83 REMARK 500 SER H 168 -147.39 -86.69 REMARK 500 PRO H 175 -179.55 -37.39 REMARK 500 SER H 180 -54.65 -174.00 REMARK 500 ASP H 183 -127.30 -147.34 REMARK 500 LEU H 184 123.06 7.61 REMARK 500 THR H 192 104.83 -165.58 REMARK 500 SER H 195 13.57 -44.18 REMARK 500 PRO H 213 -71.67 -31.91 REMARK 500 ALA H 214 26.03 -66.07 REMARK 500 SER H 215 19.46 -151.13 REMARK 500 SER H 216 10.40 53.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 VAL L 58 PRO L 59 149.81 REMARK 500 PRO L 119 PRO L 120 -143.08 REMARK 500 SER H 75 SER H 76 145.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR L 186 0.07 SIDE_CHAIN REMARK 500 TYR H 147 0.08 SIDE_CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CHIRAL CENTERS REMARK 500 REMARK 500 UNEXPECTED CONFIGURATION OF THE FOLLOWING CHIRAL REMARK 500 CENTER(S) USING IMPROPER CA--C--CB--N CHIRALITY REMARK 500 M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (11X,I3,1X,A3,1X,A1,I4,A1,6X,F5.1,6X,A1,10X,A1,3X,A16) REMARK 500 REMARK 500 M RES CSSEQI IMPROPER EXPECTED FOUND DETAILS REMARK 500 SER L 29 24.7 L L OUTSIDE RANGE REMARK 500 PHE L 62 24.8 L L OUTSIDE RANGE REMARK 500 ASN L 190 24.5 L L OUTSIDE RANGE REMARK 500 ARG L 211 24.4 L L OUTSIDE RANGE REMARK 500 ARG H 94 24.6 L L OUTSIDE RANGE REMARK 500 ALA H 129 24.9 L L OUTSIDE RANGE REMARK 500 SER H 167 45.2 L L OUTSIDE RANGE REMARK 500 ASP H 183 48.2 L L OUTSIDE RANGE REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 TSA IS THE TRANSITION STATE ANALOG HAPTEN USED TO ELICIT 1F7. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE TSA H 224 DBREF 1FIG L 1 214 GB 196805 AAA51141 23 237 DBREF 1FIG H 1 223 GB 194362 AAA51043 20 235 SEQRES 1 L 215 GLU ASN VAL LEU THR GLN SER PRO ALA ILE MET SER ALA SEQRES 2 L 215 SER PRO GLY GLU LYS VAL THR MET ALA CYS ARG ALA SER SEQRES 3 L 215 SER SER VAL SER SER THR TYR LEU HIS TRP TYR GLN GLN SEQRES 4 L 215 LYS SER GLY ALA SER PRO LYS LEU LEU ILE TYR SER THR SEQRES 5 L 215 SER ASN LEU ALA SER GLY VAL PRO ALA ARG PHE SER GLY SEQRES 6 L 215 SER GLY SER GLY THR SER TYR SER LEU THR ILE SER SER SEQRES 7 L 215 VAL GLU ALA GLU ASP ALA ALA THR TYR TYR CYS GLN GLN SEQRES 8 L 215 TYR SER GLY TYR PRO LEU THR PHE GLY ALA GLY THR LYS SEQRES 9 L 215 LEU GLU LEU LYS ARG ALA ASP ALA ALA PRO THR VAL SER SEQRES 10 L 215 ILE PHE PRO PRO SER SER GLU GLN LEU THR SER GLY GLY SEQRES 11 L 215 ALA SER VAL VAL CYS PHE LEU ASN ASN PHE TYR PRO LYS SEQRES 12 L 215 ASP ILE ASN VAL LYS TRP LYS ILE ASP GLY SER GLU ARG SEQRES 13 L 215 GLN ASN GLY VAL LEU ASN SER TRP THR ASP GLN ASP SER SEQRES 14 L 215 LYS ASP SER THR TYR SER MET SER SER THR LEU THR LEU SEQRES 15 L 215 THR LYS ASP GLU TYR GLU ARG HIS ASN SER TYR THR CYS SEQRES 16 L 215 GLU ALA THR HIS LYS THR SER THR SER PRO ILE VAL LYS SEQRES 17 L 215 SER PHE ASN ARG ASN GLU CYS SEQRES 1 H 216 ASP VAL GLN LEU GLN GLN SER GLY PRO GLU LEU GLU LYS SEQRES 2 H 216 PRO GLY ALA SER VAL LYS ILE SER CYS LYS ALA SER GLY SEQRES 3 H 216 PHE SER LEU PRO GLY HIS ASN ILE ASN TRP ILE VAL GLN SEQRES 4 H 216 ARG ASN GLY LYS SER LEU GLU TRP ILE GLY ASN ILE ASP SEQRES 5 H 216 PRO TYR TYR GLY GLY THR ASN PHE ASN PRO LYS PHE LYS SEQRES 6 H 216 GLY LYS ALA THR LEU THR VAL ASP LYS SER SER SER THR SEQRES 7 H 216 LEU TYR MET HIS LEU THR SER LEU GLN SER GLU ASP SER SEQRES 8 H 216 ALA VAL TYR TYR CYS ALA ARG ARG ARG ASP GLY ASN TYR SEQRES 9 H 216 GLY PHE THR TYR TRP GLY GLN GLY THR LEU VAL THR VAL SEQRES 10 H 216 SER ALA ALA LYS THR THR PRO PRO SER VAL TYR PRO LEU SEQRES 11 H 216 ALA PRO GLY SER ALA ALA GLN THR ASN SER MET VAL THR SEQRES 12 H 216 LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO VAL SEQRES 13 H 216 THR VAL THR TRP ASN SER GLY SER LEU SER SER GLY VAL SEQRES 14 H 216 HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR THR SEQRES 15 H 216 LEU SER SER SER VAL THR VAL PRO SER SER THR TRP PRO SEQRES 16 H 216 SER GLU THR VAL THR CYS ASN VAL ALA HIS PRO ALA SER SEQRES 17 H 216 SER THR LYS VAL ASP LYS LYS ILE HET TSA H 224 16 HETNAM TSA 8-HYDROXY-2-OXA-BICYCLO[3.3.1]NON-6-ENE-3,5- HETNAM 2 TSA DICARBOXYLIC ACID FORMUL 3 TSA C10 H12 O6 FORMUL 4 HOH *(H2 O) HELIX 1 1 SER L 121 SER L 127 1 7 HELIX 2 2 LYS L 183 GLU L 187 1 5 HELIX 3 3 PRO H 213 SER H 216 5 4 SHEET 1 A 2 LEU L 4 THR L 5 0 SHEET 2 A 2 GLY L 99 ALA L 100 1 N ALA L 100 O LEU L 4 SHEET 1 B 5 ILE L 10 ALA L 13 0 SHEET 2 B 5 THR L 102 LEU L 106 1 O LYS L 103 N MET L 11 SHEET 3 B 5 ALA L 84 GLN L 89 -1 O ALA L 84 N LEU L 104 SHEET 4 B 5 HIS L 34 GLN L 38 -1 N HIS L 34 O GLN L 89 SHEET 5 B 5 PRO L 44 ILE L 48 -1 O LYS L 45 N GLN L 37 SHEET 1 C 3 VAL L 19 THR L 20 0 SHEET 2 C 3 SER L 70 ILE L 75 -1 O ILE L 75 N VAL L 19 SHEET 3 C 3 PHE L 62 SER L 67 -1 O SER L 63 N THR L 74 SHEET 1 D 4 THR L 114 PHE L 118 0 SHEET 2 D 4 GLY L 129 PHE L 139 -1 O VAL L 133 N PHE L 118 SHEET 3 D 4 TYR L 173 THR L 182 -1 O TYR L 173 N PHE L 139 SHEET 4 D 4 VAL L 159 TRP L 163 -1 N LEU L 160 O THR L 178 SHEET 1 E 3 ASN L 145 LYS L 149 0 SHEET 2 E 3 THR L 193 THR L 197 -1 N THR L 193 O LYS L 149 SHEET 3 E 3 ILE L 205 LYS L 207 -1 N ILE L 205 O ALA L 196 SHEET 1 F 4 GLN H 3 GLN H 6 0 SHEET 2 F 4 VAL H 18 SER H 25 -1 O LYS H 23 N GLN H 5 SHEET 3 F 4 THR H 77 LEU H 82 -1 N LEU H 78 O CYS H 22 SHEET 4 F 4 LEU H 69 VAL H 71 -1 O THR H 70 N TYR H 79 SHEET 1 G 6 GLU H 10 GLU H 12 0 SHEET 2 G 6 THR H 107 VAL H 111 1 O LEU H 108 N GLU H 10 SHEET 3 G 6 VAL H 89 TYR H 90 -1 N TYR H 90 O THR H 107 SHEET 4 G 6 ILE H 34 GLN H 39 -1 N GLN H 39 O VAL H 89 SHEET 5 G 6 LEU H 45 ILE H 51 -1 O GLU H 46 N VAL H 38 SHEET 6 G 6 THR H 57 PHE H 59 -1 O ASN H 58 N ASN H 50 SHEET 1 H 2 ALA H 93 ARG H 94 0 SHEET 2 H 2 TYR H 102 TRP H 103 -1 N TYR H 102 O ARG H 94 SHEET 1 I 4 SER H 120 LEU H 124 0 SHEET 2 I 4 GLY H 141 TYR H 147 -1 O GLY H 141 N LEU H 124 SHEET 3 I 4 TYR H 185 SER H 190 -1 O TYR H 185 N TYR H 147 SHEET 4 I 4 HIS H 172 PHE H 174 -1 O HIS H 172 N SER H 190 SHEET 1 J 3 THR H 153 TRP H 157 0 SHEET 2 J 3 VAL H 205 HIS H 212 -1 N ASN H 209 O THR H 156 SHEET 3 J 3 THR H 217 ILE H 223 -1 O THR H 217 N HIS H 212 SSBOND 1 CYS L 23 CYS L 88 1555 1555 2.04 SSBOND 2 CYS L 134 CYS L 194 1555 1555 2.01 SSBOND 3 CYS H 22 CYS H 92 1555 1555 2.00 SSBOND 4 CYS H 142 CYS H 208 1555 1555 2.03 CISPEP 1 SER L 7 PRO L 8 0 -0.19 CISPEP 2 TYR L 94 PRO L 95 0 1.92 CISPEP 3 TYR L 140 PRO L 141 0 -0.77 CISPEP 4 GLY H 8 PRO H 9 0 -1.88 CISPEP 5 PHE H 148 PRO H 149 0 -1.96 CISPEP 6 GLU H 150 PRO H 151 0 2.15 CISPEP 7 TRP H 199 PRO H 200 0 -0.48 SITE 1 AC1 10 ASN H 33 ASN H 35 ASN H 50 ARG H 94 SITE 2 AC1 10 ARG H 95 ASP H 97 TYR H 100 PHE H 100B SITE 3 AC1 10 HOH H 225 TYR L 94 CRYST1 37.100 63.300 178.500 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.026954 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015798 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005602 0.00000