HEADER SUGAR BINDING PROTEIN 03-AUG-00 1FIH TITLE N-ACETYLGALACTOSAMINE BINDING MUTANT OF MANNOSE-BINDING PROTEIN A TITLE 2 (QPDWG-HDRPY), COMPLEX WITH N-ACETYLGALACTOSAMINE COMPND MOL_ID: 1; COMPND 2 MOLECULE: MANNOSE-BINDING PROTEIN A; COMPND 3 CHAIN: A, B, C; COMPND 4 FRAGMENT: RESIDUES 73-226; COMPND 5 SYNONYM: MBP-A, MANNAN-BINDING PROTEIN; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: NORWAY RAT; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 ORGAN: LIVER; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PINIIIOMPA2 KEYWDS LECTIN, C-TYPE LECTIN, CALCIUM-BINDING PROTEIN, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,D.TORGERSON,K.DRICKAMER,W.I.WEIS REVDAT 8 30-OCT-24 1FIH 1 REMARK REVDAT 7 03-NOV-21 1FIH 1 SEQADV HETSYN REVDAT 6 29-JUL-20 1FIH 1 COMPND REMARK SEQADV HETNAM REVDAT 6 2 1 LINK SITE REVDAT 5 14-MAR-18 1FIH 1 SEQADV REVDAT 4 24-FEB-09 1FIH 1 VERSN REVDAT 3 01-APR-03 1FIH 1 JRNL REVDAT 2 10-JAN-01 1FIH 1 JRNL REVDAT 1 23-AUG-00 1FIH 0 JRNL AUTH H.FEINBERG,D.TORGERSEN,K.DRICKAMER,W.I.WEIS JRNL TITL MECHANISM OF PH-DEPENDENT N-ACETYLGALACTOSAMINE BINDING BY A JRNL TITL 2 FUNCTIONAL MIMIC OF THE HEPATOCYTE ASIALOGLYCOPROTEIN JRNL TITL 3 RECEPTOR. JRNL REF J.BIOL.CHEM. V. 275 35176 2000 JRNL REFN ISSN 0021-9258 JRNL PMID 10931846 JRNL DOI 10.1074/JBC.M005557200 REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.66 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 1726845.310 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 89.9 REMARK 3 NUMBER OF REFLECTIONS : 42294 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.237 REMARK 3 FREE R VALUE : 0.269 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 8.300 REMARK 3 FREE R VALUE TEST SET COUNT : 3530 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.005 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.07 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 87.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6196 REMARK 3 BIN R VALUE (WORKING SET) : 0.2830 REMARK 3 BIN FREE R VALUE : 0.3310 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 8.50 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 572 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.014 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3615 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 72 REMARK 3 SOLVENT ATOMS : 171 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : -7.15000 REMARK 3 B33 (A**2) : 6.36000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 5.17000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.18 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.26 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.790 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.510 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 2.370 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 3.500 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 44.43 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : ION.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : CARBOHYDRATE.PARAM-HF REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : CARBOHYDRATE.TOP-HF REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FIH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 14-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011617. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-NOV-99 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.98 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 43653 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 92.7 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : 0.05700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.02 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.7 REMARK 200 DATA REDUNDANCY IN SHELL : 3.90 REMARK 200 R MERGE FOR SHELL (I) : 0.32800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.23 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.17 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13.5% POLYETHYLENE GLYCOL 8000 100 MM REMARK 280 TRIS-HCL 10 MM NACL 20 MM CACL2, PH 8.0, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 40.74500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.27600 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 40.74500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 42.27600 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLIGICAL ASSEMBLY IS A TRIMER. THE TRIMER IS REMARK 300 CONTAINED IN THE ASYMMETRIC UNIT REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8770 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22180 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -162.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 132 32.61 72.19 REMARK 500 LYS A 152 -6.10 69.11 REMARK 500 THR A 177 -88.08 -114.83 REMARK 500 ASN A 180 53.31 -143.11 REMARK 500 ASP A 188 54.43 39.57 REMARK 500 ASN B 140 -165.99 -169.62 REMARK 500 LYS B 152 -15.34 67.02 REMARK 500 GLU B 165 125.85 -39.79 REMARK 500 TYR B 178 141.65 -176.52 REMARK 500 ASN B 180 56.73 -156.88 REMARK 500 TRP B 181 -179.55 -66.39 REMARK 500 LEU B 194 1.03 -60.97 REMARK 500 VAL B 204 -148.83 -103.32 REMARK 500 LYS C 152 -25.93 71.61 REMARK 500 ASN C 180 46.55 -146.93 REMARK 500 ASP C 188 55.68 38.22 REMARK 500 VAL C 204 -146.08 -104.80 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 161 OD1 REMARK 620 2 ASP A 161 OD2 49.1 REMARK 620 3 GLU A 165 OE1 107.4 80.9 REMARK 620 4 GLU A 165 OE2 122.8 74.0 50.0 REMARK 620 5 ASP A 188 OD1 159.0 150.4 78.0 76.5 REMARK 620 6 GLU A 198 O 87.9 131.2 142.0 145.1 76.8 REMARK 620 7 ASP A 199 OD1 71.1 101.0 72.4 122.3 92.1 80.7 REMARK 620 8 HOH A 484 O 94.0 83.0 133.2 83.4 96.6 77.8 154.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN A 185 OE1 REMARK 620 2 ASP A 187 OD1 74.3 REMARK 620 3 GLU A 198 OE1 148.9 75.3 REMARK 620 4 ASN A 210 OD1 63.8 137.9 146.8 REMARK 620 5 ASP A 211 O 127.3 137.7 74.0 76.3 REMARK 620 6 ASP A 211 OD1 75.7 82.3 93.9 90.5 71.6 REMARK 620 7 NGA A 227 O3 125.6 122.5 77.4 82.1 77.5 149.1 REMARK 620 8 NGA A 227 O4 78.9 72.0 97.8 95.8 140.5 147.8 63.1 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 84 OE2 REMARK 620 2 GLU A 165 OE1 87.0 REMARK 620 3 ASP A 199 OD1 154.4 68.6 REMARK 620 4 ASP A 199 OD2 155.5 116.3 50.1 REMARK 620 5 HOH A 485 O 99.2 83.1 71.2 91.4 REMARK 620 6 HOH A 488 O 88.4 91.4 99.4 83.9 170.3 REMARK 620 7 HOH A 489 O 81.2 168.1 122.8 75.6 96.8 90.2 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HOH A 487 O REMARK 620 2 GLU C 84 OE2 92.2 REMARK 620 3 GLU C 165 OE1 90.0 91.1 REMARK 620 4 ASP C 199 OD1 74.7 158.2 71.9 REMARK 620 5 ASP C 199 OD2 96.2 149.5 118.0 51.3 REMARK 620 6 HOH C 471 O 178.8 86.6 90.2 106.5 84.7 REMARK 620 7 HOH C 473 O 93.8 72.7 163.4 124.7 77.6 85.6 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 161 OD1 REMARK 620 2 ASP B 161 OD2 49.8 REMARK 620 3 GLU B 165 OE1 113.4 84.7 REMARK 620 4 GLU B 165 OE2 122.4 72.6 53.2 REMARK 620 5 ASP B 188 OD1 151.6 158.3 80.4 85.9 REMARK 620 6 GLU B 198 O 84.9 128.4 143.0 143.0 71.1 REMARK 620 7 ASP B 199 OD1 73.3 99.0 69.2 122.1 90.3 87.5 REMARK 620 8 HOH B 425 O 92.5 89.1 138.7 85.9 91.8 66.9 152.0 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN B 185 OE1 REMARK 620 2 ASP B 187 OD1 65.6 REMARK 620 3 GLU B 198 OE1 150.8 86.6 REMARK 620 4 ASN B 210 OD1 64.4 127.6 144.7 REMARK 620 5 ASP B 211 O 128.4 137.9 67.0 87.3 REMARK 620 6 ASP B 211 OD1 75.1 79.4 91.7 101.9 69.7 REMARK 620 7 NGA B 227 O3 130.8 126.0 72.5 79.1 78.1 147.6 REMARK 620 8 NGA B 227 O4 84.3 67.0 93.3 93.3 142.6 145.5 65.4 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 3 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 165 OE1 REMARK 620 2 ASP B 199 OD1 69.9 REMARK 620 3 ASP B 199 OD2 123.0 53.3 REMARK 620 4 HOH B 417 O 77.7 77.8 93.0 REMARK 620 5 HOH B 455 O 104.3 99.9 83.3 176.3 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 1 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 161 OD1 REMARK 620 2 ASP C 161 OD2 49.2 REMARK 620 3 GLU C 165 OE1 100.7 77.6 REMARK 620 4 GLU C 165 OE2 121.8 73.8 49.7 REMARK 620 5 ASP C 188 OD1 153.3 156.4 87.0 82.6 REMARK 620 6 GLU C 198 O 87.2 125.7 151.6 144.6 75.0 REMARK 620 7 ASP C 199 OD1 68.7 103.4 74.5 123.9 89.2 83.3 REMARK 620 8 HOH C 470 O 93.6 74.8 127.7 80.0 101.8 78.3 155.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 2 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLN C 185 OE1 REMARK 620 2 ASP C 187 OD1 78.6 REMARK 620 3 GLU C 198 OE1 147.0 69.3 REMARK 620 4 ASN C 210 OD1 65.3 142.8 147.5 REMARK 620 5 ASP C 211 O 129.3 132.2 72.3 80.8 REMARK 620 6 ASP C 211 OD1 75.0 84.0 93.8 94.5 71.2 REMARK 620 7 NGA C 227 O3 127.1 117.2 76.6 80.8 79.2 150.4 REMARK 620 8 NGA C 227 O4 80.6 71.2 95.6 93.6 140.6 148.1 61.5 REMARK 620 N 1 2 3 4 5 6 7 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FIF RELATED DB: PDB REMARK 900 1FIF IS N-ACETYLGALACTOSAMINE BINDING MUTANT OF MANNOSE-BINDING REMARK 900 PROTEIN A, NATIVE. DBREF 1FIH A 73 226 UNP P19999 MBL1_RAT 90 238 DBREF 1FIH B 73 226 UNP P19999 MBL1_RAT 90 238 DBREF 1FIH C 73 226 UNP P19999 MBL1_RAT 90 238 SEQADV 1FIH GLN A 185 UNP P19999 GLU 202 ENGINEERED MUTATION SEQADV 1FIH ASP A 187 UNP P19999 ASN 204 ENGINEERED MUTATION SEQADV 1FIH TRP A 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1FIH TRP A 181 UNP P19999 INSERTION SEQADV 1FIH GLY A 191 UNP P19999 INSERTION SEQADV 1FIH HIS A 192 UNP P19999 INSERTION SEQADV 1FIH GLY A 193 UNP P19999 INSERTION SEQADV 1FIH LEU A 194 UNP P19999 INSERTION SEQADV 1FIH GLY A 196 UNP P19999 SER 208 ENGINEERED MUTATION SEQADV 1FIH HIS A 202 UNP P19999 THR 214 ENGINEERED MUTATION SEQADV 1FIH ASP A 212 UNP P19999 ILE 224 ENGINEERED MUTATION SEQADV 1FIH ARG A 216 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 1FIH PRO A 217 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 1FIH TYR A 218 UNP P19999 HIS 230 ENGINEERED MUTATION SEQADV 1FIH GLN B 185 UNP P19999 GLU 202 ENGINEERED MUTATION SEQADV 1FIH ASP B 187 UNP P19999 ASN 204 ENGINEERED MUTATION SEQADV 1FIH TRP B 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1FIH TRP B 181 UNP P19999 INSERTION SEQADV 1FIH GLY B 191 UNP P19999 INSERTION SEQADV 1FIH HIS B 192 UNP P19999 INSERTION SEQADV 1FIH GLY B 193 UNP P19999 INSERTION SEQADV 1FIH LEU B 194 UNP P19999 INSERTION SEQADV 1FIH GLY B 196 UNP P19999 SER 208 ENGINEERED MUTATION SEQADV 1FIH HIS B 202 UNP P19999 THR 214 ENGINEERED MUTATION SEQADV 1FIH ASP B 212 UNP P19999 ILE 224 ENGINEERED MUTATION SEQADV 1FIH ARG B 216 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 1FIH PRO B 217 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 1FIH TYR B 218 UNP P19999 HIS 230 ENGINEERED MUTATION SEQADV 1FIH GLN C 185 UNP P19999 GLU 202 ENGINEERED MUTATION SEQADV 1FIH ASP C 187 UNP P19999 ASN 204 ENGINEERED MUTATION SEQADV 1FIH TRP C 189 UNP P19999 HIS 206 ENGINEERED MUTATION SEQADV 1FIH TRP C 181 UNP P19999 INSERTION SEQADV 1FIH GLY C 191 UNP P19999 INSERTION SEQADV 1FIH HIS C 192 UNP P19999 INSERTION SEQADV 1FIH GLY C 193 UNP P19999 INSERTION SEQADV 1FIH LEU C 194 UNP P19999 INSERTION SEQADV 1FIH GLY C 196 UNP P19999 SER 208 ENGINEERED MUTATION SEQADV 1FIH HIS C 202 UNP P19999 THR 214 ENGINEERED MUTATION SEQADV 1FIH ASP C 212 UNP P19999 ILE 224 ENGINEERED MUTATION SEQADV 1FIH ARG C 216 UNP P19999 ALA 228 ENGINEERED MUTATION SEQADV 1FIH PRO C 217 UNP P19999 SER 229 ENGINEERED MUTATION SEQADV 1FIH TYR C 218 UNP P19999 HIS 230 ENGINEERED MUTATION SEQRES 1 A 154 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 A 154 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 A 154 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 A 154 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 A 154 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 A 154 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 A 154 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 A 154 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 A 154 THR TYR SER ASN TRP LYS LYS ASP GLN PRO ASP ASP TRP SEQRES 10 A 154 TYR GLY HIS GLY LEU GLY GLY GLY GLU ASP CYS VAL HIS SEQRES 11 A 154 ILE VAL ASP ASN GLY LEU TRP ASN ASP ASP SER CYS GLN SEQRES 12 A 154 ARG PRO TYR THR ALA VAL CYS GLU PHE PRO ALA SEQRES 1 B 154 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 B 154 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 B 154 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 B 154 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 B 154 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 B 154 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 B 154 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 B 154 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 B 154 THR TYR SER ASN TRP LYS LYS ASP GLN PRO ASP ASP TRP SEQRES 10 B 154 TYR GLY HIS GLY LEU GLY GLY GLY GLU ASP CYS VAL HIS SEQRES 11 B 154 ILE VAL ASP ASN GLY LEU TRP ASN ASP ASP SER CYS GLN SEQRES 12 B 154 ARG PRO TYR THR ALA VAL CYS GLU PHE PRO ALA SEQRES 1 C 154 ALA ILE GLU VAL LYS LEU ALA ASN MET GLU ALA GLU ILE SEQRES 2 C 154 ASN THR LEU LYS SER LYS LEU GLU LEU THR ASN LYS LEU SEQRES 3 C 154 HIS ALA PHE SER MET GLY LYS LYS SER GLY LYS LYS PHE SEQRES 4 C 154 PHE VAL THR ASN HIS GLU ARG MET PRO PHE SER LYS VAL SEQRES 5 C 154 LYS ALA LEU CYS SER GLU LEU ARG GLY THR VAL ALA ILE SEQRES 6 C 154 PRO ARG ASN ALA GLU GLU ASN LYS ALA ILE GLN GLU VAL SEQRES 7 C 154 ALA LYS THR SER ALA PHE LEU GLY ILE THR ASP GLU VAL SEQRES 8 C 154 THR GLU GLY GLN PHE MET TYR VAL THR GLY GLY ARG LEU SEQRES 9 C 154 THR TYR SER ASN TRP LYS LYS ASP GLN PRO ASP ASP TRP SEQRES 10 C 154 TYR GLY HIS GLY LEU GLY GLY GLY GLU ASP CYS VAL HIS SEQRES 11 C 154 ILE VAL ASP ASN GLY LEU TRP ASN ASP ASP SER CYS GLN SEQRES 12 C 154 ARG PRO TYR THR ALA VAL CYS GLU PHE PRO ALA HET NGA A 227 15 HET CA A 1 1 HET CA A 2 1 HET CA A 3 1 HET CL A 415 1 HET NGA B 227 15 HET CA B 1 1 HET CA B 2 1 HET CA B 3 1 HET CL B 416 1 HET NGA C 227 15 HET NGA C 228 15 HET CA C 1 1 HET CA C 2 1 HET CA C 3 1 HET CL C 417 1 HETNAM NGA 2-ACETAMIDO-2-DEOXY-BETA-D-GALACTOPYRANOSE HETNAM CA CALCIUM ION HETNAM CL CHLORIDE ION HETSYN NGA N-ACETYL-BETA-D-GALACTOSAMINE; 2-ACETAMIDO-2-DEOXY- HETSYN 2 NGA BETA-D-GALACTOSE; 2-ACETAMIDO-2-DEOXY-D-GALACTOSE; 2- HETSYN 3 NGA ACETAMIDO-2-DEOXY-GALACTOSE; N-ACETYL-D-GALACTOSAMINE FORMUL 4 NGA 4(C8 H15 N O6) FORMUL 5 CA 9(CA 2+) FORMUL 8 CL 3(CL 1-) FORMUL 20 HOH *171(H2 O) HELIX 1 1 ALA A 73 MET A 103 1 31 HELIX 2 2 PRO A 120 LEU A 131 1 12 HELIX 3 3 ASN A 140 LYS A 152 1 13 HELIX 4 4 ALA B 73 MET B 103 1 31 HELIX 5 5 PHE B 121 LEU B 131 1 11 HELIX 6 6 ASN B 140 LYS B 152 1 13 HELIX 7 7 ALA C 73 MET C 103 1 31 HELIX 8 8 PRO C 120 LEU C 131 1 12 HELIX 9 9 ASN C 140 LYS C 152 1 13 HELIX 10 10 ASP C 205 GLY C 207 5 3 SHEET 1 A 3 PHE A 111 MET A 119 0 SHEET 2 A 3 TYR A 218 PHE A 224 -1 O TYR A 218 N MET A 119 SHEET 3 A 3 THR A 134 VAL A 135 -1 O THR A 134 N GLU A 223 SHEET 1 B 4 MET A 169 TYR A 170 0 SHEET 2 B 4 ALA A 155 THR A 160 -1 O THR A 160 N MET A 169 SHEET 3 B 4 CYS A 200 ILE A 203 -1 O VAL A 201 N LEU A 157 SHEET 4 B 4 TRP A 209 ASP A 212 -1 O ASN A 210 N HIS A 202 SHEET 1 C 3 PHE B 111 VAL B 113 0 SHEET 2 C 3 CYS B 222 PHE B 224 -1 N CYS B 222 O VAL B 113 SHEET 3 C 3 THR B 134 VAL B 135 -1 O THR B 134 N GLU B 223 SHEET 1 D 2 ARG B 118 PRO B 120 0 SHEET 2 D 2 PRO B 217 THR B 219 -1 N TYR B 218 O MET B 119 SHEET 1 E 4 MET B 169 TYR B 170 0 SHEET 2 E 4 PHE B 156 THR B 160 -1 O THR B 160 N MET B 169 SHEET 3 E 4 CYS B 200 ILE B 203 -1 O VAL B 201 N LEU B 157 SHEET 4 E 4 TRP B 209 ASP B 212 -1 O ASN B 210 N HIS B 202 SHEET 1 F 3 PHE C 111 MET C 119 0 SHEET 2 F 3 TYR C 218 PHE C 224 -1 O TYR C 218 N MET C 119 SHEET 3 F 3 THR C 134 VAL C 135 -1 O THR C 134 N GLU C 223 SHEET 1 G 4 MET C 169 TYR C 170 0 SHEET 2 G 4 PHE C 156 THR C 160 -1 O THR C 160 N MET C 169 SHEET 3 G 4 CYS C 200 ILE C 203 -1 O VAL C 201 N LEU C 157 SHEET 4 G 4 TRP C 209 ASP C 212 -1 O ASN C 210 N HIS C 202 SSBOND 1 CYS A 128 CYS A 222 1555 1555 2.04 SSBOND 2 CYS A 200 CYS A 214 1555 1555 2.04 SSBOND 3 CYS B 128 CYS B 222 1555 1555 2.04 SSBOND 4 CYS B 200 CYS B 214 1555 1555 2.03 SSBOND 5 CYS C 128 CYS C 222 1555 1555 2.04 SSBOND 6 CYS C 200 CYS C 214 1555 1555 2.03 LINK CA CA A 1 OD1 ASP A 161 1555 1555 2.80 LINK CA CA A 1 OD2 ASP A 161 1555 1555 2.33 LINK CA CA A 1 OE1 GLU A 165 1555 1555 2.58 LINK CA CA A 1 OE2 GLU A 165 1555 1555 2.60 LINK CA CA A 1 OD1 ASP A 188 1555 1555 2.49 LINK CA CA A 1 O GLU A 198 1555 1555 2.40 LINK CA CA A 1 OD1 ASP A 199 1555 1555 2.22 LINK CA CA A 1 O HOH A 484 1555 1555 2.31 LINK CA CA A 2 OE1 GLN A 185 1555 1555 2.46 LINK CA CA A 2 OD1 ASP A 187 1555 1555 2.50 LINK CA CA A 2 OE1 GLU A 198 1555 1555 2.32 LINK CA CA A 2 OD1 ASN A 210 1555 1555 2.48 LINK CA CA A 2 O ASP A 211 1555 1555 2.48 LINK CA CA A 2 OD1 ASP A 211 1555 1555 2.25 LINK CA CA A 2 O3 NGA A 227 1555 1555 2.55 LINK CA CA A 2 O4 NGA A 227 1555 1555 2.69 LINK CA CA A 3 OE2 GLU A 84 1555 1555 2.41 LINK CA CA A 3 OE1 GLU A 165 1555 3455 2.32 LINK CA CA A 3 OD1 ASP A 199 1555 3455 2.70 LINK CA CA A 3 OD2 ASP A 199 1555 3455 2.44 LINK CA CA A 3 O HOH A 485 1555 3455 2.25 LINK CA CA A 3 O HOH A 488 1555 1555 2.30 LINK CA CA A 3 O HOH A 489 1555 3455 2.40 LINK O HOH A 487 CA CA C 3 1555 1555 2.17 LINK CA CA B 1 OD1 ASP B 161 1555 1555 2.80 LINK CA CA B 1 OD2 ASP B 161 1555 1555 2.29 LINK CA CA B 1 OE1 GLU B 165 1555 1555 2.44 LINK CA CA B 1 OE2 GLU B 165 1555 1555 2.48 LINK CA CA B 1 OD1 ASP B 188 1555 1555 2.60 LINK CA CA B 1 O GLU B 198 1555 1555 2.56 LINK CA CA B 1 OD1 ASP B 199 1555 1555 2.24 LINK CA CA B 1 O HOH B 425 1555 1555 2.38 LINK CA CA B 2 OE1 GLN B 185 1555 1555 2.39 LINK CA CA B 2 OD1 ASP B 187 1555 1555 2.30 LINK CA CA B 2 OE1 GLU B 198 1555 1555 2.40 LINK CA CA B 2 OD1 ASN B 210 1555 1555 2.69 LINK CA CA B 2 O ASP B 211 1555 1555 2.37 LINK CA CA B 2 OD1 ASP B 211 1555 1555 2.29 LINK CA CA B 2 O3 NGA B 227 1555 1555 2.61 LINK CA CA B 2 O4 NGA B 227 1555 1555 2.51 LINK CA CA B 3 OE1 GLU B 165 1555 1555 2.26 LINK CA CA B 3 OD1 ASP B 199 1555 1555 2.38 LINK CA CA B 3 OD2 ASP B 199 1555 1555 2.52 LINK CA CA B 3 O HOH B 417 1555 1555 2.35 LINK CA CA B 3 O HOH B 455 1555 1555 2.40 LINK CA CA C 1 OD1 ASP C 161 1555 1555 2.83 LINK CA CA C 1 OD2 ASP C 161 1555 1555 2.34 LINK CA CA C 1 OE1 GLU C 165 1555 1555 2.58 LINK CA CA C 1 OE2 GLU C 165 1555 1555 2.65 LINK CA CA C 1 OD1 ASP C 188 1555 1555 2.57 LINK CA CA C 1 O GLU C 198 1555 1555 2.34 LINK CA CA C 1 OD1 ASP C 199 1555 1555 2.25 LINK CA CA C 1 O HOH C 470 1555 1555 2.39 LINK CA CA C 2 OE1 GLN C 185 1555 1555 2.44 LINK CA CA C 2 OD1 ASP C 187 1555 1555 2.49 LINK CA CA C 2 OE1 GLU C 198 1555 1555 2.36 LINK CA CA C 2 OD1 ASN C 210 1555 1555 2.65 LINK CA CA C 2 O ASP C 211 1555 1555 2.40 LINK CA CA C 2 OD1 ASP C 211 1555 1555 2.12 LINK CA CA C 2 O3 NGA C 227 1555 1555 2.70 LINK CA CA C 2 O4 NGA C 227 1555 1555 2.68 LINK CA CA C 3 OE2 GLU C 84 1555 1555 2.50 LINK CA CA C 3 OE1 GLU C 165 1555 3445 2.38 LINK CA CA C 3 OD1 ASP C 199 1555 3445 2.61 LINK CA CA C 3 OD2 ASP C 199 1555 3445 2.44 LINK CA CA C 3 O HOH C 471 1555 1555 2.29 LINK CA CA C 3 O HOH C 473 1555 1555 2.54 CISPEP 1 GLN A 185 PRO A 186 0 -0.14 CISPEP 2 GLN B 185 PRO B 186 0 0.00 CISPEP 3 GLN C 185 PRO C 186 0 0.00 CRYST1 81.490 84.552 98.542 90.00 105.43 90.00 C 1 2 1 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012271 0.000000 0.003388 0.00000 SCALE2 0.000000 0.011827 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010528 0.00000