data_1FIR # _entry.id 1FIR # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FIR pdb_00001fir 10.2210/pdb1fir/pdb NDB TR0003 ? ? RCSB RCSB011622 ? ? WWPDB D_1000011622 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FIR _pdbx_database_status.recvd_initial_deposition_date 2000-08-06 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Benas, P.' 1 'Dumas, P.' 2 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'The crystal structure of HIV reverse-transcription primer tRNA(Lys,3) shows a canonical anticodon loop.' RNA 6 1347 1355 2000 RNARFU UK 1355-8382 2122 ? 11073212 10.1017/S1355838200000911 1 'Molecular blocs in tRNAs that could prevent +1 frameshifting' 'To be Published' ? ? ? 2000 ? ? ? 0353 ? ? ? 2 'Studies on the ternary initiation complex of HIV-1 reverse transcription and crystallographic structures of two partners' Thesis ? 1 313 2000 ? ? ? ? ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Benas, P.' 1 ? primary 'Bec, G.' 2 ? primary 'Keith, G.' 3 ? primary 'Marquet, R.' 4 ? primary 'Ehresmann, C.' 5 ? primary 'Ehresmann, B.' 6 ? primary 'Dumas, P.' 7 ? 1 'Benas, P.' 8 ? 1 'Dumas, P.' 9 ? 2 'Benas, P.' 10 ? # _cell.entry_id 1FIR _cell.length_a 100.72 _cell.length_b 100.72 _cell.length_c 82.61 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 120.00 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 1FIR _symmetry.space_group_name_H-M 'P 32 1 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting trigonal _symmetry.Int_Tables_number 153 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer nat 'HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)' 24847.088 1 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn 'SODIUM ION' 22.990 1 ? ? ? ? 4 water nat water 18.015 16 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;GCCCG(2MG)AUA(2MG)CUCAG(H2U)CGG(H2U)AGAGCA(PSU)CAGACU(70U)UU(12A)A(PSU)CUGAGG (7MG)(H2U)(5MC)(5MC)AGGG(2MU)(PSU)CA(1MA)GUCCCUGUUCGGGCGCCA ; _entity_poly.pdbx_seq_one_letter_code_can GCCCGGAUAGCUCAGUCGGUAGAGCAUCAGACUUUUAAUCUGAGGGUCCAGGGUUCAAGUCCCUGUUCGGGCGCCA _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 C n 1 3 C n 1 4 C n 1 5 G n 1 6 2MG n 1 7 A n 1 8 U n 1 9 A n 1 10 2MG n 1 11 C n 1 12 U n 1 13 C n 1 14 A n 1 15 G n 1 16 H2U n 1 17 C n 1 18 G n 1 19 G n 1 20 H2U n 1 21 A n 1 22 G n 1 23 A n 1 24 G n 1 25 C n 1 26 A n 1 27 PSU n 1 28 C n 1 29 A n 1 30 G n 1 31 A n 1 32 C n 1 33 U n 1 34 70U n 1 35 U n 1 36 U n 1 37 12A n 1 38 A n 1 39 PSU n 1 40 C n 1 41 U n 1 42 G n 1 43 A n 1 44 G n 1 45 G n 1 46 7MG n 1 47 H2U n 1 48 5MC n 1 49 5MC n 1 50 A n 1 51 G n 1 52 G n 1 53 G n 1 54 2MU n 1 55 PSU n 1 56 C n 1 57 A n 1 58 1MA n 1 59 G n 1 60 U n 1 61 C n 1 62 C n 1 63 C n 1 64 U n 1 65 G n 1 66 U n 1 67 U n 1 68 C n 1 69 G n 1 70 G n 1 71 G n 1 72 C n 1 73 G n 1 74 C n 1 75 C n 1 76 A n # _entity_src_nat.entity_id 1 _entity_src_nat.pdbx_src_id 1 _entity_src_nat.pdbx_alt_source_flag sample _entity_src_nat.pdbx_beg_seq_num ? _entity_src_nat.pdbx_end_seq_num ? _entity_src_nat.common_name cattle _entity_src_nat.pdbx_organism_scientific 'Bos taurus' _entity_src_nat.pdbx_ncbi_taxonomy_id 9913 _entity_src_nat.genus Bos _entity_src_nat.species ? _entity_src_nat.strain ? _entity_src_nat.tissue ? _entity_src_nat.tissue_fraction ? _entity_src_nat.pdbx_secretion ? _entity_src_nat.pdbx_fragment ? _entity_src_nat.pdbx_variant ? _entity_src_nat.pdbx_cell_line ? _entity_src_nat.pdbx_atcc ? _entity_src_nat.pdbx_cellular_location ? _entity_src_nat.pdbx_organ ? _entity_src_nat.pdbx_organelle ? _entity_src_nat.pdbx_cell ? _entity_src_nat.pdbx_plasmid_name ? _entity_src_nat.pdbx_plasmid_details ? _entity_src_nat.details 'THIS SEQUENCE OCCURS NATURALLY IN HUMANS, BOVINES AND CHICKENS' # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1FIR _struct_ref.pdbx_db_accession 1FIR _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1FIR _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 76 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession 1FIR _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 76 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 76 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 12A 'RNA linking' n "2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE-5'-MONOPHOSPHATE" ? 'C16 H23 N6 O11 P S' 538.426 1MA 'RNA linking' n "6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O7 P' 361.248 2MG 'RNA linking' n "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H16 N5 O8 P' 377.247 2MU 'RNA linking' n "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" ? 'C11 H17 N2 O9 P' 352.234 5MC 'RNA linking' n "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" ? 'C10 H16 N3 O8 P' 337.223 70U 'RNA linking' n "5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'-MONOPHOSPHATE" ? 'C12 H17 N2 O10 P S' 412.310 7MG 'RNA linking' n "7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE" ? 'C11 H18 N5 O8 P' 379.263 A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 H2U 'RNA linking' n "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" ? 'C9 H15 N2 O9 P' 326.197 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 NA non-polymer . 'SODIUM ION' ? 'Na 1' 22.990 PSU 'RNA linking' n "PSEUDOURIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # _exptl.entry_id 1FIR _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 78.73 _exptl_crystal.density_Matthews 5.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 5.6 _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '50 mM MES-KOH pH 5.6, 1.6 to 1.8 M Li2SO4, 10 mM MgCl2, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 Li2SO4 ? ? ? 1 2 1 MgCl2 ? ? ? 1 3 1 MES-KOH ? ? ? 1 4 2 Li2SO4 ? ? ? 1 5 2 MgCl2 ? ? ? 1 6 2 MES-KOH ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 110 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1998-02-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9805 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ESRF BEAMLINE BM02' _diffrn_source.pdbx_wavelength 0.9805 _diffrn_source.pdbx_synchrotron_site ESRF _diffrn_source.pdbx_synchrotron_beamline BM02 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FIR _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 40.0 _reflns.d_resolution_high 3.30 _reflns.number_obs 6482 _reflns.number_all 6482 _reflns.percent_possible_obs 88.2 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0810000 _reflns.pdbx_netI_over_sigmaI 10.5 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 3.2 _reflns.R_free_details ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? # _reflns_shell.d_res_high 3.30 _reflns_shell.d_res_low 3.42 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 71.6 _reflns_shell.Rmerge_I_obs ? _reflns_shell.meanI_over_sigI_obs 4.3 _reflns_shell.pdbx_Rsym_value 0.1650000 _reflns_shell.pdbx_redundancy 2.2 _reflns_shell.number_unique_all 503 _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? # _refine.entry_id 1FIR _refine.ls_number_reflns_obs 5890 _refine.ls_number_reflns_all 6481 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF 836049.77 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 40.00 _refine.ls_d_res_high 3.30 _refine.ls_percent_reflns_obs 80.5 _refine.ls_R_factor_obs 0.1810000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1810000 _refine.ls_R_factor_R_free 0.2270000 _refine.ls_R_factor_R_free_error 0.010 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 9.2 _refine.ls_number_reflns_R_free 543 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 33.2 _refine.aniso_B[1][1] 4.53 _refine.aniso_B[2][2] 4.53 _refine.aniso_B[3][3] -9.07 _refine.aniso_B[1][2] 7.03 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details 'FLAT MODEL' _refine.solvent_model_param_ksol 0.03 _refine.solvent_model_param_bsol 34.19 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ;R and free R improved by 12% and 11% respectively by a proper mask definition (see primary ref.) ; _refine.pdbx_starting_model 4TNA _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values 'modified CNS libraries (Parkinson et al.)' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_overall_phase_error ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1FIR _refine_analyze.Luzzati_coordinate_error_obs 0.31 _refine_analyze.Luzzati_sigma_a_obs 0.21 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free 0.41 _refine_analyze.Luzzati_sigma_a_free 0.21 _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 1645 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 16 _refine_hist.number_atoms_total 1663 _refine_hist.d_res_high 3.30 _refine_hist.d_res_low 40.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.009 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.5 ? ? ? 'X-RAY DIFFRACTION' ? c_dihedral_angle_d 19.2 ? ? ? 'X-RAY DIFFRACTION' ? c_improper_angle_d 2.06 ? ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.30 _refine_ls_shell.d_res_low 3.51 _refine_ls_shell.number_reflns_R_work 666 _refine_ls_shell.R_factor_R_work 0.2210000 _refine_ls_shell.percent_reflns_obs 58.1 _refine_ls_shell.R_factor_R_free 0.2340000 _refine_ls_shell.R_factor_R_free_error 0.040 _refine_ls_shell.percent_reflns_R_free 4.9 _refine_ls_shell.number_reflns_R_free 34 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.R_factor_all ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 DNA-RNA-REP-RESIPARAM.BP DNA-RNA-RESITOP.BP 'X-RAY DIFFRACTION' 2 WATER_REP.PARAM WATER.TOP 'X-RAY DIFFRACTION' 3 ION.PARAM ION.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 1FIR _struct.title 'CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FIR _struct_keywords.pdbx_keywords RNA _struct_keywords.text ;mammalian transfert ribonucleic acid, HIV-1 primer tRNA, amino acid transport, canonical tRNA structure, canonical anticodon, frameshifting, codon/anticodon mimicry, modified bases, RNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A G 5 "O3'" ? ? ? 1_555 A 2MG 6 P ? ? A G 5 A 2MG 6 1_555 ? ? ? ? ? ? ? 1.615 ? ? covale2 covale both ? A 2MG 6 "O3'" ? ? ? 1_555 A A 7 P ? ? A 2MG 6 A A 7 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale3 covale both ? A A 9 "O3'" ? ? ? 1_555 A 2MG 10 P ? ? A A 9 A 2MG 10 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale4 covale both ? A 2MG 10 "O3'" ? ? ? 1_555 A C 11 P ? ? A 2MG 10 A C 11 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale5 covale both ? A G 15 "O3'" ? ? ? 1_555 A H2U 16 P ? ? A G 15 A H2U 16 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale6 covale both ? A H2U 16 "O3'" ? ? ? 1_555 A C 17 P ? ? A H2U 16 A C 17 1_555 ? ? ? ? ? ? ? 1.607 ? ? covale7 covale both ? A G 19 "O3'" A ? ? 1_555 A H2U 20 P A ? A G 19 A H2U 20 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale8 covale both ? A G 19 "O3'" B ? ? 1_555 A H2U 20 P B ? A G 19 A H2U 20 1_555 ? ? ? ? ? ? ? 1.588 ? ? covale9 covale both ? A H2U 20 "O3'" A ? ? 1_555 A A 21 P ? ? A H2U 20 A A 21 1_555 ? ? ? ? ? ? ? 1.609 ? ? covale10 covale both ? A H2U 20 "O3'" B ? ? 1_555 A A 21 P ? ? A H2U 20 A A 21 1_555 ? ? ? ? ? ? ? 1.624 ? ? covale11 covale both ? A A 26 "O3'" ? ? ? 1_555 A PSU 27 P ? ? A A 26 A PSU 27 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale12 covale both ? A PSU 27 "O3'" ? ? ? 1_555 A C 28 P ? ? A PSU 27 A C 28 1_555 ? ? ? ? ? ? ? 1.606 ? ? covale13 covale both ? A U 33 "O3'" ? ? ? 1_555 A 70U 34 P ? ? A U 33 A 70U 34 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale14 covale both ? A 70U 34 "O3'" ? ? ? 1_555 A U 35 P ? ? A 70U 34 A U 35 1_555 ? ? ? ? ? ? ? 1.602 ? ? covale15 covale both ? A U 36 "O3'" ? ? ? 1_555 A 12A 37 P ? ? A U 36 A 12A 37 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale16 covale both ? A 12A 37 "O3'" ? ? ? 1_555 A A 38 P ? ? A 12A 37 A A 38 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale17 covale both ? A A 38 "O3'" ? ? ? 1_555 A PSU 39 P ? ? A A 38 A PSU 39 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale18 covale both ? A PSU 39 "O3'" ? ? ? 1_555 A C 40 P ? ? A PSU 39 A C 40 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale19 covale both ? A G 45 "O3'" ? ? ? 1_555 A 7MG 46 P ? ? A G 45 A 7MG 46 1_555 ? ? ? ? ? ? ? 1.604 ? ? covale20 covale both ? A 7MG 46 "O3'" ? ? ? 1_555 A H2U 47 P ? ? A 7MG 46 A H2U 47 1_555 ? ? ? ? ? ? ? 1.587 ? ? covale21 covale both ? A H2U 47 "O3'" ? ? ? 1_555 A 5MC 48 P ? ? A H2U 47 A 5MC 48 1_555 ? ? ? ? ? ? ? 1.591 ? ? covale22 covale both ? A 5MC 48 "O3'" ? ? ? 1_555 A 5MC 49 P ? ? A 5MC 48 A 5MC 49 1_555 ? ? ? ? ? ? ? 1.598 ? ? covale23 covale both ? A 5MC 49 "O3'" ? ? ? 1_555 A A 50 P ? ? A 5MC 49 A A 50 1_555 ? ? ? ? ? ? ? 1.584 ? ? covale24 covale both ? A G 53 "O3'" ? ? ? 1_555 A 2MU 54 P ? ? A G 53 A 2MU 54 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale25 covale both ? A 2MU 54 "O3'" ? ? ? 1_555 A PSU 55 P ? ? A 2MU 54 A PSU 55 1_555 ? ? ? ? ? ? ? 1.586 ? ? covale26 covale both ? A PSU 55 "O3'" ? ? ? 1_555 A C 56 P ? ? A PSU 55 A C 56 1_555 ? ? ? ? ? ? ? 1.603 ? ? covale27 covale both ? A A 57 "O3'" ? ? ? 1_555 A 1MA 58 P ? ? A A 57 A 1MA 58 1_555 ? ? ? ? ? ? ? 1.610 ? ? covale28 covale both ? A 1MA 58 "O3'" ? ? ? 1_555 A G 59 P ? ? A 1MA 58 A G 59 1_555 ? ? ? ? ? ? ? 1.593 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 A C 72 N3 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 A C 72 O2 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 A C 72 N4 ? ? A G 1 A C 72 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A C 2 N3 ? ? ? 1_555 A G 71 N1 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A C 2 N4 ? ? ? 1_555 A G 71 O6 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A C 2 O2 ? ? ? 1_555 A G 71 N2 ? ? A C 2 A G 71 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A C 3 N3 ? ? ? 1_555 A G 70 N1 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A C 3 N4 ? ? ? 1_555 A G 70 O6 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A C 3 O2 ? ? ? 1_555 A G 70 N2 ? ? A C 3 A G 70 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A C 4 N3 ? ? ? 1_555 A G 69 N1 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A C 4 N4 ? ? ? 1_555 A G 69 O6 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A C 4 O2 ? ? ? 1_555 A G 69 N2 ? ? A C 4 A G 69 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A G 5 N1 ? ? ? 1_555 A C 68 N3 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A G 5 N2 ? ? ? 1_555 A C 68 O2 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A G 5 O6 ? ? ? 1_555 A C 68 N4 ? ? A G 5 A C 68 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A 2MG 6 N1 ? ? ? 1_555 A U 67 O2 ? ? A 2MG 6 A U 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog17 hydrog ? ? A 2MG 6 O6 ? ? ? 1_555 A U 67 N3 ? ? A 2MG 6 A U 67 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog18 hydrog ? ? A A 7 N1 ? ? ? 1_555 A U 66 N3 ? ? A A 7 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A A 7 N6 ? ? ? 1_555 A U 66 O4 ? ? A A 7 A U 66 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A U 8 N3 ? ? ? 1_555 A A 14 N7 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog21 hydrog ? ? A U 8 O2 ? ? ? 1_555 A A 14 N6 ? ? A U 8 A A 14 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog22 hydrog ? ? A A 9 N6 ? ? ? 1_555 A A 23 N7 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog23 hydrog ? ? A A 9 N7 ? ? ? 1_555 A A 23 N6 ? ? A A 9 A A 23 1_555 ? ? ? ? ? ? TYPE_2_PAIR ? ? ? hydrog24 hydrog ? ? A 2MG 10 N1 ? ? ? 1_555 A C 25 N3 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A 2MG 10 N2 ? ? ? 1_555 A C 25 O2 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A C 25 N4 ? ? A 2MG 10 A C 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A 2MG 10 O6 ? ? ? 1_555 A G 45 N2 ? ? A 2MG 10 A G 45 1_555 ? ? ? ? ? ? '2MG-G MISPAIR' ? ? ? hydrog28 hydrog ? ? A C 11 N3 ? ? ? 1_555 A G 24 N1 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A C 11 N4 ? ? ? 1_555 A G 24 O6 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A C 11 O2 ? ? ? 1_555 A G 24 N2 ? ? A C 11 A G 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A U 12 N3 ? ? ? 1_555 A A 23 N1 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A U 12 O4 ? ? ? 1_555 A A 23 N6 ? ? A U 12 A A 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 13 N3 ? ? ? 1_555 A G 22 N1 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 13 N4 ? ? ? 1_555 A G 22 O6 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog35 hydrog ? ? A C 13 O2 ? ? ? 1_555 A G 22 N2 ? ? A C 13 A G 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog36 hydrog ? ? A A 14 N6 ? ? ? 1_555 A A 21 N3 ? ? A A 14 A A 21 1_555 ? ? ? ? ? ? 'A-A MISPAIR' ? ? ? hydrog37 hydrog ? ? A G 15 N1 ? ? ? 1_555 A 5MC 48 O2 ? ? A G 15 A 5MC 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog38 hydrog ? ? A G 15 N2 ? ? ? 1_555 A 5MC 48 N3 ? ? A G 15 A 5MC 48 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog39 hydrog ? ? A G 18 N1 ? ? ? 1_555 A PSU 55 O4 ? ? A G 18 A PSU 55 1_555 ? ? ? ? ? ? 'G-PSU MISPAIR' ? ? ? hydrog40 hydrog ? ? A G 19 N1 A ? ? 1_555 A C 56 N3 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog41 hydrog ? ? A G 19 N2 A ? ? 1_555 A C 56 O2 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog42 hydrog ? ? A G 19 O6 A ? ? 1_555 A C 56 N4 ? ? A G 19 A C 56 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog43 hydrog ? ? A G 22 N7 ? ? ? 1_555 A 7MG 46 N1 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog44 hydrog ? ? A G 22 O6 ? ? ? 1_555 A 7MG 46 N2 ? ? A G 22 A 7MG 46 1_555 ? ? ? ? ? ? TYPE_7_PAIR ? ? ? hydrog45 hydrog ? ? A A 26 N1 ? ? ? 1_555 A G 44 N1 ? ? A A 26 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog46 hydrog ? ? A A 26 N6 ? ? ? 1_555 A G 44 O6 ? ? A A 26 A G 44 1_555 ? ? ? ? ? ? TYPE_8_PAIR ? ? ? hydrog47 hydrog ? ? A PSU 27 N3 ? ? ? 1_555 A A 43 N1 ? ? A PSU 27 A A 43 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog48 hydrog ? ? A PSU 27 O2 ? ? ? 1_555 A A 43 N6 ? ? A PSU 27 A A 43 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog49 hydrog ? ? A C 28 N3 ? ? ? 1_555 A G 42 N1 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog50 hydrog ? ? A C 28 N4 ? ? ? 1_555 A G 42 O6 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog51 hydrog ? ? A C 28 O2 ? ? ? 1_555 A G 42 N2 ? ? A C 28 A G 42 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog52 hydrog ? ? A A 29 N1 ? ? ? 1_555 A U 41 N3 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog53 hydrog ? ? A A 29 N6 ? ? ? 1_555 A U 41 O4 ? ? A A 29 A U 41 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog54 hydrog ? ? A G 30 N1 ? ? ? 1_555 A C 40 N3 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog55 hydrog ? ? A G 30 N2 ? ? ? 1_555 A C 40 O2 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog56 hydrog ? ? A G 30 O6 ? ? ? 1_555 A C 40 N4 ? ? A G 30 A C 40 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog57 hydrog ? ? A A 31 N1 ? ? ? 1_555 A PSU 39 N3 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog58 hydrog ? ? A A 31 N6 ? ? ? 1_555 A PSU 39 O2 ? ? A A 31 A PSU 39 1_555 ? ? ? ? ? ? 'REVERSED WATSON-CRICK' ? ? ? hydrog59 hydrog ? ? A C 32 O2 ? ? ? 1_555 A A 38 N6 ? ? A C 32 A A 38 1_555 ? ? ? ? ? ? 'C-A MISPAIR' ? ? ? hydrog60 hydrog ? ? A 5MC 49 N3 ? ? ? 1_555 A G 65 N1 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog61 hydrog ? ? A 5MC 49 N4 ? ? ? 1_555 A G 65 O6 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog62 hydrog ? ? A 5MC 49 O2 ? ? ? 1_555 A G 65 N2 ? ? A 5MC 49 A G 65 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog63 hydrog ? ? A A 50 N1 ? ? ? 1_555 A U 64 N3 ? ? A A 50 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog64 hydrog ? ? A A 50 N6 ? ? ? 1_555 A U 64 O4 ? ? A A 50 A U 64 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog65 hydrog ? ? A G 51 N1 ? ? ? 1_555 A C 63 N3 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog66 hydrog ? ? A G 51 N2 ? ? ? 1_555 A C 63 O2 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog67 hydrog ? ? A G 51 O6 ? ? ? 1_555 A C 63 N4 ? ? A G 51 A C 63 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog68 hydrog ? ? A G 51 N1 ? ? ? 1_555 A U 64 O2 ? ? A G 51 A U 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog69 hydrog ? ? A G 51 O6 ? ? ? 1_555 A U 64 N3 ? ? A G 51 A U 64 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog70 hydrog ? ? A G 52 N1 ? ? ? 1_555 A C 62 N3 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog71 hydrog ? ? A G 52 N2 ? ? ? 1_555 A C 62 O2 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog72 hydrog ? ? A G 52 O6 ? ? ? 1_555 A C 62 N4 ? ? A G 52 A C 62 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog73 hydrog ? ? A G 53 N1 ? ? ? 1_555 A C 61 N3 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog74 hydrog ? ? A G 53 N2 ? ? ? 1_555 A C 61 O2 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog75 hydrog ? ? A G 53 O6 ? ? ? 1_555 A C 61 N4 ? ? A G 53 A C 61 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog76 hydrog ? ? A 2MU 54 N3 ? ? ? 1_555 A 1MA 58 N7 ? ? A 2MU 54 A 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog77 hydrog ? ? A 2MU 54 O2 ? ? ? 1_555 A 1MA 58 N6 ? ? A 2MU 54 A 1MA 58 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? hydrog ? ? # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id NA _struct_site.pdbx_auth_seq_id 202 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 1 _struct_site.details 'BINDING SITE FOR RESIDUE NA A 202' # _struct_site_gen.id 1 _struct_site_gen.site_id AC1 _struct_site_gen.pdbx_num_res 1 _struct_site_gen.label_comp_id G _struct_site_gen.label_asym_id A _struct_site_gen.label_seq_id 42 _struct_site_gen.pdbx_auth_ins_code ? _struct_site_gen.auth_comp_id G _struct_site_gen.auth_asym_id A _struct_site_gen.auth_seq_id 42 _struct_site_gen.label_atom_id . _struct_site_gen.label_alt_id ? _struct_site_gen.symmetry 1_555 _struct_site_gen.details ? # _database_PDB_matrix.entry_id 1FIR _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1FIR _atom_sites.fract_transf_matrix[1][1] 0.009929 _atom_sites.fract_transf_matrix[1][2] 0.005732 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011464 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012105 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N NA O P S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 C 2 2 2 C C A . n A 1 3 C 3 3 3 C C A . n A 1 4 C 4 4 4 C C A . n A 1 5 G 5 5 5 G G A . n A 1 6 2MG 6 6 6 2MG 2MG A . n A 1 7 A 7 7 7 A A A . n A 1 8 U 8 8 8 U U A . n A 1 9 A 9 9 9 A A A . n A 1 10 2MG 10 10 10 2MG 2MG A . n A 1 11 C 11 11 11 C C A . n A 1 12 U 12 12 12 U U A . n A 1 13 C 13 13 13 C C A . n A 1 14 A 14 14 14 A A A . n A 1 15 G 15 15 15 G G A . n A 1 16 H2U 16 16 16 H2U DHU A . n A 1 17 C 17 17 17 C C A . n A 1 18 G 18 18 18 G G A . n A 1 19 G 19 19 19 G G A . n A 1 20 H2U 20 20 20 H2U DHU A . n A 1 21 A 21 21 21 A A A . n A 1 22 G 22 22 22 G G A . n A 1 23 A 23 23 23 A A A . n A 1 24 G 24 24 24 G G A . n A 1 25 C 25 25 25 C C A . n A 1 26 A 26 26 26 A A A . n A 1 27 PSU 27 27 27 PSU PSU A . n A 1 28 C 28 28 28 C C A . n A 1 29 A 29 29 29 A A A . n A 1 30 G 30 30 30 G G A . n A 1 31 A 31 31 31 A A A . n A 1 32 C 32 32 32 C C A . n A 1 33 U 33 33 33 U U A . n A 1 34 70U 34 34 34 70U 70U A . n A 1 35 U 35 35 35 U U A . n A 1 36 U 36 36 36 U U A . n A 1 37 12A 37 37 37 12A 12A A . n A 1 38 A 38 38 38 A A A . n A 1 39 PSU 39 39 39 PSU PSU A . n A 1 40 C 40 40 40 C C A . n A 1 41 U 41 41 41 U U A . n A 1 42 G 42 42 42 G G A . n A 1 43 A 43 43 43 A A A . n A 1 44 G 44 44 44 G G A . n A 1 45 G 45 45 45 G G A . n A 1 46 7MG 46 46 46 7MG 7MG A . n A 1 47 H2U 47 47 47 H2U DHU A . n A 1 48 5MC 48 48 48 5MC 5MC A . n A 1 49 5MC 49 49 49 5MC 5MC A . n A 1 50 A 50 50 50 A A A . n A 1 51 G 51 51 51 G G A . n A 1 52 G 52 52 52 G G A . n A 1 53 G 53 53 53 G G A . n A 1 54 2MU 54 54 54 2MU 2MU A . n A 1 55 PSU 55 55 55 PSU PSU A . n A 1 56 C 56 56 56 C C A . n A 1 57 A 57 57 57 A A A . n A 1 58 1MA 58 58 58 1MA 1MA A . n A 1 59 G 59 59 59 G G A . n A 1 60 U 60 60 60 U U A . n A 1 61 C 61 61 61 C C A . n A 1 62 C 62 62 62 C C A . n A 1 63 C 63 63 63 C C A . n A 1 64 U 64 64 64 U U A . n A 1 65 G 65 65 65 G G A . n A 1 66 U 66 66 66 U U A . n A 1 67 U 67 67 67 U U A . n A 1 68 C 68 68 68 C C A . n A 1 69 G 69 69 69 G G A . n A 1 70 G 70 70 70 G G A . n A 1 71 G 71 71 71 G G A . n A 1 72 C 72 72 72 C C A . n A 1 73 G 73 73 73 G G A . n A 1 74 C 74 74 74 C C A . n A 1 75 C 75 75 75 C C A . n A 1 76 A 76 76 76 A A A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 MG 1 201 201 MG MG A . C 3 NA 1 202 202 NA NA A . D 4 HOH 1 301 301 HOH HOH A . D 4 HOH 2 302 302 HOH HOH A . D 4 HOH 3 303 303 HOH HOH A . D 4 HOH 4 304 304 HOH HOH A . D 4 HOH 5 305 305 HOH HOH A . D 4 HOH 6 306 306 HOH HOH A . D 4 HOH 7 307 307 HOH HOH A . D 4 HOH 8 308 308 HOH HOH A . D 4 HOH 9 309 309 HOH HOH A . D 4 HOH 10 310 310 HOH HOH A . D 4 HOH 11 311 311 HOH HOH A . D 4 HOH 12 312 312 HOH HOH A . D 4 HOH 13 313 313 HOH HOH A . D 4 HOH 14 314 314 HOH HOH A . D 4 HOH 15 315 315 HOH HOH A . D 4 HOH 16 316 316 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A 2MG 6 A 2MG 6 ? G "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 2 A 2MG 10 A 2MG 10 ? G "2N-METHYLGUANOSINE-5'-MONOPHOSPHATE" 3 A H2U 16 A H2U 16 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 4 A H2U 20 A H2U 20 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 5 A PSU 27 A PSU 27 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 6 A 70U 34 A 70U 34 ? U ? 7 A 12A 37 A 12A 37 ? A ? 8 A PSU 39 A PSU 39 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 9 A 7MG 46 A 7MG 46 ? G ? 10 A H2U 47 A H2U 47 ? U "5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE" 11 A 5MC 48 A 5MC 48 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 12 A 5MC 49 A 5MC 49 ? C "5-METHYLCYTIDINE-5'-MONOPHOSPHATE" 13 A 2MU 54 A 2MU 54 ? U "2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE" 14 A PSU 55 A PSU 55 ? U "PSEUDOURIDINE-5'-MONOPHOSPHATE" 15 A 1MA 58 A 1MA 58 ? A ? # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-01-17 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2014-04-09 5 'Structure model' 1 4 2018-04-04 6 'Structure model' 1 5 2018-04-11 7 'Structure model' 1 6 2023-08-02 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Non-polymer description' 3 3 'Structure model' 'Version format compliance' 4 4 'Structure model' 'Derived calculations' 5 5 'Structure model' 'Data collection' 6 6 'Structure model' 'Data collection' 7 7 'Structure model' 'Database references' 8 7 'Structure model' 'Derived calculations' 9 7 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 5 'Structure model' diffrn_source 2 6 'Structure model' diffrn_source 3 7 'Structure model' database_2 4 7 'Structure model' pdbx_initial_refinement_model 5 7 'Structure model' struct_conn 6 7 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 5 'Structure model' '_diffrn_source.type' 2 6 'Structure model' '_diffrn_source.pdbx_synchrotron_beamline' 3 7 'Structure model' '_database_2.pdbx_DOI' 4 7 'Structure model' '_database_2.pdbx_database_accession' 5 7 'Structure model' '_struct_conn.pdbx_dist_value' 6 7 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 7 7 'Structure model' '_struct_conn.pdbx_ptnr1_label_alt_id' 8 7 'Structure model' '_struct_conn.pdbx_ptnr2_label_alt_id' 9 7 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 10 7 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 11 7 'Structure model' '_struct_conn.ptnr1_label_atom_id' 12 7 'Structure model' '_struct_conn.ptnr1_label_comp_id' 13 7 'Structure model' '_struct_conn.ptnr1_label_seq_id' 14 7 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 15 7 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 16 7 'Structure model' '_struct_conn.ptnr2_label_atom_id' 17 7 'Structure model' '_struct_conn.ptnr2_label_comp_id' 18 7 'Structure model' '_struct_conn.ptnr2_label_seq_id' 19 7 'Structure model' '_struct_site.pdbx_auth_asym_id' 20 7 'Structure model' '_struct_site.pdbx_auth_comp_id' 21 7 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal AMoRE phasing . ? 1 CNS refinement 0.4 ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 "O4'" _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 U _pdbx_validate_close_contact.auth_seq_id_1 8 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 "O2'" _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 5MC _pdbx_validate_close_contact.auth_seq_id_2 48 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.17 # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 P _pdbx_validate_rmsd_bond.auth_asym_id_1 A _pdbx_validate_rmsd_bond.auth_comp_id_1 G _pdbx_validate_rmsd_bond.auth_seq_id_1 1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 OP3 _pdbx_validate_rmsd_bond.auth_asym_id_2 A _pdbx_validate_rmsd_bond.auth_comp_id_2 G _pdbx_validate_rmsd_bond.auth_seq_id_2 1 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.526 _pdbx_validate_rmsd_bond.bond_target_value 1.607 _pdbx_validate_rmsd_bond.bond_deviation -0.081 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.012 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 N9 A A 9 ? ? "C1'" A A 9 ? ? "C2'" A A 9 ? ? 122.10 114.00 8.10 1.30 N 2 1 N1 A C 17 ? ? "C1'" A C 17 ? ? "C2'" A C 17 ? ? 123.59 114.00 9.59 1.30 N 3 1 "O4'" A G 19 ? B "C1'" A G 19 ? B N9 A G 19 ? B 113.54 108.50 5.04 0.70 N 4 1 "C2'" A U 60 ? ? "C3'" A U 60 ? ? "O3'" A U 60 ? ? 131.39 113.70 17.69 1.60 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 G A 5 ? ? 0.052 'SIDE CHAIN' 2 1 G A 42 ? ? 0.054 'SIDE CHAIN' # _pdbx_validate_chiral.id 1 _pdbx_validate_chiral.PDB_model_num 1 _pdbx_validate_chiral.auth_atom_id "C3'" _pdbx_validate_chiral.label_alt_id ? _pdbx_validate_chiral.auth_asym_id A _pdbx_validate_chiral.auth_comp_id U _pdbx_validate_chiral.auth_seq_id 60 _pdbx_validate_chiral.PDB_ins_code ? _pdbx_validate_chiral.details PLANAR _pdbx_validate_chiral.omega . # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1FIR 'double helix' 1FIR 'a-form double helix' 1FIR 'parallel strands' 1FIR 'hairpin loop' 1FIR 'mismatched base pair' 1FIR 'four-way junction' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 A C 72 1_555 -0.243 -0.280 0.210 3.841 -1.781 4.417 1 A_G1:C72_A A 1 ? A 72 ? 19 1 1 A C 2 1_555 A G 71 1_555 0.238 -0.182 -0.452 5.120 -8.160 3.212 2 A_C2:G71_A A 2 ? A 71 ? 19 1 1 A C 3 1_555 A G 70 1_555 0.338 -0.236 -0.212 2.675 -7.934 3.900 3 A_C3:G70_A A 3 ? A 70 ? 19 1 1 A C 4 1_555 A G 69 1_555 0.266 -0.150 -0.075 10.210 -7.274 -1.297 4 A_C4:G69_A A 4 ? A 69 ? 19 1 1 A G 5 1_555 A C 68 1_555 -0.065 -0.118 0.759 8.525 -2.386 -0.411 5 A_G5:C68_A A 5 ? A 68 ? 19 1 1 A 2MG 6 1_555 A U 67 1_555 -2.018 -0.272 0.234 2.496 1.954 6.154 6 A_2MG6:U67_A A 6 ? A 67 ? 28 1 1 A A 7 1_555 A U 66 1_555 -0.062 -0.038 -0.439 -6.536 12.708 3.730 7 A_A7:U66_A A 7 ? A 66 ? 20 1 1 A 5MC 49 1_555 A G 65 1_555 -0.005 -0.165 0.949 -18.204 9.312 2.082 8 A_5MC49:G65_A A 49 ? A 65 ? 19 1 1 A A 50 1_555 A U 64 1_555 0.001 -0.190 -0.615 -0.463 2.493 7.791 9 A_A50:U64_A A 50 ? A 64 ? 20 1 1 A G 51 1_555 A C 63 1_555 0.093 -0.363 -1.227 -7.667 -2.276 -1.821 10 A_G51:C63_A A 51 ? A 63 ? 19 1 1 A G 52 1_555 A C 62 1_555 -0.012 -0.015 -0.531 -19.480 -7.346 3.679 11 A_G52:C62_A A 52 ? A 62 ? 19 1 1 A G 53 1_555 A C 61 1_555 -0.291 -0.012 -0.576 -23.600 -9.300 1.641 12 A_G53:C61_A A 53 ? A 61 ? 19 1 1 A 2MU 54 1_555 A 1MA 58 1_555 4.646 -2.355 0.366 -3.881 3.721 -104.032 13 A_2MU54:1MA58_A A 54 ? A 58 ? 24 4 1 A PSU 55 1_555 A G 18 1_555 0.392 -5.318 0.345 20.730 21.614 -100.558 14 A_PSU55:G18_A A 55 ? A 18 ? ? 2 1 A A 38 1_555 A C 32 1_555 -3.743 -1.229 1.873 23.453 7.908 -35.547 15 A_A38:C32_A A 38 ? A 32 ? ? 1 1 A PSU 39 1_555 A A 31 1_555 -0.369 -0.077 -0.193 21.782 -16.655 -5.313 16 A_PSU39:A31_A A 39 ? A 31 ? 21 1 1 A C 40 1_555 A G 30 1_555 0.195 -0.091 0.029 8.637 -9.933 1.608 17 A_C40:G30_A A 40 ? A 30 ? 19 1 1 A U 41 1_555 A A 29 1_555 0.205 -0.309 0.037 1.048 2.321 9.797 18 A_U41:A29_A A 41 ? A 29 ? 20 1 1 A G 42 1_555 A C 28 1_555 -0.271 -0.597 1.227 4.233 -3.656 -1.741 19 A_G42:C28_A A 42 ? A 28 ? 19 1 1 A A 43 1_555 A PSU 27 1_555 0.139 -0.174 1.076 -7.915 -8.028 -10.890 20 A_A43:PSU27_A A 43 ? A 27 ? 21 1 1 A G 44 1_555 A A 26 1_555 0.032 1.770 0.446 -24.905 -14.294 -33.470 21 A_G44:A26_A A 44 ? A 26 ? 8 ? 1 A 2MG 10 1_555 A C 25 1_555 -0.291 -0.256 -0.368 5.624 -6.816 4.141 22 A_2MG10:C25_A A 10 ? A 25 ? 19 1 1 A C 11 1_555 A G 24 1_555 0.084 -0.252 -0.270 -10.757 -7.794 -2.697 23 A_C11:G24_A A 11 ? A 24 ? 19 1 1 A U 12 1_555 A A 23 1_555 0.009 -0.038 0.438 -18.503 -4.956 -2.429 24 A_U12:A23_A A 12 ? A 23 ? 20 1 1 A C 13 1_555 A G 22 1_555 0.116 -0.131 -0.322 6.631 -5.813 2.590 25 A_C13:G22_A A 13 ? A 22 ? 19 1 1 A A 14 1_555 A A 21 1_555 -6.318 -0.416 -0.290 9.735 -3.042 57.790 26 A_A14:A21_A A 14 ? A 21 ? ? 5 1 A G 15 1_555 A 5MC 48 1_555 -0.038 4.107 0.217 12.048 5.652 152.650 27 A_G15:5MC48_A A 15 ? A 48 ? 22 2 1 A G 19 1_555 A C 56 1_555 0.533 -0.279 -0.374 -22.837 -9.467 1.037 28 A_G19:C56_A A 19 ? A 56 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 A C 72 1_555 A C 2 1_555 A G 71 1_555 -0.416 -1.802 3.251 5.415 5.409 25.759 -5.171 2.188 2.682 11.805 -11.817 26.854 1 AA_G1C2:G71C72_AA A 1 ? A 72 ? A 2 ? A 71 ? 1 A C 2 1_555 A G 71 1_555 A C 3 1_555 A G 70 1_555 0.084 -1.880 3.197 -1.418 10.946 33.078 -4.622 -0.333 2.464 18.593 2.409 34.822 2 AA_C2C3:G70G71_AA A 2 ? A 71 ? A 3 ? A 70 ? 1 A C 3 1_555 A G 70 1_555 A C 4 1_555 A G 69 1_555 -0.195 -1.523 3.154 0.492 6.536 33.090 -3.603 0.409 2.807 11.338 -0.854 33.715 3 AA_C3C4:G69G70_AA A 3 ? A 70 ? A 4 ? A 69 ? 1 A C 4 1_555 A G 69 1_555 A G 5 1_555 A C 68 1_555 -0.270 -2.013 2.851 -6.558 13.794 29.726 -5.234 -0.351 1.788 24.924 11.850 33.341 4 AA_C4G5:C68G69_AA A 4 ? A 69 ? A 5 ? A 68 ? 1 A G 5 1_555 A C 68 1_555 A 2MG 6 1_555 A U 67 1_555 0.605 -2.204 2.995 -1.453 6.038 29.222 -5.336 -1.428 2.467 11.800 2.839 29.861 5 AA_G52MG6:U67C68_AA A 5 ? A 68 ? A 6 ? A 67 ? 1 A 2MG 6 1_555 A U 67 1_555 A A 7 1_555 A U 66 1_555 -0.422 -1.821 3.198 4.878 11.006 36.320 -4.021 1.194 2.487 17.088 -7.574 38.200 6 AA_2MG6A7:U66U67_AA A 6 ? A 67 ? A 7 ? A 66 ? 1 A A 7 1_555 A U 66 1_555 A 5MC 49 1_555 A G 65 1_555 -0.646 -2.231 3.674 -6.718 -3.672 35.614 -2.971 -0.064 3.930 -5.919 10.829 36.401 7 AA_A75MC49:G65U66_AA A 7 ? A 66 ? A 49 ? A 65 ? 1 A 5MC 49 1_555 A G 65 1_555 A A 50 1_555 A U 64 1_555 0.082 -2.313 2.736 11.748 -1.969 29.368 -3.927 1.731 2.715 -3.697 -22.062 31.642 8 AA_5MC49A50:U64G65_AA A 49 ? A 65 ? A 50 ? A 64 ? 1 A A 50 1_555 A U 64 1_555 A G 51 1_555 A C 63 1_555 -0.745 -1.253 3.273 1.217 16.041 35.002 -3.746 1.272 2.462 25.098 -1.904 38.416 9 AA_A50G51:C63U64_AA A 50 ? A 64 ? A 51 ? A 63 ? 1 A G 51 1_555 A C 63 1_555 A G 52 1_555 A C 62 1_555 0.518 -1.360 3.610 -5.233 7.944 26.970 -4.621 -2.278 2.947 16.400 10.803 28.569 10 AA_G51G52:C62C63_AA A 51 ? A 63 ? A 52 ? A 62 ? 1 A G 52 1_555 A C 62 1_555 A G 53 1_555 A C 61 1_555 0.652 -2.186 3.595 2.913 5.328 33.710 -4.600 -0.623 3.265 9.095 -4.972 34.236 11 AA_G52G53:C61C62_AA A 52 ? A 62 ? A 53 ? A 61 ? 1 A G 53 1_555 A C 61 1_555 A 2MU 54 1_555 A 1MA 58 1_555 -1.997 -2.051 2.892 -4.797 -2.374 93.192 -1.370 1.293 3.008 -1.633 3.299 93.310 12 AA_G532MU54:1MA58C61_AA A 53 ? A 61 ? A 54 ? A 58 ? 1 A 2MU 54 1_555 A 1MA 58 1_555 A PSU 55 1_555 A G 18 1_555 2.175 -2.112 3.625 16.435 0.864 33.694 -3.438 -0.672 4.158 1.393 -26.483 37.394 13 AA_2MU54PSU55:G181MA58_AA A 54 ? A 58 ? A 55 ? A 18 ? 1 A A 38 1_555 A C 32 1_555 A PSU 39 1_555 A A 31 1_555 1.665 -1.878 3.912 4.529 6.362 40.313 -3.498 -1.793 3.744 9.128 -6.498 41.031 14 AA_A38PSU39:A31C32_AA A 38 ? A 32 ? A 39 ? A 31 ? 1 A PSU 39 1_555 A A 31 1_555 A C 40 1_555 A G 30 1_555 0.393 -1.586 3.655 -0.564 6.396 44.353 -2.712 -0.572 3.401 8.420 0.743 44.792 15 AA_PSU39C40:G30A31_AA A 39 ? A 31 ? A 40 ? A 30 ? 1 A C 40 1_555 A G 30 1_555 A U 41 1_555 A A 29 1_555 0.498 -1.742 3.262 1.218 6.543 27.926 -4.903 -0.746 2.808 13.319 -2.480 28.693 16 AA_C40U41:A29G30_AA A 40 ? A 30 ? A 41 ? A 29 ? 1 A U 41 1_555 A A 29 1_555 A G 42 1_555 A C 28 1_555 -0.055 -1.902 2.585 -5.585 9.354 29.712 -4.718 -0.631 1.893 17.516 10.458 31.604 17 AA_U41G42:C28A29_AA A 41 ? A 29 ? A 42 ? A 28 ? 1 A G 42 1_555 A C 28 1_555 A A 43 1_555 A PSU 27 1_555 -0.059 -2.118 3.336 5.029 -0.889 38.581 -3.069 0.715 3.348 -1.338 -7.571 38.905 18 AA_G42A43:PSU27C28_AA A 42 ? A 28 ? A 43 ? A 27 ? 1 A A 43 1_555 A PSU 27 1_555 A G 44 1_555 A A 26 1_555 -1.260 -1.998 3.334 5.673 8.740 29.813 -5.141 3.269 2.393 16.371 -10.626 31.542 19 AA_A43G44:A26PSU27_AA A 43 ? A 27 ? A 44 ? A 26 ? 1 A G 44 1_555 A A 26 1_555 A 2MG 10 1_555 A C 25 1_555 -2.604 -3.575 2.757 20.055 1.955 65.353 -3.248 2.879 1.887 1.768 -18.130 68.059 20 AA_G442MG10:C25A26_AA A 44 ? A 26 ? A 10 ? A 25 ? 1 A 2MG 10 1_555 A C 25 1_555 A C 11 1_555 A G 24 1_555 -0.812 -1.696 3.523 -2.186 14.042 32.398 -4.844 1.020 2.634 23.790 3.703 35.301 21 AA_2MG10C11:G24C25_AA A 10 ? A 25 ? A 11 ? A 24 ? 1 A C 11 1_555 A G 24 1_555 A U 12 1_555 A A 23 1_555 -0.043 -1.053 3.655 -1.963 5.178 38.679 -2.259 -0.195 3.489 7.769 2.946 39.058 22 AA_C11U12:A23G24_AA A 11 ? A 24 ? A 12 ? A 23 ? 1 A U 12 1_555 A A 23 1_555 A C 13 1_555 A G 22 1_555 1.308 -1.712 2.500 7.139 -0.051 29.093 -3.306 -1.332 2.739 -0.100 -13.947 29.938 23 AA_U12C13:G22A23_AA A 12 ? A 23 ? A 13 ? A 22 ? 1 A C 13 1_555 A G 22 1_555 A A 14 1_555 A A 21 1_555 2.863 -3.359 3.171 -9.509 8.125 -7.304 0.719 -3.395 5.363 -38.870 -45.490 -14.477 24 AA_C13A14:A21G22_AA A 13 ? A 22 ? A 14 ? A 21 ? 1 A A 14 1_555 A A 21 1_555 A G 15 1_555 A 5MC 48 1_555 0.336 -0.481 3.583 -9.513 -4.405 7.107 3.379 -13.533 1.930 -23.512 50.775 12.660 25 AA_A14G15:5MC48A21_AA A 14 ? A 21 ? A 15 ? A 48 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 'SODIUM ION' NA 4 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 4TNA _pdbx_initial_refinement_model.details ? #