HEADER RNA 06-AUG-00 1FIR TITLE CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3); COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS, BOVINES AND SOURCE 6 CHICKENS KEYWDS MAMMALIAN TRANSFERT RIBONUCLEIC ACID, HIV-1 PRIMER TRNA, AMINO ACID KEYWDS 2 TRANSPORT, CANONICAL TRNA STRUCTURE, CANONICAL ANTICODON, KEYWDS 3 FRAMESHIFTING, CODON/ANTICODON MIMICRY, MODIFIED BASES, RNA EXPDTA X-RAY DIFFRACTION AUTHOR P.BENAS,P.DUMAS REVDAT 7 02-AUG-23 1FIR 1 REMARK LINK REVDAT 6 11-APR-18 1FIR 1 REMARK REVDAT 5 04-APR-18 1FIR 1 REMARK REVDAT 4 09-APR-14 1FIR 1 LINK REMARK REVDAT 3 13-JUL-11 1FIR 1 VERSN REVDAT 2 24-FEB-09 1FIR 1 VERSN REVDAT 1 17-JAN-01 1FIR 0 JRNL AUTH P.BENAS,G.BEC,G.KEITH,R.MARQUET,C.EHRESMANN,B.EHRESMANN, JRNL AUTH 2 P.DUMAS JRNL TITL THE CRYSTAL STRUCTURE OF HIV REVERSE-TRANSCRIPTION PRIMER JRNL TITL 2 TRNA(LYS,3) SHOWS A CANONICAL ANTICODON LOOP. JRNL REF RNA V. 6 1347 2000 JRNL REFN ISSN 1355-8382 JRNL PMID 11073212 JRNL DOI 10.1017/S1355838200000911 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BENAS,P.DUMAS REMARK 1 TITL MOLECULAR BLOCS IN TRNAS THAT COULD PREVENT +1 FRAMESHIFTING REMARK 1 REF TO BE PUBLISHED 2000 REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH P.BENAS REMARK 1 TITL STUDIES ON THE TERNARY INITIATION COMPLEX OF HIV-1 REVERSE REMARK 1 TITL 2 TRANSCRIPTION AND CRYSTALLOGRAPHIC STRUCTURES OF TWO REMARK 1 TITL 3 PARTNERS REMARK 1 REF THESIS 1 2000 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MODIFIED CNS LIBRARIES (PARKINSON ET AL.) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 836049.770 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.5 REMARK 3 NUMBER OF REFLECTIONS : 5890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 543 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 666 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 34 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1645 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.53000 REMARK 3 B22 (A**2) : 4.53000 REMARK 3 B33 (A**2) : -9.07000 REMARK 3 B12 (A**2) : 7.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.03 REMARK 3 BSOL : 34.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : DNA-RNA-REP-RESIPARAM.BP REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : DNA-RNA-RESITOP.BP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 R AND FREE R IMPROVED BY 12% AND 11% RESPECTIVELY BY A PROPER REMARK 3 MASK DEFINITION (SEE PRIMARY REF.) REMARK 4 REMARK 4 1FIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000011622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9805 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6482 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16500 REMARK 200 <I/SIGMA(I)> FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 4TNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES-KOH PH 5.6, 1.6 TO 1.8 M REMARK 280 LI2SO4, 10 MM MGCL2, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.07333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.53667 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 27.53667 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.07333 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4' U A 8 O2' 5MC A 48 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 9 N9 - C1' - C2' ANGL. DEV. = 8.1 DEGREES REMARK 500 C A 17 N1 - C1' - C2' ANGL. DEV. = 9.6 DEGREES REMARK 500 G A 19 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 U A 60 C2' - C3' - O3' ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A 5 0.05 SIDE CHAIN REMARK 500 G A 42 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 DBREF 1FIR A 1 76 PDB 1FIR 1FIR 1 76 SEQRES 1 A 76 G C C C G 2MG A U A 2MG C U C SEQRES 2 A 76 A G H2U C G G H2U A G A G C A SEQRES 3 A 76 PSU C A G A C U 70U U U 12A A PSU SEQRES 4 A 76 C U G A G G 7MG H2U 5MC 5MC A G G SEQRES 5 A 76 G 2MU PSU C A 1MA G U C C C U G SEQRES 6 A 76 U U C G G G C G C C A MODRES 1FIR 2MG A 6 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1FIR 2MG A 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1FIR H2U A 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1FIR H2U A 20 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1FIR PSU A 27 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 70U A 34 U MODRES 1FIR 12A A 37 A MODRES 1FIR PSU A 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 7MG A 46 G MODRES 1FIR H2U A 47 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 5MC A 48 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1FIR 5MC A 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1FIR 2MU A 54 U 2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE MODRES 1FIR PSU A 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 1MA A 58 A HET 2MG A 6 24 HET 2MG A 10 24 HET H2U A 16 20 HET H2U A 20 40 HET PSU A 27 20 HET 70U A 34 25 HET 12A A 37 34 HET PSU A 39 20 HET 7MG A 46 24 HET H2U A 47 20 HET 5MC A 48 21 HET 5MC A 49 21 HET 2MU A 54 22 HET PSU A 55 20 HET 1MA A 58 23 HET MG A 201 1 HET NA A 202 1 HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 70U 5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'- HETNAM 2 70U MONOPHOSPHATE HETNAM 12A 2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE- HETNAM 2 12A 5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 2MU 2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 1 2MG 2(C11 H16 N5 O8 P) FORMUL 1 H2U 3(C9 H15 N2 O9 P) FORMUL 1 PSU 3(C9 H13 N2 O9 P) FORMUL 1 70U C12 H17 N2 O10 P S FORMUL 1 12A C16 H23 N6 O11 P S FORMUL 1 7MG C11 H18 N5 O8 P FORMUL 1 5MC 2(C10 H16 N3 O8 P) FORMUL 1 2MU C11 H17 N2 O9 P FORMUL 1 1MA C11 H16 N5 O7 P FORMUL 2 MG MG 2+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *16(H2 O) LINK O3' G A 5 P 2MG A 6 1555 1555 1.62 LINK O3' 2MG A 6 P A A 7 1555 1555 1.60 LINK O3' A A 9 P 2MG A 10 1555 1555 1.59 LINK O3' 2MG A 10 P C A 11 1555 1555 1.60 LINK O3' G A 15 P H2U A 16 1555 1555 1.60 LINK O3' H2U A 16 P C A 17 1555 1555 1.61 LINK O3'A G A 19 P AH2U A 20 1555 1555 1.59 LINK O3'B G A 19 P BH2U A 20 1555 1555 1.59 LINK O3'AH2U A 20 P A A 21 1555 1555 1.61 LINK O3'BH2U A 20 P A A 21 1555 1555 1.62 LINK O3' A A 26 P PSU A 27 1555 1555 1.60 LINK O3' PSU A 27 P C A 28 1555 1555 1.61 LINK O3' U A 33 P 70U A 34 1555 1555 1.60 LINK O3' 70U A 34 P U A 35 1555 1555 1.60 LINK O3' U A 36 P 12A A 37 1555 1555 1.60 LINK O3' 12A A 37 P A A 38 1555 1555 1.60 LINK O3' A A 38 P PSU A 39 1555 1555 1.60 LINK O3' PSU A 39 P C A 40 1555 1555 1.61 LINK O3' G A 45 P 7MG A 46 1555 1555 1.60 LINK O3' 7MG A 46 P H2U A 47 1555 1555 1.59 LINK O3' H2U A 47 P 5MC A 48 1555 1555 1.59 LINK O3' 5MC A 48 P 5MC A 49 1555 1555 1.60 LINK O3' 5MC A 49 P A A 50 1555 1555 1.58 LINK O3' G A 53 P 2MU A 54 1555 1555 1.60 LINK O3' 2MU A 54 P PSU A 55 1555 1555 1.59 LINK O3' PSU A 55 P C A 56 1555 1555 1.60 LINK O3' A A 57 P 1MA A 58 1555 1555 1.61 LINK O3' 1MA A 58 P G A 59 1555 1555 1.59 SITE 1 AC1 1 G A 42 CRYST1 100.720 100.720 82.610 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009929 0.005732 0.000000 0.00000 SCALE2 0.000000 0.011464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012105 0.00000