HEADER RNA 06-AUG-00 1FIR TITLE CRYSTAL STRUCTURE OF HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3) COMPND MOL_ID: 1; COMPND 2 MOLECULE: HIV-1 REVERSE TRANSCRIPTION PRIMER TRNA(LYS3); COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: CATTLE; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 OTHER_DETAILS: THIS SEQUENCE OCCURS NATURALLY IN HUMANS, BOVINES AND SOURCE 6 CHICKENS KEYWDS MAMMALIAN TRANSFERT RIBONUCLEIC ACID, HIV-1 PRIMER TRNA, AMINO ACID KEYWDS 2 TRANSPORT, CANONICAL TRNA STRUCTURE, CANONICAL ANTICODON, KEYWDS 3 FRAMESHIFTING, CODON/ANTICODON MIMICRY, MODIFIED BASES, RNA EXPDTA X-RAY DIFFRACTION AUTHOR P.BENAS,P.DUMAS REVDAT 7 02-AUG-23 1FIR 1 REMARK LINK REVDAT 6 11-APR-18 1FIR 1 REMARK REVDAT 5 04-APR-18 1FIR 1 REMARK REVDAT 4 09-APR-14 1FIR 1 LINK REMARK REVDAT 3 13-JUL-11 1FIR 1 VERSN REVDAT 2 24-FEB-09 1FIR 1 VERSN REVDAT 1 17-JAN-01 1FIR 0 JRNL AUTH P.BENAS,G.BEC,G.KEITH,R.MARQUET,C.EHRESMANN,B.EHRESMANN, JRNL AUTH 2 P.DUMAS JRNL TITL THE CRYSTAL STRUCTURE OF HIV REVERSE-TRANSCRIPTION PRIMER JRNL TITL 2 TRNA(LYS,3) SHOWS A CANONICAL ANTICODON LOOP. JRNL REF RNA V. 6 1347 2000 JRNL REFN ISSN 1355-8382 JRNL PMID 11073212 JRNL DOI 10.1017/S1355838200000911 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.BENAS,P.DUMAS REMARK 1 TITL MOLECULAR BLOCS IN TRNAS THAT COULD PREVENT +1 FRAMESHIFTING REMARK 1 REF TO BE PUBLISHED 2000 REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH P.BENAS REMARK 1 TITL STUDIES ON THE TERNARY INITIATION COMPLEX OF HIV-1 REVERSE REMARK 1 TITL 2 TRANSCRIPTION AND CRYSTALLOGRAPHIC STRUCTURES OF TWO REMARK 1 TITL 3 PARTNERS REMARK 1 REF THESIS 1 2000 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.4 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : MODIFIED CNS LIBRARIES (PARKINSON ET AL.) REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 3.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 836049.770 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 80.5 REMARK 3 NUMBER OF REFLECTIONS : 5890 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.227 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 9.200 REMARK 3 FREE R VALUE TEST SET COUNT : 543 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.010 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.30 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.51 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 58.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 666 REMARK 3 BIN R VALUE (WORKING SET) : 0.2210 REMARK 3 BIN FREE R VALUE : 0.2340 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 34 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.040 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 0 REMARK 3 NUCLEIC ACID ATOMS : 1645 REMARK 3 HETEROGEN ATOMS : 2 REMARK 3 SOLVENT ATOMS : 16 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.53000 REMARK 3 B22 (A**2) : 4.53000 REMARK 3 B33 (A**2) : -9.07000 REMARK 3 B12 (A**2) : 7.03000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.31 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.41 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.21 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.500 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 19.20 REMARK 3 IMPROPER ANGLES (DEGREES) : 2.060 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.03 REMARK 3 BSOL : 34.19 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : DNA-RNA-REP-RESIPARAM.BP REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : ION.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : DNA-RNA-RESITOP.BP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : ION.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 R AND FREE R IMPROVED BY 12% AND 11% RESPECTIVELY BY A PROPER REMARK 3 MASK DEFINITION (SEE PRIMARY REF.) REMARK 4 REMARK 4 1FIR COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY NDB. REMARK 100 THE DEPOSITION ID IS D_1000011622. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 02-FEB-98 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9805 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 6482 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.300 REMARK 200 RESOLUTION RANGE LOW (A) : 40.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.2 REMARK 200 DATA REDUNDANCY : 3.200 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08100 REMARK 200 FOR THE DATA SET : 10.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 3.42 REMARK 200 COMPLETENESS FOR SHELL (%) : 71.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.20 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.16500 REMARK 200 FOR SHELL : 4.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: 4TNA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 78.73 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 5.12 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM MES-KOH PH 5.6, 1.6 TO 1.8 M REMARK 280 LI2SO4, 10 MM MGCL2, PH 5.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 1 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -Y,-X,-Z+1/3 REMARK 290 5555 -X+Y,Y,-Z+2/3 REMARK 290 6555 X,X-Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 55.07333 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 27.53667 REMARK 290 SMTRY1 4 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 27.53667 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 55.07333 REMARK 290 SMTRY1 6 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O4' U A 8 O2' 5MC A 48 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 G A 1 P G A 1 OP3 -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 A A 9 N9 - C1' - C2' ANGL. DEV. = 8.1 DEGREES REMARK 500 C A 17 N1 - C1' - C2' ANGL. DEV. = 9.6 DEGREES REMARK 500 G A 19 O4' - C1' - N9 ANGL. DEV. = 5.0 DEGREES REMARK 500 U A 60 C2' - C3' - O3' ANGL. DEV. = 17.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 G A 5 0.05 SIDE CHAIN REMARK 500 G A 42 0.05 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 202 DBREF 1FIR A 1 76 PDB 1FIR 1FIR 1 76 SEQRES 1 A 76 G C C C G 2MG A U A 2MG C U C SEQRES 2 A 76 A G H2U C G G H2U A G A G C A SEQRES 3 A 76 PSU C A G A C U 70U U U 12A A PSU SEQRES 4 A 76 C U G A G G 7MG H2U 5MC 5MC A G G SEQRES 5 A 76 G 2MU PSU C A 1MA G U C C C U G SEQRES 6 A 76 U U C G G G C G C C A MODRES 1FIR 2MG A 6 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1FIR 2MG A 10 G 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE MODRES 1FIR H2U A 16 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1FIR H2U A 20 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1FIR PSU A 27 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 70U A 34 U MODRES 1FIR 12A A 37 A MODRES 1FIR PSU A 39 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 7MG A 46 G MODRES 1FIR H2U A 47 U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 5MC A 48 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1FIR 5MC A 49 C 5-METHYLCYTIDINE-5'-MONOPHOSPHATE MODRES 1FIR 2MU A 54 U 2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE MODRES 1FIR PSU A 55 U PSEUDOURIDINE-5'-MONOPHOSPHATE MODRES 1FIR 1MA A 58 A HET 2MG A 6 24 HET 2MG A 10 24 HET H2U A 16 20 HET H2U A 20 40 HET PSU A 27 20 HET 70U A 34 25 HET 12A A 37 34 HET PSU A 39 20 HET 7MG A 46 24 HET H2U A 47 20 HET 5MC A 48 21 HET 5MC A 49 21 HET 2MU A 54 22 HET PSU A 55 20 HET 1MA A 58 23 HET MG A 201 1 HET NA A 202 1 HETNAM 2MG 2N-METHYLGUANOSINE-5'-MONOPHOSPHATE HETNAM H2U 5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE HETNAM PSU PSEUDOURIDINE-5'-MONOPHOSPHATE HETNAM 70U 5-(O-METHYLACETO)-2-THIO-2-DEOXY-URIDINE-5'- HETNAM 2 70U MONOPHOSPHATE HETNAM 12A 2-METHYLTHIO-N6-(AMINOCARBONYL-L-THREONYL)-ADENOSINE- HETNAM 2 12A 5'-MONOPHOSPHATE HETNAM 7MG 7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE HETNAM 5MC 5-METHYLCYTIDINE-5'-MONOPHOSPHATE HETNAM 2MU 2',5-DIMETHYLURIDINE-5'-MONOPHOSPHATE HETNAM 1MA 6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE HETNAM MG MAGNESIUM ION HETNAM NA SODIUM ION FORMUL 1 2MG 2(C11 H16 N5 O8 P) FORMUL 1 H2U 3(C9 H15 N2 O9 P) FORMUL 1 PSU 3(C9 H13 N2 O9 P) FORMUL 1 70U C12 H17 N2 O10 P S FORMUL 1 12A C16 H23 N6 O11 P S FORMUL 1 7MG C11 H18 N5 O8 P FORMUL 1 5MC 2(C10 H16 N3 O8 P) FORMUL 1 2MU C11 H17 N2 O9 P FORMUL 1 1MA C11 H16 N5 O7 P FORMUL 2 MG MG 2+ FORMUL 3 NA NA 1+ FORMUL 4 HOH *16(H2 O) LINK O3' G A 5 P 2MG A 6 1555 1555 1.62 LINK O3' 2MG A 6 P A A 7 1555 1555 1.60 LINK O3' A A 9 P 2MG A 10 1555 1555 1.59 LINK O3' 2MG A 10 P C A 11 1555 1555 1.60 LINK O3' G A 15 P H2U A 16 1555 1555 1.60 LINK O3' H2U A 16 P C A 17 1555 1555 1.61 LINK O3'A G A 19 P AH2U A 20 1555 1555 1.59 LINK O3'B G A 19 P BH2U A 20 1555 1555 1.59 LINK O3'AH2U A 20 P A A 21 1555 1555 1.61 LINK O3'BH2U A 20 P A A 21 1555 1555 1.62 LINK O3' A A 26 P PSU A 27 1555 1555 1.60 LINK O3' PSU A 27 P C A 28 1555 1555 1.61 LINK O3' U A 33 P 70U A 34 1555 1555 1.60 LINK O3' 70U A 34 P U A 35 1555 1555 1.60 LINK O3' U A 36 P 12A A 37 1555 1555 1.60 LINK O3' 12A A 37 P A A 38 1555 1555 1.60 LINK O3' A A 38 P PSU A 39 1555 1555 1.60 LINK O3' PSU A 39 P C A 40 1555 1555 1.61 LINK O3' G A 45 P 7MG A 46 1555 1555 1.60 LINK O3' 7MG A 46 P H2U A 47 1555 1555 1.59 LINK O3' H2U A 47 P 5MC A 48 1555 1555 1.59 LINK O3' 5MC A 48 P 5MC A 49 1555 1555 1.60 LINK O3' 5MC A 49 P A A 50 1555 1555 1.58 LINK O3' G A 53 P 2MU A 54 1555 1555 1.60 LINK O3' 2MU A 54 P PSU A 55 1555 1555 1.59 LINK O3' PSU A 55 P C A 56 1555 1555 1.60 LINK O3' A A 57 P 1MA A 58 1555 1555 1.61 LINK O3' 1MA A 58 P G A 59 1555 1555 1.59 SITE 1 AC1 1 G A 42 CRYST1 100.720 100.720 82.610 90.00 90.00 120.00 P 32 1 2 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009929 0.005732 0.000000 0.00000 SCALE2 0.000000 0.011464 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012105 0.00000 CONECT 93 108 CONECT 108 93 109 110 111 CONECT 109 108 CONECT 110 108 CONECT 111 108 112 CONECT 112 111 113 CONECT 113 112 114 115 CONECT 114 113 119 CONECT 115 113 116 117 CONECT 116 115 132 CONECT 117 115 118 119 CONECT 118 117 CONECT 119 114 117 120 CONECT 120 119 121 131 CONECT 121 120 122 CONECT 122 121 123 CONECT 123 122 124 131 CONECT 124 123 125 126 CONECT 125 124 CONECT 126 124 127 CONECT 127 126 128 130 CONECT 128 127 129 CONECT 129 128 CONECT 130 127 131 CONECT 131 120 123 130 CONECT 132 116 CONECT 182 196 CONECT 196 182 197 198 199 CONECT 197 196 CONECT 198 196 CONECT 199 196 200 CONECT 200 199 201 CONECT 201 200 202 203 CONECT 202 201 207 CONECT 203 201 204 205 CONECT 204 203 220 CONECT 205 203 206 207 CONECT 206 205 CONECT 207 202 205 208 CONECT 208 207 209 219 CONECT 209 208 210 CONECT 210 209 211 CONECT 211 210 212 219 CONECT 212 211 213 214 CONECT 213 212 CONECT 214 212 215 CONECT 215 214 216 218 CONECT 216 215 217 CONECT 217 216 CONECT 218 215 219 CONECT 219 208 211 218 CONECT 220 204 CONECT 310 325 CONECT 325 310 326 327 328 CONECT 326 325 CONECT 327 325 CONECT 328 325 329 CONECT 329 328 330 CONECT 330 329 331 332 CONECT 331 330 334 CONECT 332 330 333 335 CONECT 333 332 345 CONECT 334 331 335 337 CONECT 335 332 334 336 CONECT 336 335 CONECT 337 334 338 344 CONECT 338 337 339 340 CONECT 339 338 CONECT 340 338 341 CONECT 341 340 342 343 CONECT 342 341 CONECT 343 341 344 CONECT 344 337 343 CONECT 345 333 CONECT 404 434 CONECT 405 435 CONECT 434 404 436 438 440 CONECT 435 405 437 439 441 CONECT 436 434 CONECT 437 435 CONECT 438 434 CONECT 439 435 CONECT 440 434 442 CONECT 441 435 443 CONECT 442 440 444 CONECT 443 441 445 CONECT 444 442 446 448 CONECT 445 443 447 449 CONECT 446 444 452 CONECT 447 445 453 CONECT 448 444 450 454 CONECT 449 445 451 455 CONECT 450 448 474 CONECT 451 449 474 CONECT 452 446 454 458 CONECT 453 447 455 459 CONECT 454 448 452 456 CONECT 455 449 453 457 CONECT 456 454 CONECT 457 455 CONECT 458 452 460 472 CONECT 459 453 461 473 CONECT 460 458 462 464 CONECT 461 459 463 465 CONECT 462 460 CONECT 463 461 CONECT 464 460 466 CONECT 465 461 467 CONECT 466 464 468 470 CONECT 467 465 469 471 CONECT 468 466 CONECT 469 467 CONECT 470 466 472 CONECT 471 467 473 CONECT 472 458 470 CONECT 473 459 471 CONECT 474 450 451 CONECT 592 623 CONECT 606 607 611 CONECT 607 606 608 612 CONECT 608 607 609 CONECT 609 608 610 613 CONECT 610 609 611 614 CONECT 611 606 610 CONECT 612 607 CONECT 613 609 CONECT 614 610 615 620 CONECT 615 614 616 617 CONECT 616 615 CONECT 617 615 618 619 CONECT 618 617 620 621 CONECT 619 617 626 CONECT 620 614 618 CONECT 621 618 622 CONECT 622 621 623 CONECT 623 592 622 624 625 CONECT 624 623 CONECT 625 623 CONECT 626 619 CONECT 741 775 CONECT 753 754 760 766 CONECT 754 753 755 756 CONECT 755 754 CONECT 756 754 757 CONECT 757 756 758 759 CONECT 758 757 CONECT 759 757 760 761 CONECT 760 753 759 CONECT 761 759 762 CONECT 762 761 763 764 CONECT 763 762 CONECT 764 762 765 CONECT 765 764 CONECT 766 753 768 772 CONECT 767 768 CONECT 768 766 767 770 CONECT 769 770 778 CONECT 770 768 769 771 CONECT 771 770 772 773 CONECT 772 766 771 CONECT 773 771 774 CONECT 774 773 775 CONECT 775 741 774 776 777 CONECT 776 775 CONECT 777 775 CONECT 778 769 CONECT 806 818 CONECT 818 806 819 820 821 CONECT 819 818 CONECT 820 818 CONECT 821 818 822 CONECT 822 821 823 CONECT 823 822 824 825 CONECT 824 823 829 CONECT 825 823 826 827 CONECT 826 825 852 CONECT 827 825 828 829 CONECT 828 827 CONECT 829 824 827 830 CONECT 830 829 831 839 CONECT 831 830 832 CONECT 832 831 833 CONECT 833 832 834 839 CONECT 834 833 835 836 CONECT 835 834 842 CONECT 836 834 837 CONECT 837 836 838 840 CONECT 838 837 839 CONECT 839 830 833 838 CONECT 840 837 841 CONECT 841 840 CONECT 842 835 843 844 CONECT 843 842 CONECT 844 842 845 CONECT 845 844 846 849 CONECT 846 845 847 848 CONECT 847 846 CONECT 848 846 CONECT 849 845 850 851 CONECT 850 849 CONECT 851 849 CONECT 852 826 CONECT 860 891 CONECT 874 875 879 CONECT 875 874 876 880 CONECT 876 875 877 CONECT 877 876 878 881 CONECT 878 877 879 882 CONECT 879 874 878 CONECT 880 875 CONECT 881 877 CONECT 882 878 883 888 CONECT 883 882 884 885 CONECT 884 883 CONECT 885 883 886 887 CONECT 886 885 888 889 CONECT 887 885 894 CONECT 888 882 886 CONECT 889 886 890 CONECT 890 889 891 CONECT 891 860 890 892 893 CONECT 892 891 CONECT 893 891 CONECT 894 887 CONECT 1010 1025 CONECT 1025 1010 1026 1027 1028 CONECT 1026 1025 CONECT 1027 1025 CONECT 1028 1025 1029 CONECT 1029 1028 1030 CONECT 1030 1029 1031 1032 CONECT 1031 1030 1036 CONECT 1032 1030 1033 1034 CONECT 1033 1032 1049 CONECT 1034 1032 1035 1036 CONECT 1035 1034 CONECT 1036 1031 1034 1037 CONECT 1037 1036 1038 1047 CONECT 1038 1037 1039 CONECT 1039 1038 1040 1048 CONECT 1040 1039 1041 1047 CONECT 1041 1040 1042 1043 CONECT 1042 1041 CONECT 1043 1041 1044 CONECT 1044 1043 1045 1046 CONECT 1045 1044 CONECT 1046 1044 1047 CONECT 1047 1037 1040 1046 CONECT 1048 1039 CONECT 1049 1033 1050 1051 1052 CONECT 1050 1049 CONECT 1051 1049 CONECT 1052 1049 1053 CONECT 1053 1052 1054 CONECT 1054 1053 1055 1056 CONECT 1055 1054 1058 CONECT 1056 1054 1057 1059 CONECT 1057 1056 1069 CONECT 1058 1055 1059 1061 CONECT 1059 1056 1058 1060 CONECT 1060 1059 CONECT 1061 1058 1062 1068 CONECT 1062 1061 1063 1064 CONECT 1063 1062 CONECT 1064 1062 1065 CONECT 1065 1064 1066 1067 CONECT 1066 1065 CONECT 1067 1065 1068 CONECT 1068 1061 1067 CONECT 1069 1057 1070 1071 1072 CONECT 1070 1069 CONECT 1071 1069 CONECT 1072 1069 1073 CONECT 1073 1072 1074 CONECT 1074 1073 1075 1076 CONECT 1075 1074 1080 CONECT 1076 1074 1077 1078 CONECT 1077 1076 1090 CONECT 1078 1076 1079 1080 CONECT 1079 1078 CONECT 1080 1075 1078 1081 CONECT 1081 1080 1082 1088 CONECT 1082 1081 1083 1084 CONECT 1083 1082 CONECT 1084 1082 1085 CONECT 1085 1084 1086 1087 CONECT 1086 1085 CONECT 1087 1085 1088 1089 CONECT 1088 1081 1087 CONECT 1089 1087 CONECT 1090 1077 1091 1092 1093 CONECT 1091 1090 CONECT 1092 1090 CONECT 1093 1090 1094 CONECT 1094 1093 1095 CONECT 1095 1094 1096 1097 CONECT 1096 1095 1101 CONECT 1097 1095 1098 1099 CONECT 1098 1097 1111 CONECT 1099 1097 1100 1101 CONECT 1100 1099 CONECT 1101 1096 1099 1102 CONECT 1102 1101 1103 1109 CONECT 1103 1102 1104 1105 CONECT 1104 1103 CONECT 1105 1103 1106 CONECT 1106 1105 1107 1108 CONECT 1107 1106 CONECT 1108 1106 1109 1110 CONECT 1109 1102 1108 CONECT 1110 1108 CONECT 1111 1098 CONECT 1187 1221 CONECT 1202 1203 1208 1211 CONECT 1203 1202 1204 1209 CONECT 1204 1203 1205 CONECT 1205 1204 1206 1210 CONECT 1206 1205 1207 1208 CONECT 1207 1206 CONECT 1208 1202 1206 CONECT 1209 1203 CONECT 1210 1205 CONECT 1211 1202 1212 1217 CONECT 1212 1211 1213 1214 CONECT 1213 1212 1220 CONECT 1214 1212 1215 1216 CONECT 1215 1214 1217 1218 CONECT 1216 1214 1241 CONECT 1217 1211 1215 CONECT 1218 1215 1219 CONECT 1219 1218 1221 CONECT 1220 1213 CONECT 1221 1187 1219 1222 1223 CONECT 1222 1221 CONECT 1223 1221 CONECT 1224 1225 1229 CONECT 1225 1224 1226 1230 CONECT 1226 1225 1227 CONECT 1227 1226 1228 1231 CONECT 1228 1227 1229 1232 CONECT 1229 1224 1228 CONECT 1230 1225 CONECT 1231 1227 CONECT 1232 1228 1233 1238 CONECT 1233 1232 1234 1235 CONECT 1234 1233 CONECT 1235 1233 1236 1237 CONECT 1236 1235 1238 1239 CONECT 1237 1235 1244 CONECT 1238 1232 1236 CONECT 1239 1236 1240 CONECT 1240 1239 1241 CONECT 1241 1216 1240 1242 1243 CONECT 1242 1241 CONECT 1243 1241 CONECT 1244 1237 CONECT 1272 1286 CONECT 1286 1272 1287 1288 1289 CONECT 1287 1286 CONECT 1288 1286 CONECT 1289 1286 1290 CONECT 1290 1289 1291 CONECT 1291 1290 1292 1293 CONECT 1292 1291 1297 CONECT 1293 1291 1294 1295 CONECT 1294 1293 1309 CONECT 1295 1293 1296 1297 CONECT 1296 1295 CONECT 1297 1292 1295 1298 CONECT 1298 1297 1299 1308 CONECT 1299 1298 1300 CONECT 1300 1299 1301 CONECT 1301 1300 1302 1308 CONECT 1302 1301 1303 1304 CONECT 1303 1302 CONECT 1304 1302 1305 1306 CONECT 1305 1304 CONECT 1306 1304 1307 CONECT 1307 1306 1308 CONECT 1308 1298 1301 1307 CONECT 1309 1294 MASTER 310 0 17 0 0 0 1 6 1663 1 381 6 END