HEADER ENDOCYTOSIS/EXOCYTOSIS 09-AUG-00 1FKM TITLE CRYSTAL STRUCTURE OF THE YPT/RAB-GAP DOMAIN OF GYP1P COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (GYP1P); COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: YPT/RAB-GAP DOMAIN, RESIDUES 248-637; COMPND 5 SYNONYM: ORF YOR070C; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21(DE3); SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21/DE3; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET19; SOURCE 9 OTHER_DETAILS: GENOMIC DNA KEYWDS GAP, YPT/RAB PROTEIN, VESICULAR TRAFFICKING, ENDOCYTOSIS, HYDROLASE, KEYWDS 2 GTPASE ACTIVATION, ENDOCYTOSIS-EXOCYTOSIS COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR A.RAK,R.FEDOROV,K.ALEXANDROV,S.ALBERT,R.S.GOODY,D.GALLWITZ, AUTHOR 2 A.J.SCHEIDIG REVDAT 6 06-NOV-24 1FKM 1 REMARK REVDAT 5 21-DEC-22 1FKM 1 REMARK SEQADV LINK REVDAT 4 31-JAN-18 1FKM 1 REMARK REVDAT 3 04-OCT-17 1FKM 1 REMARK REVDAT 2 24-FEB-09 1FKM 1 VERSN REVDAT 1 09-FEB-01 1FKM 0 JRNL AUTH A.RAK,R.FEDOROV,K.ALEXANDROV,S.ALBERT,R.S.GOODY,D.GALLWITZ, JRNL AUTH 2 A.J.SCHEIDIG JRNL TITL CRYSTAL STRUCTURE OF THE GAP DOMAIN OF GYP1P: FIRST INSIGHTS JRNL TITL 2 INTO INTERACTION WITH YPT/RAB PROTEINS. JRNL REF EMBO J. V. 19 5105 2000 JRNL REFN ISSN 0261-4189 JRNL PMID 11013213 JRNL DOI 10.1093/EMBOJ/19.19.5105 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH S.ALBERT,E.WILL,D.GALLWITZ REMARK 1 TITL IDENTIFICATION OF THE CATALYTIC DOMAINS AND THEIR REMARK 1 TITL 2 FUNCTIONALLY CRITICAL ARGININE RESIDUES OF TWO YEAST REMARK 1 TITL 3 GTPASE-ACTIVATING PROTEINS SPECIFIC FOR YPT/RAB TRANSPORT REMARK 1 TITL 4 GTPASES REMARK 1 REF EMBO J. V. 18 5216 1999 REMARK 1 REFN ISSN 0261-4189 REMARK 1 DOI 10.1093/EMBOJ/18.19.5216 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 6.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 852619.120 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 94.7 REMARK 3 NUMBER OF REFLECTIONS : 33502 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.199 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3354 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.01 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.10 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 5000 REMARK 3 BIN R VALUE (WORKING SET) : 0.2230 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.40 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 578 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2718 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 166 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 19.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.65000 REMARK 3 B22 (A**2) : 2.65000 REMARK 3 B33 (A**2) : -5.30000 REMARK 3 B12 (A**2) : 2.38000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.21 REMARK 3 ESD FROM SIGMAA (A) : 0.12 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.14 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.005 REMARK 3 BOND ANGLES (DEGREES) : 1.100 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 18.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.730 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 2.096 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 4.280 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 3.282 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 6.864 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.61 REMARK 3 BSOL : 82.45 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 FOR THE FIRST CRYSTAL, EMBL/DESY, HAMBURG, BEAMLINE BW6 (MAD REMARK 3 EXPERIMENT): REMARK 3 SE L1 (0.9790 A) DMIN = 20.0-2.35 NO. OF REFLECTIONS = 461421 REMARK 3 NO. OF UNIQUE REFLECTIONS = 36326 COMPLETENESS = 99.2 REMARK 3 I/SIGMA (%) = 27.5 RSYM = 6.8; REMARK 3 SE L2 (0.9795 A) DMIN = 20.0-2.35 NO. OF REFLECTIONS = 458264 REMARK 3 NO. OF UNIQUE REFLECTIONS = 36412 COMPLETENESS = REMARK 3 99.3 I/SIGMA (%) = 27.0 RSYM = 7.1' REMARK 3 SE L3 (0.9200 A) DMIN = 20.0-2.7 NO. OF REFLECTIONS = REMARK 3 275885 NO. OF UNIQUE REFLECTIONS = 23838 COMPLETENESS REMARK 3 = 98.4 I/SIGMA (%) = 38.8 RSYM = 5.5 REMARK 3 OBSERVED DIFFRACTION RATIOS : REMARK 3 REMARK 3 L1 X L1 = 0.0677 L1 X L2 = 0.0360 L1 X L3 = 0.0470 REMARK 3 L2 X L2 = 0.0558 L2 X L3 = 0.0520 REMARK 3 L3 X L3 =0.0466 REMARK 3 REMARK 3 FOR THE SECOND CRYSTAL, EMBL/DESY, HAMBURG, BEAMLINE BW7A (HIGH- REMARK 3 RESOLUTION DATA SET): REMARK 3 SE L4 (0.8428 A) DMIN = 6.0-1.9 NO. OF REFLECTIONS = 237598 REMARK 3 NO. OF UNIQUE REFLECTIONS = 33502 COMPLETENESS = REMARK 3 91.2 I/SIGMA (%) = 14.4 RSYM = 9.4 (24.2) REMARK 4 REMARK 4 1FKM COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011669. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 13-DEC-99; 24-JAN-00 REMARK 200 TEMPERATURE (KELVIN) : 100; 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y; Y REMARK 200 RADIATION SOURCE : MPG/DESY, HAMBURG; EMBL/DESY, REMARK 200 HAMBURG REMARK 200 BEAMLINE : BW6; BW7A REMARK 200 X-RAY GENERATOR MODEL : NULL; NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M; NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9790, 0.9795, 0.9200; 0.8428 REMARK 200 MONOCHROMATOR : NULL; NULL REMARK 200 OPTICS : NULL; NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD; IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH; MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MAR REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 33503 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 91.2 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : 0.09400 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 14.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.1 REMARK 200 DATA REDUNDANCY IN SHELL : 4.60 REMARK 200 R MERGE FOR SHELL (I) : 0.24200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD; NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG MME 5000, PH 7.5, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 18K, TEMPERATURE 291.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 185.16867 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 92.58433 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.87650 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 46.29217 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 231.46083 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 185.16867 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 92.58433 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 46.29217 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 138.87650 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 231.46083 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A1208 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 248 REMARK 465 GLN A 510 REMARK 465 GLU A 511 REMARK 465 VAL A 512 REMARK 465 THR A 513 REMARK 465 SER A 514 REMARK 465 SER A 515 REMARK 465 TYR A 516 REMARK 465 SER A 517 REMARK 465 MSE A 518 REMARK 465 SER A 519 REMARK 465 SER A 520 REMARK 465 ASN A 521 REMARK 465 ASP A 522 REMARK 465 ILE A 523 REMARK 465 LYS A 524 REMARK 465 PRO A 525 REMARK 465 PRO A 526 REMARK 465 VAL A 527 REMARK 465 THR A 528 REMARK 465 PRO A 529 REMARK 465 THR A 530 REMARK 465 GLU A 531 REMARK 465 PRO A 532 REMARK 465 ARG A 533 REMARK 465 VAL A 534 REMARK 465 ALA A 535 REMARK 465 SER A 536 REMARK 465 PHE A 537 REMARK 465 VAL A 538 REMARK 465 THR A 539 REMARK 465 PRO A 540 REMARK 465 THR A 541 REMARK 465 LYS A 542 REMARK 465 ASP A 543 REMARK 465 PHE A 544 REMARK 465 GLN A 545 REMARK 465 SER A 546 REMARK 465 PRO A 547 REMARK 465 THR A 548 REMARK 465 THR A 549 REMARK 465 ALA A 550 REMARK 465 LEU A 551 REMARK 465 SER A 552 REMARK 465 ASN A 553 REMARK 465 MSE A 554 REMARK 465 THR A 555 REMARK 465 PRO A 556 REMARK 465 ASN A 557 REMARK 465 ASN A 558 REMARK 465 ALA A 559 REMARK 465 VAL A 560 REMARK 465 GLU A 561 REMARK 465 ASP A 562 REMARK 465 SER A 563 REMARK 465 GLY A 564 REMARK 465 LYS A 565 REMARK 465 MSE A 566 REMARK 465 ARG A 567 REMARK 465 GLN A 568 REMARK 465 SER A 569 REMARK 465 ASP A 631 REMARK 465 ALA A 632 REMARK 465 THR A 633 REMARK 465 SER A 634 REMARK 465 HIS A 635 REMARK 465 TRP A 636 REMARK 465 LEU A 637 REMARK 465 HIS A 638 REMARK 465 HIS A 639 REMARK 465 HIS A 640 REMARK 465 HIS A 641 REMARK 465 HIS A 642 REMARK 465 HIS A 643 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 1142 O HOH A 1188 1.98 REMARK 500 O HOH A 1142 O HOH A 1200 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 266 -68.86 69.44 REMARK 500 TYR A 296 -64.29 -94.16 REMARK 500 SER A 324 45.53 35.31 REMARK 500 ASP A 325 -57.31 -121.43 REMARK 500 ARG A 329 22.86 -68.55 REMARK 500 ASP A 330 -70.82 -50.71 REMARK 500 GLN A 444 55.28 37.38 REMARK 500 ASN A 604 54.81 -148.40 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1EK0 RELATED DB: PDB REMARK 900 GPPNHP-BOUND YPT51 DBREF 1FKM A 249 637 UNP Q08484 GYP1_YEAST 249 637 SEQADV 1FKM MSE A 248 UNP Q08484 INITIATING METHIONINE SEQADV 1FKM MSE A 413 UNP Q08484 MET 413 MODIFIED RESIDUE SEQADV 1FKM MSE A 484 UNP Q08484 MET 484 MODIFIED RESIDUE SEQADV 1FKM MSE A 489 UNP Q08484 MET 489 MODIFIED RESIDUE SEQADV 1FKM MSE A 494 UNP Q08484 MET 494 MODIFIED RESIDUE SEQADV 1FKM MSE A 500 UNP Q08484 MET 500 MODIFIED RESIDUE SEQADV 1FKM MSE A 518 UNP Q08484 MET 518 MODIFIED RESIDUE SEQADV 1FKM MSE A 554 UNP Q08484 MET 554 MODIFIED RESIDUE SEQADV 1FKM MSE A 566 UNP Q08484 MET 566 MODIFIED RESIDUE SEQADV 1FKM MSE A 591 UNP Q08484 MET 591 MODIFIED RESIDUE SEQADV 1FKM MSE A 593 UNP Q08484 MET 593 MODIFIED RESIDUE SEQADV 1FKM MSE A 617 UNP Q08484 MET 617 MODIFIED RESIDUE SEQADV 1FKM HIS A 638 UNP Q08484 EXPRESSION TAG SEQADV 1FKM HIS A 639 UNP Q08484 EXPRESSION TAG SEQADV 1FKM HIS A 640 UNP Q08484 EXPRESSION TAG SEQADV 1FKM HIS A 641 UNP Q08484 EXPRESSION TAG SEQADV 1FKM HIS A 642 UNP Q08484 EXPRESSION TAG SEQADV 1FKM HIS A 643 UNP Q08484 EXPRESSION TAG SEQRES 1 A 396 MSE ASN SER ILE ILE GLN ARG ILE SER LYS PHE ASP ASN SEQRES 2 A 396 ILE LEU LYS ASP LYS THR ILE ILE ASN GLN GLN ASP LEU SEQRES 3 A 396 ARG GLN ILE SER TRP ASN GLY ILE PRO LYS ILE HIS ARG SEQRES 4 A 396 PRO VAL VAL TRP LYS LEU LEU ILE GLY TYR LEU PRO VAL SEQRES 5 A 396 ASN THR LYS ARG GLN GLU GLY PHE LEU GLN ARG LYS ARG SEQRES 6 A 396 LYS GLU TYR ARG ASP SER LEU LYS HIS THR PHE SER ASP SEQRES 7 A 396 GLN HIS SER ARG ASP ILE PRO THR TRP HIS GLN ILE GLU SEQRES 8 A 396 ILE ASP ILE PRO ARG THR ASN PRO HIS ILE PRO LEU TYR SEQRES 9 A 396 GLN PHE LYS SER VAL GLN ASN SER LEU GLN ARG ILE LEU SEQRES 10 A 396 TYR LEU TRP ALA ILE ARG HIS PRO ALA SER GLY TYR VAL SEQRES 11 A 396 GLN GLY ILE ASN ASP LEU VAL THR PRO PHE PHE GLU THR SEQRES 12 A 396 PHE LEU THR GLU TYR LEU PRO PRO SER GLN ILE ASP ASP SEQRES 13 A 396 VAL GLU ILE LYS ASP PRO SER THR TYR MSE VAL ASP GLU SEQRES 14 A 396 GLN ILE THR ASP LEU GLU ALA ASP THR PHE TRP CYS LEU SEQRES 15 A 396 THR LYS LEU LEU GLU GLN ILE THR ASP ASN TYR ILE HIS SEQRES 16 A 396 GLY GLN PRO GLY ILE LEU ARG GLN VAL LYS ASN LEU SER SEQRES 17 A 396 GLN LEU VAL LYS ARG ILE ASP ALA ASP LEU TYR ASN HIS SEQRES 18 A 396 PHE GLN ASN GLU HIS VAL GLU PHE ILE GLN PHE ALA PHE SEQRES 19 A 396 ARG TRP MSE ASN CYS LEU LEU MSE ARG GLU PHE GLN MSE SEQRES 20 A 396 GLY THR VAL ILE ARG MSE TRP ASP THR TYR LEU SER GLU SEQRES 21 A 396 THR SER GLN GLU VAL THR SER SER TYR SER MSE SER SER SEQRES 22 A 396 ASN ASP ILE LYS PRO PRO VAL THR PRO THR GLU PRO ARG SEQRES 23 A 396 VAL ALA SER PHE VAL THR PRO THR LYS ASP PHE GLN SER SEQRES 24 A 396 PRO THR THR ALA LEU SER ASN MSE THR PRO ASN ASN ALA SEQRES 25 A 396 VAL GLU ASP SER GLY LYS MSE ARG GLN SER SER LEU ASN SEQRES 26 A 396 GLU PHE HIS VAL PHE VAL CYS ALA ALA PHE LEU ILE LYS SEQRES 27 A 396 TRP SER ASP GLN LEU MSE GLU MSE ASP PHE GLN GLU THR SEQRES 28 A 396 ILE THR PHE LEU GLN ASN PRO PRO THR LYS ASP TRP THR SEQRES 29 A 396 GLU THR ASP ILE GLU MSE LEU LEU SER GLU ALA PHE ILE SEQRES 30 A 396 TRP GLN SER LEU TYR LYS ASP ALA THR SER HIS TRP LEU SEQRES 31 A 396 HIS HIS HIS HIS HIS HIS MODRES 1FKM MSE A 413 MET SELENOMETHIONINE MODRES 1FKM MSE A 484 MET SELENOMETHIONINE MODRES 1FKM MSE A 489 MET SELENOMETHIONINE MODRES 1FKM MSE A 494 MET SELENOMETHIONINE MODRES 1FKM MSE A 500 MET SELENOMETHIONINE MODRES 1FKM MSE A 591 MET SELENOMETHIONINE MODRES 1FKM MSE A 593 MET SELENOMETHIONINE MODRES 1FKM MSE A 617 MET SELENOMETHIONINE HET MSE A 413 8 HET MSE A 484 8 HET MSE A 489 8 HET MSE A 494 8 HET MSE A 500 8 HET MSE A 591 8 HET MSE A 593 8 HET MSE A 617 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 8(C5 H11 N O2 SE) FORMUL 2 HOH *166(H2 O) HELIX 1 1 SER A 250 LYS A 263 1 14 HELIX 2 2 ASN A 269 TRP A 278 1 10 HELIX 3 3 PRO A 282 ILE A 284 5 3 HELIX 4 4 HIS A 285 ILE A 294 1 10 HELIX 5 5 ARG A 303 THR A 322 1 20 HELIX 6 6 ARG A 329 ILE A 341 1 13 HELIX 7 7 PRO A 342 THR A 344 5 3 HELIX 8 8 ILE A 348 GLN A 352 5 5 HELIX 9 9 PHE A 353 HIS A 371 1 19 HELIX 10 10 GLY A 379 THR A 393 1 15 HELIX 11 11 GLU A 394 LEU A 396 5 3 HELIX 12 12 PRO A 397 VAL A 404 5 8 HELIX 13 13 ASP A 408 TYR A 412 5 5 HELIX 14 14 VAL A 414 GLU A 434 1 21 HELIX 15 15 GLN A 435 TYR A 440 5 6 HELIX 16 16 GLN A 444 ASP A 462 1 19 HELIX 17 17 ASP A 462 GLU A 472 1 11 HELIX 18 18 PHE A 476 CYS A 486 1 11 HELIX 19 19 LEU A 488 PHE A 492 5 5 HELIX 20 20 GLN A 493 SER A 509 1 17 HELIX 21 21 SER A 570 TRP A 586 1 17 HELIX 22 22 TRP A 586 MSE A 591 1 6 HELIX 23 23 ASP A 594 GLN A 603 1 10 HELIX 24 24 THR A 611 LYS A 630 1 20 LINK C TYR A 412 N MSE A 413 1555 1555 1.33 LINK C MSE A 413 N VAL A 414 1555 1555 1.33 LINK C TRP A 483 N MSE A 484 1555 1555 1.33 LINK C MSE A 484 N ASN A 485 1555 1555 1.33 LINK C LEU A 488 N MSE A 489 1555 1555 1.33 LINK C MSE A 489 N ARG A 490 1555 1555 1.33 LINK C GLN A 493 N MSE A 494 1555 1555 1.33 LINK C MSE A 494 N GLY A 495 1555 1555 1.33 LINK C ARG A 499 N MSE A 500 1555 1555 1.33 LINK C MSE A 500 N TRP A 501 1555 1555 1.33 LINK C LEU A 590 N MSE A 591 1555 1555 1.33 LINK C MSE A 591 N GLU A 592 1555 1555 1.33 LINK C GLU A 592 N MSE A 593 1555 1555 1.33 LINK C MSE A 593 N ASP A 594 1555 1555 1.33 LINK C GLU A 616 N MSE A 617 1555 1555 1.33 LINK C MSE A 617 N LEU A 618 1555 1555 1.33 CRYST1 74.060 74.060 277.753 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013503 0.007796 0.000000 0.00000 SCALE2 0.000000 0.015591 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003600 0.00000