HEADER HYDROLASE/HYDROLASE INHIBITOR 09-AUG-00 1FKN TITLE STRUCTURE OF BETA-SECRETASE COMPLEXED WITH INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: MEMAPSIN 2; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: PROTEASE DOMAIN; COMPND 5 SYNONYM: BETA-SECRETASE; COMPND 6 EC: 3.4.23.46; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: INHIBITOR; COMPND 10 CHAIN: C, D; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET11A; SOURCE 9 MOL_ID: 2; SOURCE 10 SYNTHETIC: YES KEYWDS ALZHEIMER'S DISEASE, BETA-SECRETASE, MEMAPSIN 2, BASE, ASPARTIC KEYWDS 2 PROTEASE, HYDROLASE-HYDROLASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR L.HONG,G.KOELSCH,X.LIN,S.WU,S.TERZYAN,A.GHOSH,X.C.ZHANG,J.TANG REVDAT 7 15-NOV-23 1FKN 1 LINK ATOM REVDAT 6 13-JUL-11 1FKN 1 VERSN REVDAT 5 05-MAY-09 1FKN 1 ATOM HETATM SEQRES DBREF REVDAT 5 2 1 COMPND REMARK REVDAT 4 24-FEB-09 1FKN 1 VERSN REVDAT 3 31-DEC-02 1FKN 1 REMARK REVDAT 2 01-NOV-00 1FKN 1 REMARK DBREF REVDAT 1 09-OCT-00 1FKN 0 JRNL AUTH L.HONG,G.KOELSCH,X.LIN,S.WU,S.TERZYAN,A.K.GHOSH,X.C.ZHANG, JRNL AUTH 2 J.TANG JRNL TITL STRUCTURE OF THE PROTEASE DOMAIN OF MEMAPSIN 2 JRNL TITL 2 (BETA-SECRETASE) COMPLEXED WITH INHIBITOR. JRNL REF SCIENCE V. 290 150 2000 JRNL REFN ISSN 0036-8075 JRNL PMID 11021803 JRNL DOI 10.1126/SCIENCE.290.5489.150 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.90 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 340489.220 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 90.0 REMARK 3 NUMBER OF REFLECTIONS : 69056 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.180 REMARK 3 FREE R VALUE : 0.224 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.100 REMARK 3 FREE R VALUE TEST SET COUNT : 6748 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.003 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.02 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 59.80 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 6833 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE : 0.2740 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.10 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 771 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6254 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 529 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.00 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 12.96000 REMARK 3 B22 (A**2) : -8.93000 REMARK 3 B33 (A**2) : -4.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 7.73000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.19 REMARK 3 ESD FROM SIGMAA (A) : 0.17 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.24 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.19 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 1.800 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.10 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.120 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.43 REMARK 3 BSOL : 68.74 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : OM99.PARAM REMARK 3 PARAMETER FILE 3 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : OM99.TOP REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FKN COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 28-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011670. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 95 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : RIGAKU RAXIS IV REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 69056 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 25.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.0 REMARK 200 DATA REDUNDANCY : 2.000 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 13.7000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 68.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.25000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.59 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 22.5% PEG 8000, 0.1M NA-CACODYLATE, REMARK 280 0.2M AMMONIUM SULFATE, PH 7.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 42.92650 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 THE BETA-SECRETASE INHIBITOR OM99-2 IS PEPTIDE-LIKE, A MEMBER OF REMARK 400 INHIBITOR CLASS. REMARK 400 REMARK 400 GROUP: 1 REMARK 400 NAME: BETA-SECRETASE INHIBITOR OM99-2 REMARK 400 CHAIN: C, D REMARK 400 COMPONENT_1: PEPTIDE LIKE POLYMER REMARK 400 DESCRIPTION: NULL REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG B 43P REMARK 465 ARG B 44P REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CG2 THR B 314 N SER B 315 1.44 REMARK 500 CG2 THR B 314 O SER B 315 1.69 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 LEU A 234 N - CA - C ANGL. DEV. = -16.9 DEGREES REMARK 500 TYR B 222 CA - C - N ANGL. DEV. = -13.5 DEGREES REMARK 500 TYR B 222 O - C - N ANGL. DEV. = 9.7 DEGREES REMARK 500 ASP B 223 C - N - CA ANGL. DEV. = 17.5 DEGREES REMARK 500 LEU B 234 N - CA - C ANGL. DEV. = -16.6 DEGREES REMARK 500 THR B 314 CB - CA - C ANGL. DEV. = -17.6 DEGREES REMARK 500 THR B 314 N - CA - C ANGL. DEV. = 28.0 DEGREES REMARK 500 THR B 314 CA - C - O ANGL. DEV. = 12.8 DEGREES REMARK 500 THR B 314 CA - C - N ANGL. DEV. = -26.2 DEGREES REMARK 500 THR B 314 O - C - N ANGL. DEV. = 13.3 DEGREES REMARK 500 SER B 315 C - N - CA ANGL. DEV. = 24.6 DEGREES REMARK 500 GLU C 6 CA - C - N ANGL. DEV. = -20.9 DEGREES REMARK 500 GLU C 6 O - C - N ANGL. DEV. = 10.9 DEGREES REMARK 500 PHE C 7 C - N - CA ANGL. DEV. = 27.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 89 52.63 -97.93 REMARK 500 PHE A 108 -60.30 -105.88 REMARK 500 TRP A 197 -87.58 -141.62 REMARK 500 TYR A 222 98.75 -59.48 REMARK 500 ASP A 223 -19.04 97.80 REMARK 500 LYS A 224 156.30 157.08 REMARK 500 SER A 315 -171.78 -65.54 REMARK 500 ALA A 323 36.09 -92.57 REMARK 500 ASP A 363 -168.41 -129.42 REMARK 500 ASP A 378 51.09 39.05 REMARK 500 SER B 46P 77.36 77.51 REMARK 500 PHE B 47P 45.26 -143.09 REMARK 500 HIS B 89 50.55 -106.55 REMARK 500 PHE B 108 -60.16 -101.91 REMARK 500 ASN B 114 3.22 81.24 REMARK 500 ASP B 131 2.71 -69.02 REMARK 500 TRP B 197 -82.88 -142.94 REMARK 500 ASP B 223 -12.19 86.82 REMARK 500 LYS B 224 157.84 158.56 REMARK 500 SER B 253 -6.31 -56.62 REMARK 500 ALA B 272 123.81 -39.17 REMARK 500 THR B 314 177.41 -57.55 REMARK 500 ALA B 323 36.34 -94.31 REMARK 500 GLU D 6 59.52 80.20 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 1OL C 4 ALA C 5 -111.62 REMARK 500 1OL D 4 ALA D 5 -113.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 1OL C 4 30.71 REMARK 500 1OL D 4 32.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN C OF INHIBITOR REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN D OF INHIBITOR DBREF 1FKN A 43P 385 UNP P56817 BACE1_HUMAN 46 436 DBREF 1FKN B 43P 385 UNP P56817 BACE1_HUMAN 46 436 DBREF 1FKN C 1 7 PDB 1FKN 1FKN 1 7 DBREF 1FKN D 1 7 PDB 1FKN 1FKN 1 7 SEQRES 1 A 391 ARG ARG GLY SER PHE VAL GLU MET VAL ASP ASN LEU ARG SEQRES 2 A 391 GLY LYS SER GLY GLN GLY TYR TYR VAL GLU MET THR VAL SEQRES 3 A 391 GLY SER PRO PRO GLN THR LEU ASN ILE LEU VAL ASP THR SEQRES 4 A 391 GLY SER SER ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO SEQRES 5 A 391 PHE LEU HIS ARG TYR TYR GLN ARG GLN LEU SER SER THR SEQRES 6 A 391 TYR ARG ASP LEU ARG LYS GLY VAL TYR VAL PRO TYR THR SEQRES 7 A 391 GLN GLY LYS TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SEQRES 8 A 391 SER ILE PRO HIS GLY PRO ASN VAL THR VAL ARG ALA ASN SEQRES 9 A 391 ILE ALA ALA ILE THR GLU SER ASP LYS PHE PHE ILE ASN SEQRES 10 A 391 GLY SER ASN TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA SEQRES 11 A 391 GLU ILE ALA ARG PRO ASP ASP SER LEU GLU PRO PHE PHE SEQRES 12 A 391 ASP SER LEU VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SEQRES 13 A 391 SER LEU GLN LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SEQRES 14 A 391 SER GLU VAL LEU ALA SER VAL GLY GLY SER MET ILE ILE SEQRES 15 A 391 GLY GLY ILE ASP HIS SER LEU TYR THR GLY SER LEU TRP SEQRES 16 A 391 TYR THR PRO ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE SEQRES 17 A 391 ILE VAL ARG VAL GLU ILE ASN GLY GLN ASP LEU LYS MET SEQRES 18 A 391 ASP CYS LYS GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SEQRES 19 A 391 SER GLY THR THR ASN LEU ARG LEU PRO LYS LYS VAL PHE SEQRES 20 A 391 GLU ALA ALA VAL LYS SER ILE LYS ALA ALA SER SER THR SEQRES 21 A 391 GLU LYS PHE PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU SEQRES 22 A 391 VAL CYS TRP GLN ALA GLY THR THR PRO TRP ASN ILE PHE SEQRES 23 A 391 PRO VAL ILE SER LEU TYR LEU MET GLY GLU VAL THR ASN SEQRES 24 A 391 GLN SER PHE ARG ILE THR ILE LEU PRO GLN GLN TYR LEU SEQRES 25 A 391 ARG PRO VAL GLU ASP VAL ALA THR SER GLN ASP ASP CYS SEQRES 26 A 391 TYR LYS PHE ALA ILE SER GLN SER SER THR GLY THR VAL SEQRES 27 A 391 MET GLY ALA VAL ILE MET GLU GLY PHE TYR VAL VAL PHE SEQRES 28 A 391 ASP ARG ALA ARG LYS ARG ILE GLY PHE ALA VAL SER ALA SEQRES 29 A 391 CYS HIS VAL HIS ASP GLU PHE ARG THR ALA ALA VAL GLU SEQRES 30 A 391 GLY PRO PHE VAL THR LEU ASP MET GLU ASP CYS GLY TYR SEQRES 31 A 391 ASN SEQRES 1 B 391 ARG ARG GLY SER PHE VAL GLU MET VAL ASP ASN LEU ARG SEQRES 2 B 391 GLY LYS SER GLY GLN GLY TYR TYR VAL GLU MET THR VAL SEQRES 3 B 391 GLY SER PRO PRO GLN THR LEU ASN ILE LEU VAL ASP THR SEQRES 4 B 391 GLY SER SER ASN PHE ALA VAL GLY ALA ALA PRO HIS PRO SEQRES 5 B 391 PHE LEU HIS ARG TYR TYR GLN ARG GLN LEU SER SER THR SEQRES 6 B 391 TYR ARG ASP LEU ARG LYS GLY VAL TYR VAL PRO TYR THR SEQRES 7 B 391 GLN GLY LYS TRP GLU GLY GLU LEU GLY THR ASP LEU VAL SEQRES 8 B 391 SER ILE PRO HIS GLY PRO ASN VAL THR VAL ARG ALA ASN SEQRES 9 B 391 ILE ALA ALA ILE THR GLU SER ASP LYS PHE PHE ILE ASN SEQRES 10 B 391 GLY SER ASN TRP GLU GLY ILE LEU GLY LEU ALA TYR ALA SEQRES 11 B 391 GLU ILE ALA ARG PRO ASP ASP SER LEU GLU PRO PHE PHE SEQRES 12 B 391 ASP SER LEU VAL LYS GLN THR HIS VAL PRO ASN LEU PHE SEQRES 13 B 391 SER LEU GLN LEU CYS GLY ALA GLY PHE PRO LEU ASN GLN SEQRES 14 B 391 SER GLU VAL LEU ALA SER VAL GLY GLY SER MET ILE ILE SEQRES 15 B 391 GLY GLY ILE ASP HIS SER LEU TYR THR GLY SER LEU TRP SEQRES 16 B 391 TYR THR PRO ILE ARG ARG GLU TRP TYR TYR GLU VAL ILE SEQRES 17 B 391 ILE VAL ARG VAL GLU ILE ASN GLY GLN ASP LEU LYS MET SEQRES 18 B 391 ASP CYS LYS GLU TYR ASN TYR ASP LYS SER ILE VAL ASP SEQRES 19 B 391 SER GLY THR THR ASN LEU ARG LEU PRO LYS LYS VAL PHE SEQRES 20 B 391 GLU ALA ALA VAL LYS SER ILE LYS ALA ALA SER SER THR SEQRES 21 B 391 GLU LYS PHE PRO ASP GLY PHE TRP LEU GLY GLU GLN LEU SEQRES 22 B 391 VAL CYS TRP GLN ALA GLY THR THR PRO TRP ASN ILE PHE SEQRES 23 B 391 PRO VAL ILE SER LEU TYR LEU MET GLY GLU VAL THR ASN SEQRES 24 B 391 GLN SER PHE ARG ILE THR ILE LEU PRO GLN GLN TYR LEU SEQRES 25 B 391 ARG PRO VAL GLU ASP VAL ALA THR SER GLN ASP ASP CYS SEQRES 26 B 391 TYR LYS PHE ALA ILE SER GLN SER SER THR GLY THR VAL SEQRES 27 B 391 MET GLY ALA VAL ILE MET GLU GLY PHE TYR VAL VAL PHE SEQRES 28 B 391 ASP ARG ALA ARG LYS ARG ILE GLY PHE ALA VAL SER ALA SEQRES 29 B 391 CYS HIS VAL HIS ASP GLU PHE ARG THR ALA ALA VAL GLU SEQRES 30 B 391 GLY PRO PHE VAL THR LEU ASP MET GLU ASP CYS GLY TYR SEQRES 31 B 391 ASN SEQRES 1 C 7 GLU VAL ASN 1OL ALA GLU PHE SEQRES 1 D 7 GLU VAL ASN 1OL ALA GLU PHE HET 1OL C 4 13 HET 1OL D 4 13 HETNAM 1OL (2R,4S,5S)-5-AMINO-4-HYDROXY-2,7-DIMETHYLOCTANOIC ACID HETSYN 1OL LEU*ALA FORMUL 3 1OL 2(C10 H21 N O3) FORMUL 5 HOH *529(H2 O) HELIX 1 1 GLN A 53 SER A 57 5 5 HELIX 2 2 TYR A 123 ALA A 127 5 5 HELIX 3 3 PRO A 135 THR A 144 1 10 HELIX 4 4 ASN A 162 SER A 169 1 8 HELIX 5 5 ASP A 180 SER A 182 5 3 HELIX 6 6 ASP A 216 TYR A 222 5 7 HELIX 7 7 LYS A 238 SER A 252 1 15 HELIX 8 8 PRO A 258 LEU A 263 1 6 HELIX 9 9 PRO A 276 PHE A 280 5 5 HELIX 10 10 LEU A 301 TYR A 305 1 5 HELIX 11 11 GLY A 334 GLU A 339 1 6 HELIX 12 12 ASP A 378 GLY A 383 5 6 HELIX 13 13 GLN B 53 SER B 57 5 5 HELIX 14 14 TYR B 123 ALA B 127 5 5 HELIX 15 15 PRO B 135 THR B 144 1 10 HELIX 16 16 ASN B 162 SER B 169 1 8 HELIX 17 17 ASP B 180 SER B 182 5 3 HELIX 18 18 ASP B 216 TYR B 222 5 7 HELIX 19 19 LYS B 238 SER B 252 1 15 HELIX 20 20 PRO B 258 LEU B 263 1 6 HELIX 21 21 PRO B 276 PHE B 280 5 5 HELIX 22 22 LEU B 301 TYR B 305 1 5 HELIX 23 23 GLY B 334 GLU B 339 1 6 HELIX 24 24 ASP B 378 GLY B 383 5 6 SHEET 1 A10 LEU A 6 LYS A 9 0 SHEET 2 A10 GLY A 13 VAL A 20 -1 N GLY A 13 O LYS A 9 SHEET 3 A10 LYS A 75 SER A 86 -1 O SER A 86 N THR A 19 SHEET 4 A10 THR A 94 ASP A 106 -1 O VAL A 95 N VAL A 85 SHEET 5 A10 PHE A 38 GLY A 41 1 O PHE A 38 N ALA A 100 SHEET 6 A10 GLY A 117 GLY A 120 -1 N ILE A 118 O ALA A 39 SHEET 7 A10 GLN A 25 ASP A 32 1 O ASN A 28 N GLY A 117 SHEET 8 A10 GLY A 13 VAL A 20 -1 O TYR A 14 N VAL A 31 SHEET 9 A10 LYS A 75 SER A 86 -1 O SER A 86 N THR A 19 SHEET 10 A10 ARG A 61 PRO A 70 -1 N ARG A 61 O THR A 82 SHEET 1 B 5 GLY A 172 ILE A 176 0 SHEET 2 B 5 PHE A 150 LEU A 154 -1 O SER A 151 N ILE A 175 SHEET 3 B 5 PHE A 341 ASP A 346 -1 O PHE A 341 N LEU A 154 SHEET 4 B 5 ARG A 351 SER A 357 -1 N ARG A 351 O ASP A 346 SHEET 5 B 5 TYR A 184 PRO A 192 -1 N THR A 185 O VAL A 356 SHEET 1 C 5 GLN A 211 ASP A 212 0 SHEET 2 C 5 ILE A 203 ILE A 208 -1 O ILE A 208 N GLN A 211 SHEET 3 C 5 ILE A 283 MET A 288 -1 N SER A 284 O GLU A 207 SHEET 4 C 5 GLN A 294 ILE A 300 -1 O PHE A 296 N LEU A 287 SHEET 5 C 5 ALA A 369 VAL A 375 -1 O ALA A 369 N THR A 299 SHEET 1 D 4 SER A 225 VAL A 227 0 SHEET 2 D 4 THR A 331 MET A 333 1 O THR A 331 N ILE A 226 SHEET 3 D 4 LEU A 234 PRO A 237 -1 O ARG A 235 N VAL A 332 SHEET 4 D 4 ILE A 324 SER A 327 1 O SER A 325 N LEU A 236 SHEET 1 E 3 VAL A 268 TRP A 270 0 SHEET 2 E 3 ASP A 318 PHE A 322 -1 N ASP A 318 O TRP A 270 SHEET 3 E 3 LEU A 306 VAL A 309 -1 N ARG A 307 O LYS A 321 SHEET 1 F10 LEU B 6 LYS B 9 0 SHEET 2 F10 GLY B 13 VAL B 20 -1 N GLY B 13 O LYS B 9 SHEET 3 F10 LYS B 75 SER B 86 -1 O SER B 86 N THR B 19 SHEET 4 F10 VAL B 95 ASP B 106 -1 O VAL B 95 N VAL B 85 SHEET 5 F10 PHE B 38 GLY B 41 1 O PHE B 38 N ALA B 100 SHEET 6 F10 GLY B 117 GLY B 120 -1 N ILE B 118 O ALA B 39 SHEET 7 F10 GLN B 25 ASP B 32 1 O ASN B 28 N GLY B 117 SHEET 8 F10 GLY B 13 VAL B 20 -1 O TYR B 14 N VAL B 31 SHEET 9 F10 LYS B 75 SER B 86 -1 O SER B 86 N THR B 19 SHEET 10 F10 ARG B 61 PRO B 70 -1 N ARG B 61 O THR B 82 SHEET 1 G 5 GLY B 172 ILE B 176 0 SHEET 2 G 5 PHE B 150 LEU B 154 -1 N SER B 151 O ILE B 175 SHEET 3 G 5 PHE B 341 ASP B 346 -1 O PHE B 341 N LEU B 154 SHEET 4 G 5 ARG B 351 SER B 357 -1 N ARG B 351 O ASP B 346 SHEET 5 G 5 TYR B 184 PRO B 192 -1 N THR B 185 O VAL B 356 SHEET 1 H 5 GLN B 211 ASP B 212 0 SHEET 2 H 5 ILE B 203 ILE B 208 -1 N ILE B 208 O GLN B 211 SHEET 3 H 5 ILE B 283 MET B 288 -1 N SER B 284 O GLU B 207 SHEET 4 H 5 GLN B 294 ILE B 300 -1 O PHE B 296 N LEU B 287 SHEET 5 H 5 ALA B 369 VAL B 375 -1 O ALA B 369 N THR B 299 SHEET 1 I 4 SER B 225 VAL B 227 0 SHEET 2 I 4 THR B 331 MET B 333 1 O THR B 331 N ILE B 226 SHEET 3 I 4 LEU B 234 PRO B 237 -1 N ARG B 235 O VAL B 332 SHEET 4 I 4 ILE B 324 SER B 327 1 O SER B 325 N LEU B 236 SHEET 1 J 3 VAL B 268 TRP B 270 0 SHEET 2 J 3 ASP B 318 PHE B 322 -1 N ASP B 318 O TRP B 270 SHEET 3 J 3 LEU B 306 VAL B 309 -1 N ARG B 307 O LYS B 321 SSBOND 1 CYS A 155 CYS A 359 1555 1555 2.05 SSBOND 2 CYS A 217 CYS A 382 1555 1555 2.03 SSBOND 3 CYS A 269 CYS A 319 1555 1555 2.04 SSBOND 4 CYS B 155 CYS B 359 1555 1555 2.04 SSBOND 5 CYS B 217 CYS B 382 1555 1555 2.04 SSBOND 6 CYS B 269 CYS B 319 1555 1555 2.05 LINK C ASN C 3 N 1OL C 4 1555 1555 1.33 LINK C 1OL C 4 N ALA C 5 1555 1555 1.34 LINK C ASN D 3 N 1OL D 4 1555 1555 1.33 LINK C 1OL D 4 N ALA D 5 1555 1555 1.33 CISPEP 1 SER A 22 PRO A 23 0 -0.14 CISPEP 2 ARG A 128 PRO A 129 0 0.08 CISPEP 3 GLY A 372 PRO A 373 0 -0.05 CISPEP 4 SER B 22 PRO B 23 0 -0.30 CISPEP 5 ARG B 128 PRO B 129 0 0.45 CISPEP 6 GLY B 372 PRO B 373 0 -0.16 SITE 1 AC1 25 SER A 10 GLY A 11 ASP A 32 GLY A 34 SITE 2 AC1 25 SER A 35 PRO A 70 TYR A 71 THR A 72 SITE 3 AC1 25 GLN A 73 PHE A 108 ILE A 110 TYR A 198 SITE 4 AC1 25 LYS A 224 ASP A 228 GLY A 230 THR A 231 SITE 5 AC1 25 THR A 232 ARG A 235 THR A 329 HOH A 490 SITE 6 AC1 25 HOH C 9 HOH C 10 HOH C 11 HOH C 12 SITE 7 AC1 25 HOH C 13 SITE 1 AC2 27 SER B 10 GLY B 11 ASP B 32 GLY B 34 SITE 2 AC2 27 SER B 35 PRO B 70 TYR B 71 THR B 72 SITE 3 AC2 27 GLN B 73 PHE B 108 TYR B 198 ASP B 228 SITE 4 AC2 27 GLY B 230 THR B 231 THR B 232 ARG B 235 SITE 5 AC2 27 SER B 328 HOH B 440 HOH B 449 HOH B 498 SITE 6 AC2 27 HOH B 566 HOH B 583 HOH D 9 HOH D 10 SITE 7 AC2 27 HOH D 11 HOH D 13 HOH D 14 CRYST1 53.652 85.853 109.237 90.00 101.36 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018639 0.000000 0.003745 0.00000 SCALE2 0.000000 0.011648 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009337 0.00000