data_1FKY # _entry.id 1FKY # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.355 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FKY pdb_00001fky 10.2210/pdb1fky/pdb WWPDB D_1000173326 ? ? # _pdbx_database_related.db_name PDB _pdbx_database_related.db_id 1FKZ _pdbx_database_related.details 'ENSEMBLE OF 2 STRUCTURES' _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FKY _pdbx_database_status.recvd_initial_deposition_date 1996-10-09 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Boulard, Y.' 1 'Cognet, J.A.H.' 2 'Fazakerley, G.V.' 3 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary ;Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. ; J.Mol.Biol. 268 331 347 1997 JMOBAK UK 0022-2836 0070 ? 9159474 10.1006/jmbi.1997.0975 1 ;Solution Structure of an Oncogenic DNA Duplex, the K-Ras Gene and the Sequence Containing a Central C.A or A.G Mismatch as a Function of Ph: Nuclear Magnetic Resonance and Molecular Dynamics Studies ; J.Mol.Biol. 246 194 ? 1995 JMOBAK UK 0022-2836 0070 ? ? ? 2 ;Helical Parameters, Fluctuations, Alternative Hydrogen Bonding, and Bending in Oligonucleotides Containing a Mismatched Base-Pair by Noesy Distance Restrained and Distance Free Molecular Dynamics ; J.Mol.Biol. 246 209 ? 1995 JMOBAK UK 0022-2836 0070 ? ? ? 3 'Solution Structure of Two Mismatches A.A and T.T in the K-Ras Gene Context by Nuclear Magnetic Resonance and Molecular Dynamics' Eur.J.Biochem. 228 279 ? 1995 EJBCAI IX 0014-2956 0262 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Boulard, Y.' 1 ? primary 'Cognet, J.A.' 2 ? primary 'Fazakerley, G.V.' 3 ? 1 'Boulard, Y.' 4 ? 1 'Cognet, J.A.' 5 ? 1 'Gabarro-Arpa, J.' 6 ? 1 'Le Bret, M.' 7 ? 1 'Carbonnaux, C.' 8 ? 1 'Fazakerley, G.V.' 9 ? 2 'Cognet, J.A.' 10 ? 2 'Boulard, Y.' 11 ? 2 'Fazakerley, G.V.' 12 ? 3 'Gervais, V.' 13 ? 3 'Cognet, J.A.' 14 ? 3 'Le Bret, M.' 15 ? 3 'Sowers, L.C.' 16 ? 3 'Fazakerley, G.V.' 17 ? # _cell.entry_id 1FKY _cell.length_a 1.000 _cell.length_b 1.000 _cell.length_c 1.000 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 1 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FKY _symmetry.space_group_name_H-M 'P 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3') ; 3279.151 1 ? ? ? ? 2 polymer syn ;DNA (5'-D(*GP*AP*GP*CP*TP*TP*GP*TP*GP*GP*C)-3') ; 3405.220 1 ? ? ? ? # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 polydeoxyribonucleotide no no '(DG)(DC)(DC)(DA)(DC)(DC)(DA)(DG)(DC)(DT)(DC)' GCCACCAGCTC A ? 2 polydeoxyribonucleotide no no '(DG)(DA)(DG)(DC)(DT)(DT)(DG)(DT)(DG)(DG)(DC)' GAGCTTGTGGC B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DG n 1 2 DC n 1 3 DC n 1 4 DA n 1 5 DC n 1 6 DC n 1 7 DA n 1 8 DG n 1 9 DC n 1 10 DT n 1 11 DC n 2 1 DG n 2 2 DA n 2 3 DG n 2 4 DC n 2 5 DT n 2 6 DT n 2 7 DG n 2 8 DT n 2 9 DG n 2 10 DG n 2 11 DC n # loop_ _struct_ref.id _struct_ref.entity_id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.pdbx_db_isoform _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin 1 1 PDB 1FKY 1FKY ? ? ? 2 2 PDB 1FKY 1FKY ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FKY A 1 ? 11 ? 1FKY 1 ? 11 ? 1 11 2 2 1FKY B 1 ? 11 ? 1FKY 12 ? 22 ? 12 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 # _pdbx_nmr_refine.entry_id 1FKY _pdbx_nmr_refine.method ? _pdbx_nmr_refine.details 'MORCAD BY LEBRET ALSO WAS USED.' _pdbx_nmr_refine.software_ordinal 1 # _pdbx_nmr_ensemble.entry_id 1FKY _pdbx_nmr_ensemble.conformers_calculated_total_number 2 _pdbx_nmr_ensemble.conformers_submitted_total_number 2 _pdbx_nmr_ensemble.conformer_selection_criteria ? # _pdbx_nmr_software.classification refinement _pdbx_nmr_software.name Amber _pdbx_nmr_software.version ? _pdbx_nmr_software.authors KOLLMAN _pdbx_nmr_software.ordinal 1 # _exptl.entry_id 1FKY _exptl.method 'SOLUTION NMR' _exptl.crystals_number ? # _struct.entry_id 1FKY _struct.title 'NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FKY _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'DEOXYRIBONUCLEIC ACID, B-DNA, K-RAS, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role hydrog1 hydrog ? ? A DG 1 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 1 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DG 1 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 1 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DG 1 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 1 B DC 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DC 2 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DC 2 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DC 2 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 2 B DG 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 9 N1 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 9 O6 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 9 N2 ? ? A DC 3 B DG 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DA 4 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DA 4 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 4 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DT 6 O4 ? ? A DC 5 B DT 17 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog13 hydrog ? ? A DC 5 N3 ? ? ? 1_555 B DG 7 N1 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DC 5 N4 ? ? ? 1_555 B DG 7 O6 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DC 5 O2 ? ? ? 1_555 B DG 7 N2 ? ? A DC 5 B DG 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DT 5 O4 ? ? A DC 6 B DT 16 1_555 ? ? ? ? ? ? 'DC-DT MISPAIR' ? ? ? hydrog17 hydrog ? ? A DC 6 N3 ? ? ? 1_555 B DT 6 N3 ? ? A DC 6 B DT 17 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog18 hydrog ? ? A DC 6 N4 ? ? ? 1_555 B DT 6 O4 ? ? A DC 6 B DT 17 1_555 ? ? ? ? ? ? TYPE_18_PAIR ? ? ? hydrog19 hydrog ? ? A DA 7 N1 ? ? ? 1_555 B DT 5 N3 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DA 7 N6 ? ? ? 1_555 B DT 5 O4 ? ? A DA 7 B DT 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DG 8 N1 ? ? ? 1_555 B DC 4 N3 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DG 8 N2 ? ? ? 1_555 B DC 4 O2 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DG 8 O6 ? ? ? 1_555 B DC 4 N4 ? ? A DG 8 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 3 N1 ? ? A DC 9 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 3 O6 ? ? A DC 9 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 3 N2 ? ? A DC 9 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DT 10 N3 ? ? ? 1_555 B DA 2 N1 ? ? A DT 10 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DT 10 O4 ? ? ? 1_555 B DA 2 N6 ? ? A DT 10 B DA 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 1 N1 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 1 O6 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 1 N2 ? ? A DC 11 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # _struct_conn_type.id hydrog _struct_conn_type.criteria ? _struct_conn_type.reference ? # _database_PDB_matrix.entry_id 1FKY _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1FKY _atom_sites.fract_transf_matrix[1][1] 1.000000 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 1.000000 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 1.000000 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O P # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DG 1 1 1 DG G A . n A 1 2 DC 2 2 2 DC C A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DA 4 4 4 DA A A . n A 1 5 DC 5 5 5 DC C A . n A 1 6 DC 6 6 6 DC C A . n A 1 7 DA 7 7 7 DA A A . n A 1 8 DG 8 8 8 DG G A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DT 10 10 10 DT T A . n A 1 11 DC 11 11 11 DC C A . n B 2 1 DG 1 12 12 DG G B . n B 2 2 DA 2 13 13 DA A B . n B 2 3 DG 3 14 14 DG G B . n B 2 4 DC 4 15 15 DC C B . n B 2 5 DT 5 16 16 DT T B . n B 2 6 DT 6 17 17 DT T B . n B 2 7 DG 7 18 18 DG G B . n B 2 8 DT 8 19 19 DT T B . n B 2 9 DG 9 20 20 DG G B . n B 2 10 DG 10 21 21 DG G B . n B 2 11 DC 11 22 22 DC C B . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1997-04-01 2 'Structure model' 1 1 2008-03-24 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2022-02-23 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' 6 4 'Structure model' Other # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_nmr_software 4 4 'Structure model' pdbx_struct_assembly 5 4 'Structure model' pdbx_struct_oper_list # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_pdbx_nmr_software.name' # _software.name AMBER _software.classification refinement _software.version . _software.citation_id ? _software.pdbx_ordinal 1 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.67 108.30 3.37 0.30 N 2 1 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 110.77 108.30 2.47 0.30 N 3 1 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 110.42 108.30 2.12 0.30 N 4 1 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.30 108.30 2.00 0.30 N 5 1 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 111.39 108.30 3.09 0.30 N 6 1 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.07 108.30 2.77 0.30 N 7 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.35 108.30 2.05 0.30 N 8 1 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 110.92 108.30 2.62 0.30 N 9 1 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 110.37 108.30 2.07 0.30 N 10 1 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 111.95 108.30 3.65 0.30 N 11 1 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 110.94 108.30 2.64 0.30 N 12 1 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 111.16 108.30 2.86 0.30 N 13 1 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 110.55 108.30 2.25 0.30 N 14 1 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.73 108.30 2.43 0.30 N 15 1 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 110.32 108.30 2.02 0.30 N 16 1 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.17 108.30 1.87 0.30 N 17 2 "O4'" A DG 1 ? ? "C1'" A DG 1 ? ? N9 A DG 1 ? ? 111.56 108.30 3.26 0.30 N 18 2 "O4'" A DC 2 ? ? "C1'" A DC 2 ? ? N1 A DC 2 ? ? 111.66 108.30 3.36 0.30 N 19 2 "O4'" A DC 3 ? ? "C1'" A DC 3 ? ? N1 A DC 3 ? ? 111.12 108.30 2.82 0.30 N 20 2 "O4'" A DA 4 ? ? "C1'" A DA 4 ? ? N9 A DA 4 ? ? 110.37 108.30 2.07 0.30 N 21 2 "O4'" A DC 5 ? ? "C1'" A DC 5 ? ? N1 A DC 5 ? ? 110.66 108.30 2.36 0.30 N 22 2 "O4'" A DC 6 ? ? "C1'" A DC 6 ? ? N1 A DC 6 ? ? 111.72 108.30 3.42 0.30 N 23 2 "O4'" A DG 8 ? ? "C1'" A DG 8 ? ? N9 A DG 8 ? ? 111.48 108.30 3.18 0.30 N 24 2 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 110.62 108.30 2.32 0.30 N 25 2 "O4'" A DT 10 ? ? "C1'" A DT 10 ? ? N1 A DT 10 ? ? 110.66 108.30 2.36 0.30 N 26 2 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 110.30 108.30 2.00 0.30 N 27 2 "O4'" B DG 12 ? ? "C1'" B DG 12 ? ? N9 B DG 12 ? ? 111.04 108.30 2.74 0.30 N 28 2 "O4'" B DA 13 ? ? "C1'" B DA 13 ? ? N9 B DA 13 ? ? 110.92 108.30 2.62 0.30 N 29 2 "O4'" B DG 14 ? ? "C1'" B DG 14 ? ? N9 B DG 14 ? ? 112.13 108.30 3.83 0.30 N 30 2 "O4'" B DC 15 ? ? "C1'" B DC 15 ? ? N1 B DC 15 ? ? 111.68 108.30 3.38 0.30 N 31 2 "O4'" B DT 16 ? ? "C1'" B DT 16 ? ? N1 B DT 16 ? ? 110.58 108.30 2.28 0.30 N 32 2 "O4'" B DT 17 ? ? "C1'" B DT 17 ? ? N1 B DT 17 ? ? 112.52 108.30 4.22 0.30 N 33 2 "O4'" B DG 18 ? ? "C1'" B DG 18 ? ? N9 B DG 18 ? ? 110.97 108.30 2.67 0.30 N 34 2 "O4'" B DT 19 ? ? "C1'" B DT 19 ? ? N1 B DT 19 ? ? 110.30 108.30 2.00 0.30 N 35 2 "O4'" B DG 20 ? ? "C1'" B DG 20 ? ? N9 B DG 20 ? ? 111.30 108.30 3.00 0.30 N 36 2 "O4'" B DG 21 ? ? "C1'" B DG 21 ? ? N9 B DG 21 ? ? 110.61 108.30 2.31 0.30 N 37 2 "O4'" B DC 22 ? ? "C1'" B DC 22 ? ? N1 B DC 22 ? ? 110.19 108.30 1.89 0.30 N # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1FKY 'double helix' 1FKY 'b-form double helix' 1FKY 'mismatched base pair' 1FKY 'triple helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DG 1 1_555 B DC 11 1_555 -0.795 -0.280 0.207 -10.506 -15.975 -2.237 1 A_DG1:DC22_B A 1 ? B 22 ? 19 1 1 A DC 2 1_555 B DG 10 1_555 0.870 -0.323 0.481 -15.307 -8.872 -3.315 2 A_DC2:DG21_B A 2 ? B 21 ? 19 1 1 A DC 3 1_555 B DG 9 1_555 0.998 -0.387 0.569 -16.319 -5.076 -2.988 3 A_DC3:DG20_B A 3 ? B 20 ? 19 1 1 A DA 4 1_555 B DT 8 1_555 0.290 -0.118 0.559 -4.906 -6.644 -0.719 4 A_DA4:DT19_B A 4 ? B 19 ? 20 1 1 A DC 5 1_555 B DG 7 1_555 1.105 -0.418 0.566 -6.112 -4.534 -0.994 5 A_DC5:DG18_B A 5 ? B 18 ? 19 1 1 A DC 6 1_555 B DT 6 1_555 0.252 -1.717 0.719 3.004 -7.909 5.854 6 A_DC6:DT17_B A 6 ? B 17 ? 18 1 1 A DA 7 1_555 B DT 5 1_555 -0.684 -0.230 0.468 12.819 -11.230 2.614 7 A_DA7:DT16_B A 7 ? B 16 ? 20 1 1 A DG 8 1_555 B DC 4 1_555 -0.972 -0.348 0.630 13.849 -2.479 -2.378 8 A_DG8:DC15_B A 8 ? B 15 ? 19 1 1 A DC 9 1_555 B DG 3 1_555 -0.170 -0.147 0.629 6.846 -9.457 -3.761 9 A_DC9:DG14_B A 9 ? B 14 ? 19 1 1 A DT 10 1_555 B DA 2 1_555 -0.228 -0.046 0.032 11.910 -18.054 -3.230 10 A_DT10:DA13_B A 10 ? B 13 ? 20 1 1 A DC 11 1_555 B DG 1 1_555 0.745 -0.278 0.211 3.616 -18.204 -2.547 11 A_DC11:DG12_B A 11 ? B 12 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DG 1 1_555 B DC 11 1_555 A DC 2 1_555 B DG 10 1_555 -0.059 -0.747 3.334 -0.340 -1.825 45.008 -0.807 0.046 3.361 -2.383 0.444 45.044 1 AA_DG1DC2:DG21DC22_BB A 1 ? B 22 ? A 2 ? B 21 ? 1 A DC 2 1_555 B DG 10 1_555 A DC 3 1_555 B DG 9 1_555 0.004 -0.864 3.165 1.188 -2.541 38.791 -0.996 0.135 3.212 -3.819 -1.785 38.888 2 AA_DC2DC3:DG20DG21_BB A 2 ? B 21 ? A 3 ? B 20 ? 1 A DC 3 1_555 B DG 9 1_555 A DA 4 1_555 B DT 8 1_555 0.159 -0.783 2.755 2.458 -3.042 35.009 -0.907 0.049 2.815 -5.038 -4.070 35.220 3 AA_DC3DA4:DT19DG20_BB A 3 ? B 20 ? A 4 ? B 19 ? 1 A DA 4 1_555 B DT 8 1_555 A DC 5 1_555 B DG 7 1_555 -0.006 -0.906 3.393 -0.667 -6.595 38.995 -0.517 -0.074 3.494 -9.794 0.991 39.533 4 AA_DA4DC5:DG18DT19_BB A 4 ? B 19 ? A 5 ? B 18 ? 1 A DC 5 1_555 B DG 7 1_555 A DC 6 1_555 B DT 6 1_555 0.731 -0.516 2.919 -0.676 -6.594 39.018 -0.062 -1.151 2.951 -9.786 1.003 39.555 5 AA_DC5DC6:DT17DG18_BB A 5 ? B 18 ? A 6 ? B 17 ? 1 A DC 6 1_555 B DT 6 1_555 A DA 7 1_555 B DT 5 1_555 -0.796 -0.426 2.942 1.790 -4.020 37.545 -0.191 1.437 2.931 -6.220 -2.770 37.793 6 AA_DC6DA7:DT16DT17_BB A 6 ? B 17 ? A 7 ? B 16 ? 1 A DA 7 1_555 B DT 5 1_555 A DG 8 1_555 B DC 4 1_555 0.104 -1.123 3.181 -3.815 -6.265 33.471 -0.919 -0.779 3.300 -10.718 6.527 34.243 7 AA_DA7DG8:DC15DT16_BB A 7 ? B 16 ? A 8 ? B 15 ? 1 A DG 8 1_555 B DC 4 1_555 A DC 9 1_555 B DG 3 1_555 -0.334 -0.913 3.426 -1.971 -3.099 42.330 -0.927 0.249 3.493 -4.283 2.723 42.482 8 AA_DG8DC9:DG14DC15_BB A 8 ? B 15 ? A 9 ? B 14 ? 1 A DC 9 1_555 B DG 3 1_555 A DT 10 1_555 B DA 2 1_555 -0.339 -0.860 2.967 2.719 -4.229 35.550 -0.839 0.908 3.013 -6.884 -4.426 35.892 9 AA_DC9DT10:DA13DG14_BB A 9 ? B 14 ? A 10 ? B 13 ? 1 A DT 10 1_555 B DA 2 1_555 A DC 11 1_555 B DG 1 1_555 -0.003 -0.670 3.341 -3.692 -0.264 43.031 -0.884 -0.366 3.334 -0.359 5.022 43.183 10 AA_DT10DC11:DG12DA13_BB A 10 ? B 13 ? A 11 ? B 12 ? #