HEADER TRANSFERASE 17-AUG-00 1FMJ TITLE CRYSTAL STRUCTURE OF MERCURY DERIVATIVE OF RETINOL DEHYDRATASE IN A TITLE 2 COMPLEX WITH RETINOL AND PAP COMPND MOL_ID: 1; COMPND 2 MOLECULE: RETINOL DEHYDRATASE; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SPODOPTERA FRUGIPERDA; SOURCE 3 ORGANISM_COMMON: FALL ARMYWORM; SOURCE 4 ORGANISM_TAXID: 7108; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PET-15B KEYWDS SULFOTRANSFERASE, DEHYDRATASE, RETINOL, ADENOSINE 3', 5'-DIPHOSPHATE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR S.PAKHOMOVA,M.KOBAYASHI,J.BUCK,M.E.NEWCOMER REVDAT 4 03-APR-24 1FMJ 1 REMARK REVDAT 3 07-FEB-24 1FMJ 1 REMARK LINK REVDAT 2 24-FEB-09 1FMJ 1 VERSN REVDAT 1 02-MAY-01 1FMJ 0 JRNL AUTH S.PAKHOMOVA,M.KOBAYASHI,J.BUCK,M.E.NEWCOMER JRNL TITL A HELICAL LID CONVERTS A SULFOTRANSFERASE TO A DEHYDRATASE. JRNL REF NAT.STRUCT.BIOL. V. 8 447 2001 JRNL REFN ISSN 1072-8368 JRNL PMID 11323722 JRNL DOI 10.1038/87617 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 88.1 REMARK 3 NUMBER OF REFLECTIONS : 46863 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.264 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.600 REMARK 3 FREE R VALUE TEST SET COUNT : 3576 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5644 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 104 REMARK 3 SOLVENT ATOMS : 273 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.80 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 25.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.32000 REMARK 3 B22 (A**2) : -0.38000 REMARK 3 B33 (A**2) : -0.94000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -2.26000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.26 REMARK 3 ESD FROM SIGMAA (A) : 0.21 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.28 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.006 REMARK 3 BOND ANGLES (DEGREES) : 1.300 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 21.80 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.810 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 0.850 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 1.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.310 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 1.850 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.41 REMARK 3 BSOL : 54.72 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : A3P_XPLOR_PAR.TXT REMARK 3 PARAMETER FILE 3 : LIGANDS1.PAR REMARK 3 PARAMETER FILE 4 : WATER.PARAM REMARK 3 PARAMETER FILE 5 : CIS_PEPTIDE.PARAM REMARK 3 PARAMETER FILE 6 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : A3P_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 3 : RTL_XPLOR_TOP.TXT REMARK 3 TOPOLOGY FILE 4 : WATER.TOP REMARK 3 TOPOLOGY FILE 5 : ION.PAR REMARK 3 TOPOLOGY FILE 6 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FMJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011716. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 10-DEC-99 REMARK 200 TEMPERATURE (KELVIN) : 103 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 14-BM-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48540 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 88.1 REMARK 200 DATA REDUNDANCY : 2.950 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.08400 REMARK 200 FOR THE DATA SET : 19.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.05 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.34 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.22700 REMARK 200 FOR SHELL : 6.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: 1FMJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.50 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.50 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 3350, CALCIUM CHLORIDE, HEPES, REMARK 280 GLYCEROL, EMTS, PH 6.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 284K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 33.09150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 GLU A 2 REMARK 465 LYS A 3 REMARK 465 GLN A 4 REMARK 465 GLN A 5 REMARK 465 ASP A 6 REMARK 465 LEU A 7 REMARK 465 GLU A 350 REMARK 465 LEU A 351 REMARK 465 MET B 1 REMARK 465 GLU B 2 REMARK 465 LYS B 3 REMARK 465 GLN B 4 REMARK 465 GLN B 5 REMARK 465 ASP B 6 REMARK 465 LEU B 7 REMARK 465 GLU B 350 REMARK 465 LEU B 351 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 128 CG CD OE1 OE2 REMARK 470 ASN A 129 CG OD1 ND2 REMARK 470 LYS A 206 CG CD CE NZ REMARK 470 GLN A 207 CG CD OE1 NE2 REMARK 470 GLU A 273 CG CD OE1 OE2 REMARK 470 GLN A 276 CG CD OE1 NE2 REMARK 470 GLU A 332 CG CD OE1 OE2 REMARK 470 ASN A 348 CG OD1 ND2 REMARK 470 GLU B 128 CG CD OE1 OE2 REMARK 470 ASN B 129 CG OD1 ND2 REMARK 470 LYS B 206 CG CD CE NZ REMARK 470 GLN B 207 CG CD OE1 NE2 REMARK 470 GLU B 273 CG CD OE1 OE2 REMARK 470 ASN B 348 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 25 4.22 -62.48 REMARK 500 ASN A 27 -31.20 -133.12 REMARK 500 SER A 70 167.31 173.28 REMARK 500 ALA A 95 1.39 -69.94 REMARK 500 ASP A 254 79.35 -150.67 REMARK 500 MET A 295 17.65 57.01 REMARK 500 ARG A 312 -77.49 -97.16 REMARK 500 SER B 70 168.24 173.67 REMARK 500 GLN B 72 150.40 -45.99 REMARK 500 ASN B 88 40.82 -101.24 REMARK 500 ASP B 89 53.04 38.73 REMARK 500 ARG B 312 -86.33 -90.53 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 71 0.07 SIDE CHAIN REMARK 500 TYR B 71 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 402 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 118 O REMARK 620 2 ASN A 121 OD1 85.4 REMARK 620 3 ASP A 122 OD1 91.4 63.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 451 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 254 O REMARK 620 2 CYS A 258 SG 90.9 REMARK 620 3 CYS A 258 N 62.7 75.5 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 452 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 279 SG REMARK 620 2 GLU A 280 N 86.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG A 453 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 ASP A 321 OD2 109.3 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 118 O REMARK 620 2 ASN B 121 OD1 91.6 REMARK 620 3 ASP B 122 OD1 98.4 79.2 REMARK 620 4 ASP B 122 OD2 59.6 91.3 40.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 551 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 254 O REMARK 620 2 CYS B 258 SG 88.7 REMARK 620 3 CYS B 258 N 60.2 71.1 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HG B 553 HG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 318 SG REMARK 620 2 ASP B 321 OD2 111.7 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 451 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 452 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG A 453 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 551 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 552 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HG B 553 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P A 400 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE A3P B 500 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE RTL B 501 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FML RELATED DB: PDB REMARK 900 1FML CONTAINS THE NATIVE FORM OF THE SAME PROTEIN. DBREF 1FMJ A 1 351 UNP Q26490 Q26490_SPOFR 1 351 DBREF 1FMJ B 1 351 UNP Q26490 Q26490_SPOFR 1 351 SEQADV 1FMJ SER A 142 UNP Q26490 PHE 142 SEE REMARK 999 SEQADV 1FMJ SER B 142 UNP Q26490 PHE 142 SEE REMARK 999 SEQRES 1 A 351 MET GLU LYS GLN GLN ASP LEU PRO PHE PRO TYR GLU PHE SEQRES 2 A 351 ARG GLU LEU ASN PRO GLU GLU ASP LYS LEU VAL LYS ALA SEQRES 3 A 351 ASN LEU GLY ALA PHE PRO THR THR TYR VAL LYS LEU GLY SEQRES 4 A 351 PRO LYS GLY TYR MET VAL TYR ARG PRO TYR LEU LYS ASP SEQRES 5 A 351 ALA ALA ASN ILE TYR ASN MET PRO LEU ARG PRO THR ASP SEQRES 6 A 351 VAL PHE VAL ALA SER TYR GLN ARG SER GLY THR THR MET SEQRES 7 A 351 THR GLN GLU LEU VAL TRP LEU ILE GLU ASN ASP LEU ASN SEQRES 8 A 351 PHE GLU ALA ALA LYS THR TYR MET SER LEU ARG TYR ILE SEQRES 9 A 351 TYR LEU ASP GLY PHE MET ILE TYR ASP PRO GLU LYS GLN SEQRES 10 A 351 GLU GLU TYR ASN ASP ILE LEU PRO ASN PRO GLU ASN LEU SEQRES 11 A 351 ASP MET GLU ARG TYR LEU GLY LEU LEU GLU TYR SER SER SEQRES 12 A 351 ARG PRO GLY SER SER LEU LEU ALA ALA VAL PRO PRO THR SEQRES 13 A 351 GLU LYS ARG PHE VAL LYS THR HIS LEU PRO LEU SER LEU SEQRES 14 A 351 MET PRO PRO ASN MET LEU ASP THR VAL LYS MET VAL TYR SEQRES 15 A 351 LEU ALA ARG ASP PRO ARG ASP VAL ALA VAL SER SER PHE SEQRES 16 A 351 HIS HIS ALA ARG LEU LEU TYR LEU LEU ASN LYS GLN SER SEQRES 17 A 351 ASN PHE LYS ASP PHE TRP GLU MET PHE HIS ARG GLY LEU SEQRES 18 A 351 TYR THR LEU THR PRO TYR PHE GLU HIS VAL LYS GLU ALA SEQRES 19 A 351 TRP ALA LYS ARG HIS ASP PRO ASN MET LEU PHE LEU PHE SEQRES 20 A 351 TYR GLU ASP TYR LEU LYS ASP LEU PRO GLY CYS ILE ALA SEQRES 21 A 351 ARG ILE ALA ASP PHE LEU GLY LYS LYS LEU SER GLU GLU SEQRES 22 A 351 GLN ILE GLN ARG LEU CYS GLU HIS LEU ASN PHE GLU LYS SEQRES 23 A 351 PHE LYS ASN ASN GLY ALA VAL ASN MET GLU ASP TYR ARG SEQRES 24 A 351 GLU ILE GLY ILE LEU ALA ASP GLY GLU HIS PHE ILE ARG SEQRES 25 A 351 LYS GLY LYS ALA GLY CYS TRP ARG ASP TYR PHE ASP GLU SEQRES 26 A 351 GLU MET THR LYS GLN ALA GLU LYS TRP ILE LYS ASP ASN SEQRES 27 A 351 LEU LYS ASP THR ASP LEU ARG TYR PRO ASN MET GLU LEU SEQRES 1 B 351 MET GLU LYS GLN GLN ASP LEU PRO PHE PRO TYR GLU PHE SEQRES 2 B 351 ARG GLU LEU ASN PRO GLU GLU ASP LYS LEU VAL LYS ALA SEQRES 3 B 351 ASN LEU GLY ALA PHE PRO THR THR TYR VAL LYS LEU GLY SEQRES 4 B 351 PRO LYS GLY TYR MET VAL TYR ARG PRO TYR LEU LYS ASP SEQRES 5 B 351 ALA ALA ASN ILE TYR ASN MET PRO LEU ARG PRO THR ASP SEQRES 6 B 351 VAL PHE VAL ALA SER TYR GLN ARG SER GLY THR THR MET SEQRES 7 B 351 THR GLN GLU LEU VAL TRP LEU ILE GLU ASN ASP LEU ASN SEQRES 8 B 351 PHE GLU ALA ALA LYS THR TYR MET SER LEU ARG TYR ILE SEQRES 9 B 351 TYR LEU ASP GLY PHE MET ILE TYR ASP PRO GLU LYS GLN SEQRES 10 B 351 GLU GLU TYR ASN ASP ILE LEU PRO ASN PRO GLU ASN LEU SEQRES 11 B 351 ASP MET GLU ARG TYR LEU GLY LEU LEU GLU TYR SER SER SEQRES 12 B 351 ARG PRO GLY SER SER LEU LEU ALA ALA VAL PRO PRO THR SEQRES 13 B 351 GLU LYS ARG PHE VAL LYS THR HIS LEU PRO LEU SER LEU SEQRES 14 B 351 MET PRO PRO ASN MET LEU ASP THR VAL LYS MET VAL TYR SEQRES 15 B 351 LEU ALA ARG ASP PRO ARG ASP VAL ALA VAL SER SER PHE SEQRES 16 B 351 HIS HIS ALA ARG LEU LEU TYR LEU LEU ASN LYS GLN SER SEQRES 17 B 351 ASN PHE LYS ASP PHE TRP GLU MET PHE HIS ARG GLY LEU SEQRES 18 B 351 TYR THR LEU THR PRO TYR PHE GLU HIS VAL LYS GLU ALA SEQRES 19 B 351 TRP ALA LYS ARG HIS ASP PRO ASN MET LEU PHE LEU PHE SEQRES 20 B 351 TYR GLU ASP TYR LEU LYS ASP LEU PRO GLY CYS ILE ALA SEQRES 21 B 351 ARG ILE ALA ASP PHE LEU GLY LYS LYS LEU SER GLU GLU SEQRES 22 B 351 GLN ILE GLN ARG LEU CYS GLU HIS LEU ASN PHE GLU LYS SEQRES 23 B 351 PHE LYS ASN ASN GLY ALA VAL ASN MET GLU ASP TYR ARG SEQRES 24 B 351 GLU ILE GLY ILE LEU ALA ASP GLY GLU HIS PHE ILE ARG SEQRES 25 B 351 LYS GLY LYS ALA GLY CYS TRP ARG ASP TYR PHE ASP GLU SEQRES 26 B 351 GLU MET THR LYS GLN ALA GLU LYS TRP ILE LYS ASP ASN SEQRES 27 B 351 LEU LYS ASP THR ASP LEU ARG TYR PRO ASN MET GLU LEU HET HG A 451 2 HET HG A 452 1 HET HG A 453 1 HET CA A 402 1 HET A3P A 400 27 HET RTL A 401 21 HET HG B 551 2 HET HG B 552 1 HET HG B 553 1 HET CA B 502 1 HET A3P B 500 27 HET RTL B 501 21 HETNAM HG MERCURY (II) ION HETNAM CA CALCIUM ION HETNAM A3P ADENOSINE-3'-5'-DIPHOSPHATE HETNAM RTL RETINOL FORMUL 3 HG 6(HG 2+) FORMUL 6 CA 2(CA 2+) FORMUL 7 A3P 2(C10 H15 N5 O10 P2) FORMUL 8 RTL 2(C20 H30 O) FORMUL 15 HOH *273(H2 O) HELIX 1 1 ASN A 17 ALA A 26 1 10 HELIX 2 2 TYR A 49 MET A 59 1 11 HELIX 3 3 GLY A 75 ASN A 88 1 14 HELIX 4 4 GLU A 93 THR A 97 5 5 HELIX 5 5 TYR A 98 TYR A 103 1 6 HELIX 6 6 ASP A 107 TYR A 112 5 6 HELIX 7 7 ASP A 113 GLN A 117 5 5 HELIX 8 8 LYS A 116 TYR A 120 5 5 HELIX 9 9 ASN A 126 LEU A 130 5 5 HELIX 10 10 ASP A 131 SER A 142 1 12 HELIX 11 11 PRO A 145 VAL A 153 1 9 HELIX 12 12 PRO A 166 MET A 170 5 5 HELIX 13 13 ASN A 173 THR A 177 5 5 HELIX 14 14 ASP A 186 LEU A 201 1 16 HELIX 15 15 ASN A 209 ARG A 219 1 11 HELIX 16 16 PRO A 226 ALA A 236 1 11 HELIX 17 17 TYR A 248 LEU A 255 1 8 HELIX 18 18 ASP A 254 LEU A 266 1 13 HELIX 19 19 SER A 271 LEU A 282 1 12 HELIX 20 20 ASN A 283 ASN A 289 1 7 HELIX 21 21 MET A 295 ARG A 299 5 5 HELIX 22 22 GLY A 317 TYR A 322 5 6 HELIX 23 23 ASP A 324 LEU A 339 1 16 HELIX 24 24 ASN B 17 ALA B 26 1 10 HELIX 25 25 TYR B 49 MET B 59 1 11 HELIX 26 26 GLY B 75 ASN B 88 1 14 HELIX 27 27 GLU B 93 THR B 97 5 5 HELIX 28 28 TYR B 98 TYR B 103 1 6 HELIX 29 29 ASP B 107 TYR B 112 5 6 HELIX 30 30 ASP B 113 GLN B 117 5 5 HELIX 31 31 LYS B 116 TYR B 120 5 5 HELIX 32 32 ASN B 126 LEU B 130 5 5 HELIX 33 33 ASP B 131 SER B 142 1 12 HELIX 34 34 PRO B 145 VAL B 153 1 9 HELIX 35 35 PRO B 166 MET B 170 5 5 HELIX 36 36 ASN B 173 THR B 177 5 5 HELIX 37 37 ASP B 186 LEU B 201 1 16 HELIX 38 38 ASN B 209 ARG B 219 1 11 HELIX 39 39 PRO B 226 ALA B 236 1 11 HELIX 40 40 TYR B 248 LEU B 255 1 8 HELIX 41 41 ASP B 254 LEU B 266 1 13 HELIX 42 42 SER B 271 LEU B 282 1 12 HELIX 43 43 ASN B 283 ASN B 289 1 7 HELIX 44 44 MET B 295 ARG B 299 5 5 HELIX 45 45 GLY B 317 TYR B 322 5 6 HELIX 46 46 ASP B 324 LEU B 339 1 16 SHEET 1 A 3 PHE A 13 ARG A 14 0 SHEET 2 A 3 TYR A 35 LEU A 38 -1 N LYS A 37 O ARG A 14 SHEET 3 A 3 TYR A 43 TYR A 46 -1 N TYR A 43 O LEU A 38 SHEET 1 B 5 ILE A 104 TYR A 105 0 SHEET 2 B 5 PHE A 160 THR A 163 1 O PHE A 160 N ILE A 104 SHEET 3 B 5 VAL A 66 SER A 70 1 O VAL A 66 N VAL A 161 SHEET 4 B 5 LYS A 179 ALA A 184 1 O LYS A 179 N PHE A 67 SHEET 5 B 5 MET A 243 PHE A 247 1 N LEU A 244 O MET A 180 SHEET 1 C 3 PHE B 13 ARG B 14 0 SHEET 2 C 3 TYR B 35 LEU B 38 -1 N LYS B 37 O ARG B 14 SHEET 3 C 3 TYR B 43 TYR B 46 -1 N TYR B 43 O LEU B 38 SHEET 1 D 5 ILE B 104 TYR B 105 0 SHEET 2 D 5 PHE B 160 THR B 163 1 O PHE B 160 N ILE B 104 SHEET 3 D 5 VAL B 66 SER B 70 1 O VAL B 66 N VAL B 161 SHEET 4 D 5 LYS B 179 ALA B 184 1 O LYS B 179 N PHE B 67 SHEET 5 D 5 MET B 243 PHE B 247 1 N LEU B 244 O MET B 180 LINK O GLU A 118 CA CA A 402 1555 1555 2.45 LINK OD1 ASN A 121 CA CA A 402 1555 1555 2.43 LINK OD1 ASP A 122 CA CA A 402 1555 1555 2.66 LINK O ASP A 254 HG A HG A 451 1555 1555 2.77 LINK SG CYS A 258 HG A HG A 451 1555 1555 2.42 LINK SG CYS A 258 HG B HG A 451 1555 1555 2.52 LINK N CYS A 258 HG A HG A 451 1555 1555 3.09 LINK SG CYS A 279 HG HG A 452 1555 1555 2.52 LINK N GLU A 280 HG HG A 452 1555 1555 3.49 LINK SG CYS A 318 HG HG A 453 1555 1555 2.65 LINK OD2 ASP A 321 HG HG A 453 1555 1555 3.30 LINK O GLU B 118 CA CA B 502 1555 1555 2.42 LINK OD1 ASN B 121 CA CA B 502 1555 1555 2.38 LINK OD1 ASP B 122 CA CA B 502 1555 1555 2.78 LINK OD2 ASP B 122 CA CA B 502 1555 1555 3.36 LINK O ASP B 254 HG A HG B 551 1555 1555 2.94 LINK SG CYS B 258 HG A HG B 551 1555 1555 2.39 LINK SG CYS B 258 HG B HG B 551 1555 1555 2.39 LINK N CYS B 258 HG A HG B 551 1555 1555 3.04 LINK SG CYS B 279 HG HG B 552 1555 1555 2.53 LINK SG CYS B 318 HG HG B 553 1555 1555 2.51 LINK OD2 ASP B 321 HG HG B 553 1555 1555 3.54 CISPEP 1 THR A 225 PRO A 226 0 0.90 CISPEP 2 THR B 225 PRO B 226 0 0.10 SITE 1 AC1 5 ASP A 250 ASP A 254 GLY A 257 CYS A 258 SITE 2 AC1 5 ARG A 261 SITE 1 AC2 2 CYS A 279 GLU A 280 SITE 1 AC3 2 CYS A 318 ASP A 321 SITE 1 AC4 3 GLU A 118 ASN A 121 ASP A 122 SITE 1 AC5 3 ASP B 250 ASP B 254 CYS B 258 SITE 1 AC6 1 CYS B 279 SITE 1 AC7 2 CYS B 318 ASP B 321 SITE 1 AC8 3 GLU B 118 ASN B 121 ASP B 122 SITE 1 AC9 20 ARG A 73 SER A 74 GLY A 75 THR A 76 SITE 2 AC9 20 THR A 77 MET A 78 ARG A 185 SER A 193 SITE 3 AC9 20 TYR A 248 LEU A 282 PHE A 284 PHE A 287 SITE 4 AC9 20 ARG A 312 LYS A 313 GLY A 314 HOH A 454 SITE 5 AC9 20 HOH A 477 HOH A 483 HOH A 511 HOH A 588 SITE 1 BC1 11 TYR A 105 TYR A 112 TYR A 120 LEU A 139 SITE 2 BC1 11 SER A 142 LYS A 162 HIS A 164 HIS A 197 SITE 3 BC1 11 MET A 295 PHE A 310 HOH A 588 SITE 1 BC2 20 ARG B 73 SER B 74 GLY B 75 THR B 76 SITE 2 BC2 20 THR B 77 MET B 78 ARG B 185 SER B 193 SITE 3 BC2 20 TYR B 248 LEU B 282 PHE B 284 PHE B 287 SITE 4 BC2 20 ARG B 312 LYS B 313 GLY B 314 HOH B 556 SITE 5 BC2 20 HOH B 573 HOH B 600 HOH B 683 HOH B 691 SITE 1 BC3 11 TYR B 105 TYR B 112 TYR B 120 SER B 142 SITE 2 BC3 11 LYS B 162 HIS B 164 HIS B 197 MET B 295 SITE 3 BC3 11 ILE B 303 PHE B 310 HOH B 691 CRYST1 79.429 66.183 83.336 90.00 108.89 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012590 0.000000 0.004308 0.00000 SCALE2 0.000000 0.015110 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012683 0.00000