HEADER HYDROLASE 18-AUG-00 1FMX TITLE STRUCTURE OF NATIVE PROTEINASE A IN THE SPACE GROUP P21 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SACCHAROPEPSIN; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: PROTEINASE A; COMPND 5 EC: 3.4.23.25 SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932 KEYWDS PROTEINASE A, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.GUSTCHINA,M.LI,L.H.PHYLIP,W.E.LEES,J.KAY,A.WLODAWER REVDAT 6 30-OCT-24 1FMX 1 REMARK HETSYN REVDAT 5 29-JUL-20 1FMX 1 COMPND REMARK HETNAM LINK REVDAT 5 2 1 SITE ATOM REVDAT 4 04-OCT-17 1FMX 1 REMARK REVDAT 3 13-JUL-11 1FMX 1 VERSN REVDAT 2 24-FEB-09 1FMX 1 VERSN REVDAT 1 31-JUL-02 1FMX 0 JRNL AUTH A.GUSTCHINA,M.LI,L.H.PHYLIP,W.E.LEES,J.KAY,A.WLODAWER JRNL TITL AN UNUSUAL ORIENTATION FOR TYR75 IN THE ACTIVE SITE OF THE JRNL TITL 2 ASPARTIC PROTEINASE FROM SACCHAROMYCES CEREVISIAE. JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 295 1020 2002 JRNL REFN ISSN 0006-291X JRNL PMID 12127998 JRNL DOI 10.1016/S0006-291X(02)00742-8 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH M.LI,L.PHYLIP,W.LEES,J.WINTHER,B.DUNN,A.WLODAWER,J.KAY, REMARK 1 AUTH 2 A.GUSTCHINA REMARK 1 TITL THE ASPARTIC PROTEINASE FROM A. CEREVISIAE FOLDS ITS OWN REMARK 1 TITL 2 INHIBITOR INTO A HELIX REMARK 1 REF NAT.STRUCT.BIOL. V. 7 113 2000 REMARK 1 REFN ISSN 1072-8368 REMARK 1 DOI 10.1038/72378 REMARK 2 REMARK 2 RESOLUTION. 2.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 1.0 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 24.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : 1.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 2089705.790 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 91.3 REMARK 3 NUMBER OF REFLECTIONS : 21354 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.205 REMARK 3 FREE R VALUE : 0.279 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 1038 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.009 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.76 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 68.00 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 2518 REMARK 3 BIN R VALUE (WORKING SET) : 0.2940 REMARK 3 BIN FREE R VALUE : 0.3800 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 4.90 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 129 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.033 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4996 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 95 REMARK 3 SOLVENT ATOMS : 197 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 54.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -4.66000 REMARK 3 B22 (A**2) : 6.86000 REMARK 3 B33 (A**2) : -2.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 10.18000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.30 REMARK 3 ESD FROM SIGMAA (A) : 0.36 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.44 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.54 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.014 REMARK 3 BOND ANGLES (DEGREES) : 2.000 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.60 REMARK 3 IMPROPER ANGLES (DEGREES) : 1.330 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.27 REMARK 3 BSOL : 60.63 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : CARBOHYDRATE.PARAM REMARK 3 PARAMETER FILE 3 : WATER.PARAM REMARK 3 PARAMETER FILE 4 : ION.PARAM REMARK 3 PARAMETER FILE 5 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 3 : WATER.TOP REMARK 3 TOPOLOGY FILE 4 : ION.TOP REMARK 3 TOPOLOGY FILE 5 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FMX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 08-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011724. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-FEB-00 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X9B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : CCD REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 22963 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.600 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 3.300 REMARK 200 R MERGE (I) : 0.08600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.80 REMARK 200 R MERGE FOR SHELL (I) : 0.56200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.68 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG 1500, AMMONIUM SULFATE, PH 5.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 24.53700 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 77 REMARK 465 THR A 78 REMARK 465 GLY A 79 REMARK 465 SER A 80 REMARK 465 GLY B 77 REMARK 465 THR B 78 REMARK 465 GLY B 79 REMARK 465 SER B 80 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 TRP A 244 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP A 244 CZ3 CH2 REMARK 470 TRP B 244 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 470 TRP B 244 CZ3 CH2 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ASP B 162 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 THR A 106 N CG2 REMARK 480 SER A 107 CB OG REMARK 480 PHE A 113 CG CD1 CE1 CZ REMARK 480 ALA A 114 CB REMARK 480 PHE A 115 CG CD2 CE2 CZ REMARK 480 LYS A 133 CE NZ REMARK 480 GLU A 164 N CA CB CG CD OE1 OE2 REMARK 480 LYS A 178 NZ REMARK 480 LYS A 180 CE NZ REMARK 480 GLU A 209 CG CD OE1 OE2 REMARK 480 GLU A 211 CG CD OE1 OE2 REMARK 480 SER A 212 OG REMARK 480 GLU A 237 CG REMARK 480 LYS A 241 CD CE NZ REMARK 480 THR A 245 N C O OG1 CG2 REMARK 480 GLY A 246 C O REMARK 480 ASN A 253 ND2 REMARK 480 ILE A 262 CD1 REMARK 480 GLU A 296 CD OE1 OE2 REMARK 480 LYS A 327 CD REMARK 480 GLU B 71 CD OE1 OE2 REMARK 480 LEU B 111 CD1 CD2 REMARK 480 THR B 112 OG1 REMARK 480 LYS B 133 CE NZ REMARK 480 LYS B 161 C CE NZ REMARK 480 THR B 163 OG1 CG2 REMARK 480 GLU B 164 CB CG CD OE1 OE2 REMARK 480 ASN B 165 ND2 REMARK 480 LYS B 178 NZ REMARK 480 LYS B 180 CE NZ REMARK 480 GLU B 209 CG CD OE1 OE2 REMARK 480 GLU B 211 CG CD OE1 OE2 REMARK 480 SER B 212 OG REMARK 480 GLU B 237 CG REMARK 480 LYS B 241 CD CE NZ REMARK 480 THR B 245 OG1 CG2 REMARK 480 GLN B 247 CG CD OE1 NE2 REMARK 480 ASP B 251 CB CG OD1 OD2 REMARK 480 ASN B 253 ND2 REMARK 480 ILE B 262 CD1 REMARK 480 GLU B 296 CD OE1 OE2 REMARK 480 LYS B 327 CD REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO B 109 C - N - CA ANGL. DEV. = 10.0 DEGREES REMARK 500 ASP B 162 CA - C - N ANGL. DEV. = -23.0 DEGREES REMARK 500 CYS B 252 CA - CB - SG ANGL. DEV. = 7.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 44 -3.10 -57.29 REMARK 500 TYR A 65 157.43 -44.80 REMARK 500 ASN A 68 -47.52 -144.91 REMARK 500 ASP A 88 175.24 173.80 REMARK 500 PRO A 109 -102.36 -6.30 REMARK 500 LEU A 111 -97.92 -33.64 REMARK 500 GLU A 164 -66.91 -20.51 REMARK 500 ALA A 192 -57.04 -169.53 REMARK 500 LEU A 223 -165.16 -120.84 REMARK 500 THR A 245 -41.25 -139.76 REMARK 500 ASP A 251 109.71 -56.99 REMARK 500 ASN A 257 27.41 -77.68 REMARK 500 ASN B 12 8.20 50.52 REMARK 500 ASN B 68 -39.87 -148.52 REMARK 500 PRO B 109 -38.82 -35.79 REMARK 500 LEU B 111 -85.63 0.43 REMARK 500 THR B 112 -47.02 -25.68 REMARK 500 LYS B 133 38.24 35.41 REMARK 500 GLN B 144 43.21 -68.75 REMARK 500 ASP B 145 44.01 27.45 REMARK 500 ARG B 151 148.67 -178.71 REMARK 500 SER B 160 30.34 -66.92 REMARK 500 ASP B 162 83.14 -23.32 REMARK 500 THR B 163 124.79 19.16 REMARK 500 ASN B 165 -6.47 129.71 REMARK 500 GLU B 176 -22.94 -33.54 REMARK 500 PHE B 179 141.81 -175.89 REMARK 500 ALA B 192 -77.54 -162.48 REMARK 500 ASN B 257 34.09 -86.02 REMARK 500 VAL B 281 63.24 -115.35 REMARK 500 SER B 282 99.92 69.27 REMARK 500 TYR B 316 78.13 -115.86 REMARK 500 ASN B 321 49.68 26.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 193 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 NAG C 2 REMARK 615 BMA C 3 REMARK 615 NAG A 333 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FMU RELATED DB: PDB REMARK 900 1FMU CONTAINS THE SAME PROTEIN IN ANOTHER SPACE GROUP. DBREF 1FMX A 1 329 UNP P07267 CARP_YEAST 77 405 DBREF 1FMX B 1 329 UNP P07267 CARP_YEAST 77 405 SEQRES 1 A 329 GLY GLY HIS ASP VAL PRO LEU THR ASN TYR LEU ASN ALA SEQRES 2 A 329 GLN TYR TYR THR ASP ILE THR LEU GLY THR PRO PRO GLN SEQRES 3 A 329 ASN PHE LYS VAL ILE LEU ASP THR GLY SER SER ASN LEU SEQRES 4 A 329 TRP VAL PRO SER ASN GLU CYS GLY SER LEU ALA CYS PHE SEQRES 5 A 329 LEU HIS SER LYS TYR ASP HIS GLU ALA SER SER SER TYR SEQRES 6 A 329 LYS ALA ASN GLY THR GLU PHE ALA ILE GLN TYR GLY THR SEQRES 7 A 329 GLY SER LEU GLU GLY TYR ILE SER GLN ASP THR LEU SER SEQRES 8 A 329 ILE GLY ASP LEU THR ILE PRO LYS GLN ASP PHE ALA GLU SEQRES 9 A 329 ALA THR SER GLU PRO GLY LEU THR PHE ALA PHE GLY LYS SEQRES 10 A 329 PHE ASP GLY ILE LEU GLY LEU GLY TYR ASP THR ILE SER SEQRES 11 A 329 VAL ASP LYS VAL VAL PRO PRO PHE TYR ASN ALA ILE GLN SEQRES 12 A 329 GLN ASP LEU LEU ASP GLU LYS ARG PHE ALA PHE TYR LEU SEQRES 13 A 329 GLY ASP THR SER LYS ASP THR GLU ASN GLY GLY GLU ALA SEQRES 14 A 329 THR PHE GLY GLY ILE ASP GLU SER LYS PHE LYS GLY ASP SEQRES 15 A 329 ILE THR TRP LEU PRO VAL ARG ARG LYS ALA TYR TRP GLU SEQRES 16 A 329 VAL LYS PHE GLU GLY ILE GLY LEU GLY ASP GLU TYR ALA SEQRES 17 A 329 GLU LEU GLU SER HIS GLY ALA ALA ILE ASP THR GLY THR SEQRES 18 A 329 SER LEU ILE THR LEU PRO SER GLY LEU ALA GLU MET ILE SEQRES 19 A 329 ASN ALA GLU ILE GLY ALA LYS LYS GLY TRP THR GLY GLN SEQRES 20 A 329 TYR THR LEU ASP CYS ASN THR ARG ASP ASN LEU PRO ASP SEQRES 21 A 329 LEU ILE PHE ASN PHE ASN GLY TYR ASN PHE THR ILE GLY SEQRES 22 A 329 PRO TYR ASP TYR THR LEU GLU VAL SER GLY SER CYS ILE SEQRES 23 A 329 SER ALA ILE THR PRO MET ASP PHE PRO GLU PRO VAL GLY SEQRES 24 A 329 PRO LEU ALA ILE VAL GLY ASP ALA PHE LEU ARG LYS TYR SEQRES 25 A 329 TYR SER ILE TYR ASP LEU GLY ASN ASN ALA VAL GLY LEU SEQRES 26 A 329 ALA LYS ALA ILE SEQRES 1 B 329 GLY GLY HIS ASP VAL PRO LEU THR ASN TYR LEU ASN ALA SEQRES 2 B 329 GLN TYR TYR THR ASP ILE THR LEU GLY THR PRO PRO GLN SEQRES 3 B 329 ASN PHE LYS VAL ILE LEU ASP THR GLY SER SER ASN LEU SEQRES 4 B 329 TRP VAL PRO SER ASN GLU CYS GLY SER LEU ALA CYS PHE SEQRES 5 B 329 LEU HIS SER LYS TYR ASP HIS GLU ALA SER SER SER TYR SEQRES 6 B 329 LYS ALA ASN GLY THR GLU PHE ALA ILE GLN TYR GLY THR SEQRES 7 B 329 GLY SER LEU GLU GLY TYR ILE SER GLN ASP THR LEU SER SEQRES 8 B 329 ILE GLY ASP LEU THR ILE PRO LYS GLN ASP PHE ALA GLU SEQRES 9 B 329 ALA THR SER GLU PRO GLY LEU THR PHE ALA PHE GLY LYS SEQRES 10 B 329 PHE ASP GLY ILE LEU GLY LEU GLY TYR ASP THR ILE SER SEQRES 11 B 329 VAL ASP LYS VAL VAL PRO PRO PHE TYR ASN ALA ILE GLN SEQRES 12 B 329 GLN ASP LEU LEU ASP GLU LYS ARG PHE ALA PHE TYR LEU SEQRES 13 B 329 GLY ASP THR SER LYS ASP THR GLU ASN GLY GLY GLU ALA SEQRES 14 B 329 THR PHE GLY GLY ILE ASP GLU SER LYS PHE LYS GLY ASP SEQRES 15 B 329 ILE THR TRP LEU PRO VAL ARG ARG LYS ALA TYR TRP GLU SEQRES 16 B 329 VAL LYS PHE GLU GLY ILE GLY LEU GLY ASP GLU TYR ALA SEQRES 17 B 329 GLU LEU GLU SER HIS GLY ALA ALA ILE ASP THR GLY THR SEQRES 18 B 329 SER LEU ILE THR LEU PRO SER GLY LEU ALA GLU MET ILE SEQRES 19 B 329 ASN ALA GLU ILE GLY ALA LYS LYS GLY TRP THR GLY GLN SEQRES 20 B 329 TYR THR LEU ASP CYS ASN THR ARG ASP ASN LEU PRO ASP SEQRES 21 B 329 LEU ILE PHE ASN PHE ASN GLY TYR ASN PHE THR ILE GLY SEQRES 22 B 329 PRO TYR ASP TYR THR LEU GLU VAL SER GLY SER CYS ILE SEQRES 23 B 329 SER ALA ILE THR PRO MET ASP PHE PRO GLU PRO VAL GLY SEQRES 24 B 329 PRO LEU ALA ILE VAL GLY ASP ALA PHE LEU ARG LYS TYR SEQRES 25 B 329 TYR SER ILE TYR ASP LEU GLY ASN ASN ALA VAL GLY LEU SEQRES 26 B 329 ALA LYS ALA ILE MODRES 1FMX ASN B 269 ASN GLYCOSYLATION SITE MODRES 1FMX ASN B 68 ASN GLYCOSYLATION SITE MODRES 1FMX ASN A 269 ASN GLYCOSYLATION SITE MODRES 1FMX ASN A 68 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET NAG A 333 14 HET NAG B 332 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 6(C8 H15 N O6) FORMUL 3 BMA C6 H12 O6 FORMUL 7 HOH *197(H2 O) HELIX 1 1 SER A 48 LEU A 53 1 6 HELIX 2 2 ASP A 58 SER A 62 5 5 HELIX 3 3 GLY A 110 GLY A 116 1 7 HELIX 4 4 TYR A 126 SER A 130 5 5 HELIX 5 5 SER A 130 VAL A 134 5 5 HELIX 6 6 PRO A 136 GLN A 144 1 9 HELIX 7 7 ASP A 175 SER A 177 5 3 HELIX 8 8 PRO A 227 GLY A 239 1 13 HELIX 9 9 ASP A 251 LEU A 258 5 8 HELIX 10 10 GLY A 273 TYR A 277 1 5 HELIX 11 11 GLY A 305 ARG A 310 1 6 HELIX 12 12 SER B 48 HIS B 54 1 7 HELIX 13 13 ASP B 58 SER B 62 5 5 HELIX 14 14 GLY B 110 PHE B 115 1 6 HELIX 15 15 TYR B 126 SER B 130 5 5 HELIX 16 16 SER B 130 VAL B 134 5 5 HELIX 17 17 PRO B 136 GLN B 144 1 9 HELIX 18 18 ASP B 175 LYS B 178 5 4 HELIX 19 19 PRO B 227 ILE B 238 1 12 HELIX 20 20 ASP B 251 LEU B 258 5 8 HELIX 21 21 GLY B 273 TYR B 277 1 5 HELIX 22 22 GLY B 305 ARG B 310 1 6 SHEET 1 A 6 HIS A 3 PRO A 6 0 SHEET 2 A 6 GLY A 167 PHE A 171 -1 N ALA A 169 O VAL A 5 SHEET 3 A 6 ARG A 151 LEU A 156 -1 O ALA A 153 N THR A 170 SHEET 4 A 6 TYR A 312 ASP A 317 -1 O SER A 314 N PHE A 154 SHEET 5 A 6 ALA A 322 ALA A 328 -1 O ALA A 322 N ASP A 317 SHEET 6 A 6 PHE A 179 PRO A 187 -1 N LYS A 180 O LYS A 327 SHEET 1 B10 THR A 8 TYR A 10 0 SHEET 2 B10 GLN A 14 LEU A 21 -1 O GLN A 14 N TYR A 10 SHEET 3 B10 GLN A 26 ASP A 33 -1 N GLN A 26 O LEU A 21 SHEET 4 B10 GLY A 120 GLY A 123 1 O GLY A 120 N ILE A 31 SHEET 5 B10 LEU A 39 PRO A 42 -1 N TRP A 40 O ILE A 121 SHEET 6 B10 LEU A 95 SER A 107 1 O ALA A 103 N VAL A 41 SHEET 7 B10 GLU A 82 ILE A 92 -1 O GLU A 82 N SER A 107 SHEET 8 B10 LYS A 66 ALA A 73 -1 O LYS A 66 N GLN A 87 SHEET 9 B10 GLU A 82 ILE A 92 -1 N GLY A 83 O PHE A 72 SHEET 10 B10 GLN A 14 LEU A 21 -1 N THR A 20 O SER A 91 SHEET 1 C 7 TYR A 268 ILE A 272 0 SHEET 2 C 7 LEU A 261 PHE A 265 -1 N LEU A 261 O ILE A 272 SHEET 3 C 7 GLU A 195 LEU A 203 -1 N GLU A 199 O ASN A 264 SHEET 4 C 7 ALA A 208 ILE A 217 -1 O ALA A 208 N ILE A 201 SHEET 5 C 7 LEU A 301 VAL A 304 1 O ALA A 302 N ALA A 216 SHEET 6 C 7 ILE A 224 LEU A 226 -1 N THR A 225 O ILE A 303 SHEET 7 C 7 ILE A 289 PRO A 291 1 O THR A 290 N LEU A 226 SHEET 1 D 4 LYS A 241 LYS A 242 0 SHEET 2 D 4 TYR A 248 LEU A 250 -1 O THR A 249 N LYS A 241 SHEET 3 D 4 SER A 284 SER A 287 -1 O CYS A 285 N LEU A 250 SHEET 4 D 4 THR A 278 VAL A 281 -1 O LEU A 279 N ILE A 286 SHEET 1 E15 THR B 184 PRO B 187 0 SHEET 2 E15 ALA B 322 LYS B 327 -1 N VAL B 323 O LEU B 186 SHEET 3 E15 TYR B 312 ASP B 317 -1 N TYR B 313 O ALA B 326 SHEET 4 E15 ARG B 151 LEU B 156 -1 O PHE B 152 N TYR B 316 SHEET 5 E15 GLY B 167 PHE B 171 -1 N GLU B 168 O TYR B 155 SHEET 6 E15 HIS B 3 TYR B 10 -1 N HIS B 3 O PHE B 171 SHEET 7 E15 GLN B 14 LEU B 21 -1 O GLN B 14 N TYR B 10 SHEET 8 E15 GLU B 82 ILE B 92 -1 N SER B 91 O THR B 20 SHEET 9 E15 LYS B 66 ALA B 73 -1 O LYS B 66 N GLN B 87 SHEET 10 E15 GLU B 82 ILE B 92 -1 O GLY B 83 N PHE B 72 SHEET 11 E15 LEU B 95 SER B 107 -1 O LEU B 95 N ILE B 92 SHEET 12 E15 LEU B 39 PRO B 42 1 O LEU B 39 N ALA B 103 SHEET 13 E15 GLY B 120 GLY B 123 -1 N ILE B 121 O TRP B 40 SHEET 14 E15 GLN B 26 ASP B 33 1 O LYS B 29 N GLY B 120 SHEET 15 E15 GLN B 14 LEU B 21 -1 N THR B 17 O VAL B 30 SHEET 1 F 9 ILE B 289 PRO B 291 0 SHEET 2 F 9 ILE B 224 LEU B 226 1 O ILE B 224 N THR B 290 SHEET 3 F 9 LEU B 301 VAL B 304 -1 N ILE B 303 O THR B 225 SHEET 4 F 9 GLY B 214 ILE B 217 1 O GLY B 214 N ALA B 302 SHEET 5 F 9 GLU B 195 LEU B 203 -1 N VAL B 196 O ALA B 215 SHEET 6 F 9 GLU B 206 GLU B 209 -1 O GLU B 206 N LEU B 203 SHEET 7 F 9 GLU B 195 LEU B 203 -1 N ILE B 201 O ALA B 208 SHEET 8 F 9 LEU B 261 PHE B 265 -1 N ILE B 262 O GLY B 202 SHEET 9 F 9 TYR B 268 ILE B 272 -1 O TYR B 268 N PHE B 265 SHEET 1 G 2 LYS B 241 LYS B 242 0 SHEET 2 G 2 TYR B 248 THR B 249 -1 O THR B 249 N LYS B 241 SHEET 1 H 2 THR B 278 GLU B 280 0 SHEET 2 H 2 CYS B 285 SER B 287 -1 N ILE B 286 O LEU B 279 SSBOND 1 CYS A 46 CYS A 51 1555 1555 2.04 SSBOND 2 CYS A 252 CYS A 285 1555 1555 2.03 SSBOND 3 CYS B 46 CYS B 51 1555 1555 2.02 SSBOND 4 CYS B 252 CYS B 285 1555 1555 2.01 LINK ND2 ASN A 68 C1 NAG C 1 1555 1555 1.46 LINK ND2 ASN A 269 C1 NAG A 333 1555 1555 1.46 LINK ND2 ASN B 68 C1 NAG D 1 1555 1555 1.45 LINK ND2 ASN B 269 C1 NAG B 332 1555 1555 1.44 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.39 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.38 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.40 CISPEP 1 THR A 23 PRO A 24 0 -1.74 CISPEP 2 GLU A 296 PRO A 297 0 0.67 CISPEP 3 GLY A 299 PRO A 300 0 -1.23 CISPEP 4 THR B 23 PRO B 24 0 -0.04 CISPEP 5 GLU B 296 PRO B 297 0 -2.94 CISPEP 6 GLY B 299 PRO B 300 0 0.08 CRYST1 82.964 49.074 94.685 90.00 96.50 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012053 0.000000 0.001372 0.00000 SCALE2 0.000000 0.020377 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010630 0.00000