HEADER IMMUNE SYSTEM 21-AUG-00 1FNE TITLE HISTOCOMPATIBILITY ANTIGEN COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN (MHC CLASS II I-EK, ALPHA CHAIN); COMPND 3 CHAIN: A, C; COMPND 4 FRAGMENT: SOLUBLE ECTO-DOMAIN; COMPND 5 ENGINEERED: YES; COMPND 6 MOL_ID: 2; COMPND 7 MOLECULE: PROTEIN (MHC CLASS II I-EK, BETA CHAIN); COMPND 8 CHAIN: B, D; COMPND 9 FRAGMENT: SOLUBLE ECTO-DOMAIN WITH COVALENTLY ATTACHED HB PEPTIDE; COMPND 10 ENGINEERED: YES; COMPND 11 MUTATION: YES; COMPND 12 OTHER_DETAILS: WITH COVALENTLY BOUND HB(D73) PEPTIDE SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 MOL_ID: 2; SOURCE 9 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 10 ORGANISM_COMMON: HOUSE MOUSE; SOURCE 11 ORGANISM_TAXID: 10090; SOURCE 12 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 13 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 14 EXPRESSION_SYSTEM_TAXID: 7108 KEYWDS HISTOCOMPATIBILITY ANTIGEN, MHC, IMMUNE SYSTEM EXPDTA X-RAY DIFFRACTION AUTHOR M.J.MILEY,C.A.NELSON,D.H.FREMONT REVDAT 8 09-AUG-23 1FNE 1 REMARK HETSYN REVDAT 7 29-JUL-20 1FNE 1 COMPND REMARK SEQADV HETNAM REVDAT 7 2 1 SITE REVDAT 6 14-MAR-18 1FNE 1 SEQADV REVDAT 5 23-AUG-17 1FNE 1 SOURCE REMARK REVDAT 4 13-JUL-11 1FNE 1 VERSN REVDAT 3 24-FEB-09 1FNE 1 VERSN REVDAT 2 01-APR-03 1FNE 1 JRNL REVDAT 1 07-MAR-01 1FNE 0 JRNL AUTH G.J.KERSH,M.J.MILEY,C.A.NELSON,A.GRAKOUI,S.HORVATH, JRNL AUTH 2 D.L.DONERMEYER,J.KAPPLER,P.M.ALLEN,D.H.FREMONT JRNL TITL STRUCTURAL AND FUNCTIONAL CONSEQUENCES OF ALTERING A PEPTIDE JRNL TITL 2 MHC ANCHOR RESIDUE. JRNL REF J.IMMUNOL. V. 166 3345 2001 JRNL REFN ISSN 0022-1767 JRNL PMID 11207290 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.97 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 845534.750 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 92.8 REMARK 3 NUMBER OF REFLECTIONS : 70818 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.231 REMARK 3 FREE R VALUE : 0.270 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 3604 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.004 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 12 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.96 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 76.90 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 4616 REMARK 3 BIN R VALUE (WORKING SET) : 0.3600 REMARK 3 BIN FREE R VALUE : 0.4200 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 5.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 243 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.027 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 6420 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 84 REMARK 3 SOLVENT ATOMS : 507 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 29.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 41.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.84000 REMARK 3 B22 (A**2) : 10.91000 REMARK 3 B33 (A**2) : -5.06000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -4.32000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.27 REMARK 3 ESD FROM SIGMAA (A) : 0.34 REMARK 3 LOW RESOLUTION CUTOFF (A) : 5.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.38 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.007 REMARK 3 BOND ANGLES (DEGREES) : 1.400 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 25.70 REMARK 3 IMPROPER ANGLES (DEGREES) : 0.830 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 1.410 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 2.300 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 1.870 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 2.780 ; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.36 REMARK 3 BSOL : 58.25 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PA REMARK 3 PARAMETER FILE 2 : WATER_REP.PARA REMARK 3 PARAMETER FILE 3 : CARBOHYDRATE.P REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : CARBOHYDRATE.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FNE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 28-AUG-00. REMARK 100 THE DEPOSITION ID IS D_1000011737. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.8 REMARK 200 NUMBER OF CRYSTALS USED : 3 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0332 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 72521 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 100.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.4 REMARK 200 DATA REDUNDANCY : 5.010 REMARK 200 R MERGE (I) : 0.11400 REMARK 200 R SYM (I) : 0.11400 REMARK 200 FOR THE DATA SET : 13.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.96 REMARK 200 COMPLETENESS FOR SHELL (%) : 92.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.30100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: PDB ENTRY 1IEA REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.78 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.55 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15% PEG 4000 15% 2-PROPANOL 300MM REMARK 280 -500MM AMMONIUM ACETATE 100MM CITRATE PH 4.8, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.45000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.42650 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.45000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.42650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7020 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19310 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 7110 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19300 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -29.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: OCTAMERIC REMARK 350 SOFTWARE USED: PQS REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 146.90000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 THIS ENTRY CONTAINS COORDINATES FOR THE EXTRACELLULAR REMARK 400 DOMAINS OF THE MURINE MHC CLASS II MOLECULE I-EK WITH A REMARK 400 MODIFIED PEPTIDE FROM MURINE HEMOGLOBIN (64 - 76) COVALENTLY REMARK 400 ATTACHED TO THE I-EK BETA CHAIN VIA A POLYPEPTIDE LINKER. REMARK 400 NO ATTEMPT WAS MADE TO MODEL FIVE RESIDUES AMINO TERMINAL REMARK 400 TO THE BETA CHAIN OR TEN RESIDUES CARBOXY TERMINAL TO REMARK 400 EITHER THE ALPHA OR BETA CHAINS. RESIDUES 105-113 IN THE REMARK 400 B AND D CHAINS HAVE OCCUPANCIES SET TO ZERO DUE TO LACK REMARK 400 OF COHERENT ELECTRON DENSITY.THERE ARE TWO HETERODIMERS REMARK 400 IN THE ASYMMETRIC UNIT RELATED BY AN APPROXIMATE REMARK 400 TWO-FOLD AXIS. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 183 REMARK 465 THR A 184 REMARK 465 LEU A 185 REMARK 465 LEU A 186 REMARK 465 PRO A 187 REMARK 465 GLU A 188 REMARK 465 THR A 189 REMARK 465 LYS A 190 REMARK 465 GLU A 191 REMARK 465 ASN A 192 REMARK 465 GLY B 5N REMARK 465 LYS B 189 REMARK 465 ALA B 190 REMARK 465 GLN B 191 REMARK 465 SER B 192 REMARK 465 THR B 193 REMARK 465 SER B 194 REMARK 465 ALA B 195 REMARK 465 GLN B 196 REMARK 465 ASN B 197 REMARK 465 LYS B 198 REMARK 465 LYS C 183 REMARK 465 THR C 184 REMARK 465 LEU C 185 REMARK 465 LEU C 186 REMARK 465 PRO C 187 REMARK 465 GLU C 188 REMARK 465 THR C 189 REMARK 465 LYS C 190 REMARK 465 GLU C 191 REMARK 465 ASN C 192 REMARK 465 GLY D 5N REMARK 465 LYS D 189 REMARK 465 ALA D 190 REMARK 465 GLN D 191 REMARK 465 SER D 192 REMARK 465 THR D 193 REMARK 465 SER D 194 REMARK 465 ALA D 195 REMARK 465 GLN D 196 REMARK 465 ASN D 197 REMARK 465 LYS D 198 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 LYS B 105 REMARK 475 THR B 106 REMARK 475 GLN B 107 REMARK 475 PRO B 108 REMARK 475 LEU B 109 REMARK 475 GLU B 110 REMARK 475 HIS B 111 REMARK 475 HIS B 112 REMARK 475 ASN B 113 REMARK 475 LYS D 105 REMARK 475 THR D 106 REMARK 475 GLN D 107 REMARK 475 PRO D 108 REMARK 475 LEU D 109 REMARK 475 GLU D 110 REMARK 475 HIS D 111 REMARK 475 HIS D 112 REMARK 475 ASN D 113 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASP C 25 O HOH C 644 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 635 O HOH C 635 2655 1.12 REMARK 500 O HOH C 657 O HOH C 657 2655 1.34 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 142 -145.59 -94.28 REMARK 500 ASN B 19 71.06 -173.69 REMARK 500 ASN B 33 -119.69 60.64 REMARK 500 PHE B 89 -24.19 -143.04 REMARK 500 LYS B 105 -129.81 -164.32 REMARK 500 THR B 106 21.03 -148.35 REMARK 500 GLN B 107 -78.70 88.64 REMARK 500 LEU B 109 -30.77 -38.16 REMARK 500 GLU B 110 -97.16 49.09 REMARK 500 HIS B 111 -166.57 -75.89 REMARK 500 PRO B 165 162.40 -41.53 REMARK 500 GLN B 166 105.70 -165.67 REMARK 500 SER B 167 -75.81 -18.69 REMARK 500 GLU B 169 99.81 -68.64 REMARK 500 PRO B 178 2.73 -66.61 REMARK 500 PRO B 183 158.40 -49.11 REMARK 500 SER C 113 143.36 -177.17 REMARK 500 ASP C 142 -150.51 -95.03 REMARK 500 VAL D 7L 93.26 -65.38 REMARK 500 ASN D 19 80.41 -169.92 REMARK 500 ASN D 33 -118.18 57.02 REMARK 500 PHE D 89 -22.20 -143.94 REMARK 500 LYS D 105 143.54 177.35 REMARK 500 GLN D 107 -86.81 38.03 REMARK 500 GLU D 110 -60.76 72.26 REMARK 500 HIS D 111 -96.74 -112.62 REMARK 500 THR D 157 140.07 -171.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 NAG A 601 REMARK 610 NAG A 602 REMARK 610 NAG B 603 REMARK 610 NAG C 604 REMARK 610 NAG C 605 REMARK 610 NAG D 606 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1IEA RELATED DB: PDB REMARK 900 INITIAL I-EK/HB STRUCTURE REMARK 999 REMARK 999 SEQUENCE REMARK 999 RESIDUES (1L - 16L)IN CHAINS B & D FORM A POLYPEPTIDE LINKER REGION DBREF 1FNE A 1 192 UNP P04224 HA22_MOUSE 26 217 DBREF 1FNE B 5N 9P UNP P02089 HBB2_MOUSE 64 76 DBREF 1FNE B 4 198 GB AAA39594 199398 4 198 DBREF 1FNE C 1 192 UNP P04224 HA22_MOUSE 26 217 DBREF 1FNE D 5N 9P UNP P02089 HBB2_MOUSE 64 76 DBREF 1FNE D 4 198 GB AAA39594 199398 4 198 SEQADV 1FNE ASP B 6P UNP P02089 GLU 73 ENGINEERED MUTATION SEQADV 1FNE ASP D 6P UNP P02089 GLU 73 ENGINEERED MUTATION SEQRES 1 A 192 ILE LYS GLU GLU HIS THR ILE ILE GLN ALA GLU PHE TYR SEQRES 2 A 192 LEU LEU PRO ASP LYS ARG GLY GLU PHE MET PHE ASP PHE SEQRES 3 A 192 ASP GLY ASP GLU ILE PHE HIS VAL ASP ILE GLU LYS SER SEQRES 4 A 192 GLU THR ILE TRP ARG LEU GLU GLU PHE ALA LYS PHE ALA SEQRES 5 A 192 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 A 192 ASP LYS ALA ASN LEU ASP VAL MET LYS GLU ARG SER ASN SEQRES 7 A 192 ASN THR PRO ASP ALA ASN VAL ALA PRO GLU VAL THR VAL SEQRES 8 A 192 LEU SER ARG SER PRO VAL ASN LEU GLY GLU PRO ASN ILE SEQRES 9 A 192 LEU ILE CYS PHE ILE ASP LYS PHE SER PRO PRO VAL VAL SEQRES 10 A 192 ASN VAL THR TRP LEU ARG ASN GLY ARG PRO VAL THR GLU SEQRES 11 A 192 GLY VAL SER GLU THR VAL PHE LEU PRO ARG ASP ASP HIS SEQRES 12 A 192 LEU PHE ARG LYS PHE HIS TYR LEU THR PHE LEU PRO SER SEQRES 13 A 192 THR ASP ASP PHE TYR ASP CYS GLU VAL ASP HIS TRP GLY SEQRES 14 A 192 LEU GLU GLU PRO LEU ARG LYS HIS TRP GLU PHE GLU GLU SEQRES 15 A 192 LYS THR LEU LEU PRO GLU THR LYS GLU ASN SEQRES 1 B 224 GLY LYS LYS VAL ILE THR ALA PHE ASN ASP GLY LEU LYS SEQRES 2 B 224 GLY GLY GLY GLY SER LEU VAL GLY GLY GLY SER GLY GLY SEQRES 3 B 224 GLY GLY SER ARG PRO TRP PHE LEU GLU TYR CYS LYS SER SEQRES 4 B 224 GLU CYS HIS PHE TYR ASN GLY THR GLN ARG VAL ARG LEU SEQRES 5 B 224 LEU VAL ARG TYR PHE TYR ASN LEU GLU GLU ASN LEU ARG SEQRES 6 B 224 PHE ASP SER ASP VAL GLY GLU PHE ARG ALA VAL THR GLU SEQRES 7 B 224 LEU GLY ARG PRO ASP ALA GLU ASN TRP ASN SER GLN PRO SEQRES 8 B 224 GLU PHE LEU GLU GLN LYS ARG ALA GLU VAL ASP THR VAL SEQRES 9 B 224 CYS ARG HIS ASN TYR GLU ILE PHE ASP ASN PHE LEU VAL SEQRES 10 B 224 PRO ARG ARG VAL GLU PRO THR VAL THR VAL TYR PRO THR SEQRES 11 B 224 LYS THR GLN PRO LEU GLU HIS HIS ASN LEU LEU VAL CYS SEQRES 12 B 224 SER VAL SER ASP PHE TYR PRO GLY ASN ILE GLU VAL ARG SEQRES 13 B 224 TRP PHE ARG ASN GLY LYS GLU GLU LYS THR GLY ILE VAL SEQRES 14 B 224 SER THR GLY LEU VAL ARG ASN GLY ASP TRP THR PHE GLN SEQRES 15 B 224 THR LEU VAL MET LEU GLU THR VAL PRO GLN SER GLY GLU SEQRES 16 B 224 VAL TYR THR CYS GLN VAL GLU HIS PRO SER LEU THR ASP SEQRES 17 B 224 PRO VAL THR VAL GLU TRP LYS ALA GLN SER THR SER ALA SEQRES 18 B 224 GLN ASN LYS SEQRES 1 C 192 ILE LYS GLU GLU HIS THR ILE ILE GLN ALA GLU PHE TYR SEQRES 2 C 192 LEU LEU PRO ASP LYS ARG GLY GLU PHE MET PHE ASP PHE SEQRES 3 C 192 ASP GLY ASP GLU ILE PHE HIS VAL ASP ILE GLU LYS SER SEQRES 4 C 192 GLU THR ILE TRP ARG LEU GLU GLU PHE ALA LYS PHE ALA SEQRES 5 C 192 SER PHE GLU ALA GLN GLY ALA LEU ALA ASN ILE ALA VAL SEQRES 6 C 192 ASP LYS ALA ASN LEU ASP VAL MET LYS GLU ARG SER ASN SEQRES 7 C 192 ASN THR PRO ASP ALA ASN VAL ALA PRO GLU VAL THR VAL SEQRES 8 C 192 LEU SER ARG SER PRO VAL ASN LEU GLY GLU PRO ASN ILE SEQRES 9 C 192 LEU ILE CYS PHE ILE ASP LYS PHE SER PRO PRO VAL VAL SEQRES 10 C 192 ASN VAL THR TRP LEU ARG ASN GLY ARG PRO VAL THR GLU SEQRES 11 C 192 GLY VAL SER GLU THR VAL PHE LEU PRO ARG ASP ASP HIS SEQRES 12 C 192 LEU PHE ARG LYS PHE HIS TYR LEU THR PHE LEU PRO SER SEQRES 13 C 192 THR ASP ASP PHE TYR ASP CYS GLU VAL ASP HIS TRP GLY SEQRES 14 C 192 LEU GLU GLU PRO LEU ARG LYS HIS TRP GLU PHE GLU GLU SEQRES 15 C 192 LYS THR LEU LEU PRO GLU THR LYS GLU ASN SEQRES 1 D 224 GLY LYS LYS VAL ILE THR ALA PHE ASN ASP GLY LEU LYS SEQRES 2 D 224 GLY GLY GLY GLY SER LEU VAL GLY GLY GLY SER GLY GLY SEQRES 3 D 224 GLY GLY SER ARG PRO TRP PHE LEU GLU TYR CYS LYS SER SEQRES 4 D 224 GLU CYS HIS PHE TYR ASN GLY THR GLN ARG VAL ARG LEU SEQRES 5 D 224 LEU VAL ARG TYR PHE TYR ASN LEU GLU GLU ASN LEU ARG SEQRES 6 D 224 PHE ASP SER ASP VAL GLY GLU PHE ARG ALA VAL THR GLU SEQRES 7 D 224 LEU GLY ARG PRO ASP ALA GLU ASN TRP ASN SER GLN PRO SEQRES 8 D 224 GLU PHE LEU GLU GLN LYS ARG ALA GLU VAL ASP THR VAL SEQRES 9 D 224 CYS ARG HIS ASN TYR GLU ILE PHE ASP ASN PHE LEU VAL SEQRES 10 D 224 PRO ARG ARG VAL GLU PRO THR VAL THR VAL TYR PRO THR SEQRES 11 D 224 LYS THR GLN PRO LEU GLU HIS HIS ASN LEU LEU VAL CYS SEQRES 12 D 224 SER VAL SER ASP PHE TYR PRO GLY ASN ILE GLU VAL ARG SEQRES 13 D 224 TRP PHE ARG ASN GLY LYS GLU GLU LYS THR GLY ILE VAL SEQRES 14 D 224 SER THR GLY LEU VAL ARG ASN GLY ASP TRP THR PHE GLN SEQRES 15 D 224 THR LEU VAL MET LEU GLU THR VAL PRO GLN SER GLY GLU SEQRES 16 D 224 VAL TYR THR CYS GLN VAL GLU HIS PRO SER LEU THR ASP SEQRES 17 D 224 PRO VAL THR VAL GLU TRP LYS ALA GLN SER THR SER ALA SEQRES 18 D 224 GLN ASN LYS HET NAG A 601 14 HET NAG A 602 14 HET NAG B 603 14 HET NAG C 604 14 HET NAG C 605 14 HET NAG D 606 14 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE FORMUL 5 NAG 6(C8 H15 N O6) FORMUL 11 HOH *507(H2 O) HELIX 1 1 LEU A 45 PHE A 51 5 7 HELIX 2 2 GLU A 55 SER A 77 1 23 HELIX 3 3 ASN B 19 GLN B 22 5 4 HELIX 4 4 THR B 51 LEU B 53 5 3 HELIX 5 5 GLY B 54 SER B 63 1 10 HELIX 6 6 GLN B 64 VAL B 78 1 15 HELIX 7 7 VAL B 78 ASP B 87 1 10 HELIX 8 8 LEU C 45 LYS C 50 5 6 HELIX 9 9 GLU C 55 SER C 77 1 23 HELIX 10 10 GLY D 20 GLN D 22 5 3 HELIX 11 11 THR D 51 LEU D 53 5 3 HELIX 12 12 GLY D 54 ASN D 62 1 9 HELIX 13 13 GLN D 64 VAL D 78 1 15 HELIX 14 14 VAL D 78 ASP D 87 1 10 SHEET 1 A 8 GLU A 40 TRP A 43 0 SHEET 2 A 8 ASP A 29 ASP A 35 -1 O HIS A 33 N ILE A 42 SHEET 3 A 8 ARG A 19 PHE A 26 -1 O PHE A 22 N VAL A 34 SHEET 4 A 8 HIS A 5 LEU A 15 -1 N ILE A 8 O ASP A 25 SHEET 5 A 8 PHE B 7 PHE B 17 -1 O PHE B 7 N LEU A 15 SHEET 6 A 8 VAL B 24 TYR B 32 -1 O ARG B 25 N HIS B 16 SHEET 7 A 8 GLU B 35 ASP B 41 -1 O GLU B 35 N TYR B 32 SHEET 8 A 8 PHE B 47 ALA B 49 -1 N ARG B 48 O ARG B 39 SHEET 1 B 4 GLU A 88 SER A 93 0 SHEET 2 B 4 ASN A 103 PHE A 112 -1 N ILE A 106 O LEU A 92 SHEET 3 B 4 PHE A 145 PHE A 153 -1 N PHE A 145 O PHE A 112 SHEET 4 B 4 VAL A 132 GLU A 134 -1 O SER A 133 N TYR A 150 SHEET 1 C 4 GLU A 88 SER A 93 0 SHEET 2 C 4 ASN A 103 PHE A 112 -1 N ILE A 106 O LEU A 92 SHEET 3 C 4 PHE A 145 PHE A 153 -1 N PHE A 145 O PHE A 112 SHEET 4 C 4 LEU A 138 PRO A 139 -1 N LEU A 138 O ARG A 146 SHEET 1 D 4 ARG A 126 VAL A 128 0 SHEET 2 D 4 ASN A 118 ARG A 123 -1 O TRP A 121 N VAL A 128 SHEET 3 D 4 TYR A 161 ASP A 166 -1 O ASP A 162 N LEU A 122 SHEET 4 D 4 LEU A 174 TRP A 178 -1 N LEU A 174 O VAL A 165 SHEET 1 E 5 THR D 98 THR D 104 0 SHEET 2 E 5 LEU D 114 PHE D 122 -1 O LEU D 114 N THR D 104 SHEET 3 E 5 PHE D 155 GLU D 162 -1 N PHE D 155 O PHE D 122 SHEET 4 E 5 ILE D 142 SER D 144 -1 O VAL D 143 N MET D 160 SHEET 5 E 5 GLY B 4L LEU B 6L 1 O SER B 5L N SER D 144 SHEET 1 F 4 THR D 98 THR D 104 0 SHEET 2 F 4 LEU D 114 PHE D 122 -1 O LEU D 114 N THR D 104 SHEET 3 F 4 PHE D 155 GLU D 162 -1 N PHE D 155 O PHE D 122 SHEET 4 F 4 VAL D 148 ARG D 149 -1 N VAL D 148 O GLN D 156 SHEET 1 G 5 THR B 98 THR B 104 0 SHEET 2 G 5 LEU B 114 PHE B 122 -1 O LEU B 114 N THR B 104 SHEET 3 G 5 PHE B 155 GLU B 162 -1 N PHE B 155 O PHE B 122 SHEET 4 G 5 ILE B 142 SER B 144 -1 O VAL B 143 N MET B 160 SHEET 5 G 5 GLY D 4L LEU D 6L 1 O SER D 5L N SER B 144 SHEET 1 H 4 THR B 98 THR B 104 0 SHEET 2 H 4 LEU B 114 PHE B 122 -1 O LEU B 114 N THR B 104 SHEET 3 H 4 PHE B 155 GLU B 162 -1 N PHE B 155 O PHE B 122 SHEET 4 H 4 VAL B 148 ARG B 149 -1 N VAL B 148 O GLN B 156 SHEET 1 I 4 LYS B 136 GLU B 137 0 SHEET 2 I 4 GLU B 128 ARG B 133 -1 N ARG B 133 O LYS B 136 SHEET 3 I 4 TYR B 171 GLU B 176 -1 N THR B 172 O PHE B 132 SHEET 4 I 4 VAL B 184 TRP B 188 -1 O VAL B 184 N VAL B 175 SHEET 1 J 8 GLU C 40 TRP C 43 0 SHEET 2 J 8 ASP C 29 ASP C 35 -1 O HIS C 33 N ILE C 42 SHEET 3 J 8 ARG C 19 PHE C 26 -1 O PHE C 22 N VAL C 34 SHEET 4 J 8 HIS C 5 LEU C 15 -1 N ILE C 8 O ASP C 25 SHEET 5 J 8 PHE D 7 ASN D 19 -1 N PHE D 7 O LEU C 15 SHEET 6 J 8 ARG D 23 TYR D 32 -1 O ARG D 23 N TYR D 18 SHEET 7 J 8 GLU D 35 ASP D 41 -1 O GLU D 35 N TYR D 32 SHEET 8 J 8 PHE D 47 ALA D 49 -1 N ARG D 48 O ARG D 39 SHEET 1 K 2 ALA C 52 SER C 53 0 SHEET 2 K 2 LYS D 7N VAL D 8N 1 O LYS D 7N N SER C 53 SHEET 1 L 4 GLU C 88 SER C 93 0 SHEET 2 L 4 ASN C 103 PHE C 112 -1 N ILE C 106 O LEU C 92 SHEET 3 L 4 PHE C 145 PHE C 153 -1 N PHE C 145 O PHE C 112 SHEET 4 L 4 VAL C 132 GLU C 134 -1 O SER C 133 N TYR C 150 SHEET 1 M 4 GLU C 88 SER C 93 0 SHEET 2 M 4 ASN C 103 PHE C 112 -1 N ILE C 106 O LEU C 92 SHEET 3 M 4 PHE C 145 PHE C 153 -1 N PHE C 145 O PHE C 112 SHEET 4 M 4 LEU C 138 PRO C 139 -1 N LEU C 138 O ARG C 146 SHEET 1 N 4 ARG C 126 PRO C 127 0 SHEET 2 N 4 ASN C 118 ARG C 123 -1 N ARG C 123 O ARG C 126 SHEET 3 N 4 PHE C 160 ASP C 166 -1 O ASP C 162 N LEU C 122 SHEET 4 N 4 LEU C 174 GLU C 179 -1 N LEU C 174 O VAL C 165 SHEET 1 O 4 LYS D 136 GLU D 137 0 SHEET 2 O 4 GLU D 128 ARG D 133 -1 N ARG D 133 O LYS D 136 SHEET 3 O 4 TYR D 171 GLU D 176 -1 N THR D 172 O PHE D 132 SHEET 4 O 4 VAL D 184 TRP D 188 -1 O VAL D 184 N VAL D 175 SSBOND 1 CYS A 107 CYS A 163 1555 1555 2.03 SSBOND 2 CYS B 15 CYS B 79 1555 1555 2.05 SSBOND 3 CYS B 117 CYS B 173 1555 1555 2.03 SSBOND 4 CYS C 107 CYS C 163 1555 1555 2.03 SSBOND 5 CYS D 15 CYS D 79 1555 1555 2.04 SSBOND 6 CYS D 117 CYS D 173 1555 1555 2.02 CISPEP 1 LEU A 15 PRO A 16 0 0.00 CISPEP 2 SER A 113 PRO A 114 0 0.54 CISPEP 3 TYR B 123 PRO B 124 0 -0.08 CISPEP 4 LEU C 15 PRO C 16 0 0.05 CISPEP 5 SER C 113 PRO C 114 0 0.47 CISPEP 6 TYR D 123 PRO D 124 0 0.10 CRYST1 146.900 56.853 116.726 90.00 91.76 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006807 0.000000 0.000209 0.00000 SCALE2 0.000000 0.017589 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008571 0.00000