HEADER OXIDOREDUCTASE(NADP+(A),FERREDOXIN(A)) 21-JUN-90 1FNR OBSLTE 15-MAY-95 1FNR 1FNB TITLE ATOMIC STRUCTURE OF FERREDOXIN-/NADP==+==$ REDUCTASE: TITLE 2 PROTOTYPE FOR A STRUCTURALLY NOVEL FLAVOENZYME FAMILY COMPND MOL_ID: 1; COMPND 2 MOLECULE:; COMPND 3 CHAIN: NULL; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1 KEYWDS OXIDOREDUCTASE(NADP+(A),FERREDOXIN(A)) EXPDTA X-RAY DIFFRACTION AUTHOR P.A.KARPLUS,M.J.DANIELS,J.R.HERRIOTT REVDAT 2 15-MAY-95 1FNR 3 OBSLTE REVDAT 1 15-JUL-91 1FNR 0 JRNL AUTH P.A.KARPLUS,M.J.DANIELS,J.R.HERRIOTT JRNL TITL ATOMIC STRUCTURE OF FERREDOXIN-/NADP==+== JRNL TITL 2 REDUCTASE: PROTOTYPE FOR A STRUCTURALLY NOVEL JRNL TITL 3 FLAVOENZYME FAMILY JRNL REF SCIENCE V. 251 60 1991 JRNL REFN ASTM SCIEAS US ISSN 0036-8075 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH P.A.KARPLUS,K.A.WALSH,J.R.HERRIOTT REMARK 1 TITL AMINO ACID SEQUENCE OF SPINACH REMARK 1 TITL 2 FERREDOXIN:/NADP==+== OXIDOREDUCTASE REMARK 1 REF BIOCHEMISTRY V. 23 6576 1984 REMARK 1 REFN ASTM BICHAW US ISSN 0006-2960 REMARK 1 REFERENCE 2 REMARK 1 AUTH S.SHERIFF,J.R.HERRIOTT REMARK 1 TITL STRUCTURE OF FERREDOXIN-/NADP==+== OXIDOREDUCTASE REMARK 1 TITL 2 AND THE LOCATION OF THE /NADP BINDING SITE REMARK 1 REF J.MOL.BIOL. V. 145 441 1981 REMARK 1 REFN ASTM JMOBAK UK ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. NULL ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : NULL REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2352 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 53 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FNR COMPLIES WITH FORMAT V. 2.3, 09-JULY-1998 REMARK 5 REMARK 5 1FNR CORRECTION. THIS ENTRY IS OBSOLETE. 15-MAY-95. 1FNR REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 50.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.48 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 1/2+X,1/2+Y,Z REMARK 290 4555 1/2-X,1/2+Y,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.85000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.35000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.85000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 THIS ENTRY CONTAINS THE CRYSTALLOGRAPHIC ASYMMETRIC UNIT REMARK 300 WHICH CONSISTS OF 1 CHAIN(S). SEE REMARK 350 FOR REMARK 300 INFORMATION ON GENERATING THE BIOLOGICAL MOLECULE(S). REMARK 350 REMARK 350 GENERATING THE BIOMOLECULE REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLN 1 REMARK 465 ILE 2 REMARK 465 ALA 3 REMARK 465 SER 4 REMARK 465 ASP 5 REMARK 465 VAL 6 REMARK 465 GLU 7 REMARK 465 ALA 8 REMARK 465 PRO 9 REMARK 465 PRO 10 REMARK 465 PRO 11 REMARK 465 ALA 12 REMARK 465 PRO 13 REMARK 465 ALA 14 REMARK 465 LYS 15 REMARK 465 VAL 16 REMARK 465 GLU 17 REMARK 465 LYS 18 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 NZ LYS 218 OE2 GLU 260 4546 2.07 REMARK 500 OE1 GLU 214 CE LYS 264 4546 2.19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS 241 -3.50 133.11 SEQRES 1 314 GLN ILE ALA SER ASP VAL GLU ALA PRO PRO PRO ALA PRO SEQRES 2 314 ALA LYS VAL GLU LYS HIS SER LYS LYS MET GLU GLU GLY SEQRES 3 314 ILE THR VAL ASN LYS PHE LYS PRO LYS THR PRO TYR VAL SEQRES 4 314 GLY ARG CYS LEU LEU ASN THR LYS ILE THR GLY ASP ASP SEQRES 5 314 ALA PRO GLY GLU THR TRP HIS MET VAL PHE SER HIS GLU SEQRES 6 314 GLY GLU ILE PRO TYR ARG GLU GLY GLN SER VAL GLY VAL SEQRES 7 314 ILE PRO ASP GLY GLU ASP LYS ASN GLY LYS PRO HIS LYS SEQRES 8 314 LEU ARG LEU TYR SER ILE ALA SER SER ALA LEU GLY ASP SEQRES 9 314 PHE GLY ASP ALA LYS SER VAL SER LEU CYS VAL LYS ARG SEQRES 10 314 LEU ILE TYR THR ASN ASP ALA GLY GLU THR ILE LYS GLY SEQRES 11 314 VAL CYS SER ASN PHE LEU CYS ASP LEU LYS PRO GLY ALA SEQRES 12 314 GLU VAL LYS LEU THR GLY PRO VAL GLY LYS GLU MET LEU SEQRES 13 314 MET PRO LYS ASP PRO ASN ALA THR ILE ILE MET LEU GLY SEQRES 14 314 THR GLY THR GLY ILE ALA PRO PHE ARG SER PHE LEU TRP SEQRES 15 314 LYS MET PHE PHE GLU LYS HIS ASP ASP TYR LYS PHE ASN SEQRES 16 314 GLY LEU ALA TRP LEU PHE LEU GLY VAL PRO THR SER SER SEQRES 17 314 SER LEU LEU TYR LYS GLU GLU PHE GLU LYS MET LYS GLU SEQRES 18 314 LYS ALA PRO ASP ASN PHE ARG LEU ASP PHE ALA VAL SER SEQRES 19 314 ARG GLU GLN THR ASN GLU LYS GLY GLU LYS MET TYR ILE SEQRES 20 314 GLN THR ARG MET ALA GLN TYR ALA VAL GLU LEU TRP GLU SEQRES 21 314 MET LEU LYS LYS ASP ASN THR TYR VAL TYR MET CYS GLY SEQRES 22 314 LEU LYS GLY MET GLU LYS GLY ILE ASP ASP ILE MET VAL SEQRES 23 314 SER LEU ALA ALA ALA GLU GLY ILE ASP TRP ILE GLU TYR SEQRES 24 314 LYS ARG GLN LEU LYS LYS ALA GLU GLN TRP ASN VAL GLU SEQRES 25 314 VAL TYR FTNOTE 1 RESIDUE PRO 150 IS A CIS PROLINE. HET FAD 315 53 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE FORMUL 2 FAD C27 H33 N9 O15 P2 HELIX 1 A VAL 131 CYS 137 1 7 HELIX 2 B ALA 175 PHE 186 1 12 HELIX 3 C LYS 213 LYS 222 1 10 HELIX 4 D ILE 247 ALA 252 1 6 HELIX 5 E ALA 255 LEU 262 1 8 HELIX 6 F MET 277 ALA 290 1 14 HELIX 7 G TRP 296 LYS 305 1 10 SHEET 1 S1 7 TYR 38 LYS 47 0 SHEET 2 S1 7 THR 57 SER 63 -1 SHEET 3 S1 7 SER 110 LYS 116 -1 SHEET 4 S1 7 ARG 93 ILE 97 -1 SHEET 5 S1 7 SER 75 ILE 79 -1 SHEET 6 S1 7 GLU 144 THR 148 -1 SHEET 7 S1 7 TYR 38 LYS 47 -1 SHEET 1 S2 2 ILE 119 THR 121 0 SHEET 2 S2 2 THR 127 LYS 129 -1 SHEET 1 S3 5 PHE 227 VAL 233 0 SHEET 2 S3 5 LEU 197 VAL 204 1 SHEET 3 S3 5 THR 164 THR 170 1 SHEET 4 S3 5 THR 267 GLY 273 1 SHEET 5 S3 5 TRP 309 TYR 314 1 CISPEP 1 GLY 149 PRO 150 0 -5.21 CRYST1 90.700 57.700 68.100 90.00 100.00 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011025 0.000000 0.001944 0.00000 SCALE2 0.000000 0.017331 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014911 0.00000