HEADER TRANSFERASE 28-AUG-00 1FOT TITLE STRUCTURE OF THE UNLIGANDED CAMP-DEPENDENT PROTEIN KINASE CATALYTIC TITLE 2 SUBUNIT FROM SACCHAROMYCES CEREVISIAE COMPND MOL_ID: 1; COMPND 2 MOLECULE: CAMP-DEPENDENT PROTEIN KINASE TYPE 1; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: N-TERMINUS TRUNCATED TPK1; COMPND 5 SYNONYM: TPK1 DELTA; COMPND 6 EC: 2.7.1.37; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: BAKER'S YEAST; SOURCE 4 ORGANISM_TAXID: 4932; SOURCE 5 EXPRESSION_SYSTEM: SACCHAROMYCES CEREVISIAE; SOURCE 6 EXPRESSION_SYSTEM_COMMON: BAKER'S YEAST; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 4932; SOURCE 8 OTHER_DETAILS: SACCHAROMYCES CEREVISIAE KEYWDS CAMP-DEPENDENT PROTEIN KINASE, OPEN CONFORMATION, PROTEIN KINASE, KEYWDS 2 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR N.MASHHOON,G.CARMEL,J.W.PFLUGRATH,J.KURET REVDAT 7 09-OCT-24 1FOT 1 SEQADV REVDAT 6 14-AUG-19 1FOT 1 REMARK REVDAT 5 24-JUL-19 1FOT 1 REMARK LINK REVDAT 4 18-APR-18 1FOT 1 REMARK REVDAT 3 04-OCT-17 1FOT 1 REMARK REVDAT 2 24-FEB-09 1FOT 1 VERSN REVDAT 1 13-JUN-01 1FOT 0 JRNL AUTH N.MASHHOON,G.CARMEL,J.W.PFLUGRATH,J.KURET JRNL TITL STRUCTURE OF THE UNLIGANDED CAMP-DEPENDENT PROTEIN KINASE JRNL TITL 2 CATALYTIC SUBUNIT FROM SACCHAROMYCES CEREVISIAE. JRNL REF ARCH.BIOCHEM.BIOPHYS. V. 387 11 2001 JRNL REFN ISSN 0003-9861 JRNL PMID 11368172 JRNL DOI 10.1006/ABBI.2000.2241 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH J.KURET,J.W.PFLUGRATH REMARK 1 TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF THE REMARK 1 TITL 2 CAMP-DEPENDE PROTEIN KINASE CATALYTIC SUBUNIT FROM REMARK 1 TITL 3 SACCHAROMYCES CEREVISIAE REMARK 1 REF BIOCHEMISTRY V. 30 10595 1991 REMARK 1 REFN ISSN 0006-2960 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : CNS 0.5 REMARK 3 AUTHORS : BRUNGER,ADAMS,CLORE,DELANO,GROS,GROSSE- REMARK 3 : KUNSTLEVE,JIANG,KUSZEWSKI,NILGES,PANNU, REMARK 3 : READ,RICE,SIMONSON,WARREN REMARK 3 REMARK 3 REFINEMENT TARGET : CNS 0.5 STANDARD TABLES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 20.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : 3942096.890 REMARK 3 DATA CUTOFF LOW (ABS(F)) : 0.0000 REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 82.1 REMARK 3 NUMBER OF REFLECTIONS : 7854 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.194 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.500 REMARK 3 FREE R VALUE TEST SET COUNT : 828 REMARK 3 ESTIMATED ERROR OF FREE R VALUE : 0.008 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 6 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.97 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 52.70 REMARK 3 REFLECTIONS IN BIN (WORKING SET) : 721 REMARK 3 BIN R VALUE (WORKING SET) : 0.3100 REMARK 3 BIN FREE R VALUE : 0.3840 REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : 10.00 REMARK 3 BIN FREE R VALUE TEST SET COUNT : 80 REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : 0.043 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2495 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 2 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 76.40 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 50.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.63000 REMARK 3 B22 (A**2) : -0.63000 REMARK 3 B33 (A**2) : 1.25000 REMARK 3 B12 (A**2) : 6.30000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : 0.32 REMARK 3 ESD FROM SIGMAA (A) : 0.39 REMARK 3 LOW RESOLUTION CUTOFF (A) : 6.00 REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : 0.43 REMARK 3 ESD FROM C-V SIGMAA (A) : 0.57 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.009 REMARK 3 BOND ANGLES (DEGREES) : 1.600 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 26.50 REMARK 3 IMPROPER ANGLES (DEGREES) : 4.430 REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : RESTRAINED REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : 4.230 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE (A**2) : 6.350 ; 2.000 REMARK 3 SIDE-CHAIN BOND (A**2) : 7.580 ; 2.000 REMARK 3 SIDE-CHAIN ANGLE (A**2) : 10.060; 2.500 REMARK 3 REMARK 3 BULK SOLVENT MODELING. REMARK 3 METHOD USED : FLAT MODEL REMARK 3 KSOL : 0.31 REMARK 3 BSOL : 63.54 REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PROTEIN_REP.PARAM REMARK 3 PARAMETER FILE 2 : WATER_REP.PARAM REMARK 3 PARAMETER FILE 3 : THP.PAR REMARK 3 PARAMETER FILE 4 : NULL REMARK 3 TOPOLOGY FILE 1 : PROTEIN.TOP REMARK 3 TOPOLOGY FILE 2 : WATER.TOP REMARK 3 TOPOLOGY FILE 3 : THP.TOP REMARK 3 TOPOLOGY FILE 4 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FOT COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 20-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011779. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 9 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X12C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : DIFFRACTOMETER REMARK 200 DETECTOR MANUFACTURER : ENRAF-NONIUS FAST REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MADNESS REMARK 200 DATA SCALING SOFTWARE : FS, PROTEIN REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 7854 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 98.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 82.1 REMARK 200 DATA REDUNDANCY : 9.300 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 52.7 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.75 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.31 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: TRIS-HCL, PROPANOL, MGCL2, PH 8.5, REMARK 280 VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 65 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z+1/2 REMARK 290 5555 Y,-X+Y,Z+1/6 REMARK 290 6555 X-Y,X,Z+5/6 REMARK 290 7555 Y,X,-Z+2/3 REMARK 290 8555 X-Y,-Y,-Z REMARK 290 9555 -X,-X+Y,-Z+1/3 REMARK 290 10555 -Y,-X,-Z+1/6 REMARK 290 11555 -X+Y,Y,-Z+1/2 REMARK 290 12555 X,X-Y,-Z+5/6 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 214.66667 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 107.33333 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 161.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 53.66667 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 268.33333 REMARK 290 SMTRY1 7 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 7 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 214.66667 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 9 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 9 0.000000 0.000000 -1.000000 107.33333 REMARK 290 SMTRY1 10 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 10 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 -1.000000 53.66667 REMARK 290 SMTRY1 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 11 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 -1.000000 161.00000 REMARK 290 SMTRY1 12 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 12 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 12 0.000000 0.000000 -1.000000 268.33333 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 80 REMARK 465 LYS A 81 REMARK 465 GLN A 363 REMARK 465 GLN A 364 REMARK 465 GLY A 365 REMARK 465 GLN A 366 REMARK 465 GLY A 367 REMARK 465 ASP A 368 REMARK 465 THR A 369 REMARK 465 SER A 370 REMARK 465 GLN A 371 REMARK 465 PHE A 372 REMARK 465 ASP A 373 REMARK 465 LYS A 374 REMARK 465 TYR A 375 REMARK 465 PRO A 376 REMARK 465 GLU A 377 REMARK 465 GLU A 378 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 101 CA - C - N ANGL. DEV. = -14.8 DEGREES REMARK 500 VAL A 101 O - C - N ANGL. DEV. = 11.7 DEGREES REMARK 500 SER A 179 CA - C - N ANGL. DEV. = -16.0 DEGREES REMARK 500 GLN A 180 N - CA - C ANGL. DEV. = 16.6 DEGREES REMARK 500 TYR A 208 O - C - N ANGL. DEV. = -9.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 100 -178.97 -69.22 REMARK 500 ARG A 107 36.11 -96.06 REMARK 500 HIS A 108 -33.40 -131.09 REMARK 500 PHE A 154 162.01 161.61 REMARK 500 ASP A 156 -162.23 -109.78 REMARK 500 GLN A 180 -59.99 12.79 REMARK 500 ASN A 184 -58.89 -16.07 REMARK 500 TYR A 200 -70.45 -60.27 REMARK 500 SER A 203 0.33 -67.47 REMARK 500 ARG A 209 -5.31 77.49 REMARK 500 ASP A 210 50.27 -144.26 REMARK 500 LYS A 220 -56.80 -19.88 REMARK 500 ASP A 228 91.30 57.09 REMARK 500 ASP A 237 -99.25 -123.29 REMARK 500 TPO A 241 122.61 -23.90 REMARK 500 PRO A 246 -56.71 -15.80 REMARK 500 SER A 255 41.60 -98.90 REMARK 500 THR A 256 56.64 30.15 REMARK 500 ASP A 284 112.74 -176.15 REMARK 500 SER A 285 -38.93 -26.57 REMARK 500 ILE A 317 49.43 -84.76 REMARK 500 PHE A 341 60.38 -119.89 REMARK 500 GLU A 343 26.16 -76.76 REMARK 500 ASN A 353 60.71 -108.70 REMARK 500 TYR A 358 135.53 173.96 REMARK 500 VAL A 384 151.00 -39.43 REMARK 500 GLN A 385 64.51 -159.72 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU A 168 GLY A 169 -146.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 ARG A 181 0.11 SIDE CHAIN REMARK 500 ARG A 315 0.13 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION ANGLE, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 SER A 179 -19.89 REMARK 500 REMARK 500 REMARK: NULL DBREF 1FOT A 81 397 UNP P06244 KAPA_YEAST 81 397 SEQADV 1FOT PRO A 80 UNP P06244 SEE REMARK 999 SEQADV 1FOT TPO A 241 UNP P06244 THR 241 MODIFIED RESIDUE SEQRES 1 A 318 PRO LYS TYR SER LEU GLN ASP PHE GLN ILE LEU ARG THR SEQRES 2 A 318 LEU GLY THR GLY SER PHE GLY ARG VAL HIS LEU ILE ARG SEQRES 3 A 318 SER ARG HIS ASN GLY ARG TYR TYR ALA MET LYS VAL LEU SEQRES 4 A 318 LYS LYS GLU ILE VAL VAL ARG LEU LYS GLN VAL GLU HIS SEQRES 5 A 318 THR ASN ASP GLU ARG LEU MET LEU SER ILE VAL THR HIS SEQRES 6 A 318 PRO PHE ILE ILE ARG MET TRP GLY THR PHE GLN ASP ALA SEQRES 7 A 318 GLN GLN ILE PHE MET ILE MET ASP TYR ILE GLU GLY GLY SEQRES 8 A 318 GLU LEU PHE SER LEU LEU ARG LYS SER GLN ARG PHE PRO SEQRES 9 A 318 ASN PRO VAL ALA LYS PHE TYR ALA ALA GLU VAL CYS LEU SEQRES 10 A 318 ALA LEU GLU TYR LEU HIS SER LYS ASP ILE ILE TYR ARG SEQRES 11 A 318 ASP LEU LYS PRO GLU ASN ILE LEU LEU ASP LYS ASN GLY SEQRES 12 A 318 HIS ILE LYS ILE THR ASP PHE GLY PHE ALA LYS TYR VAL SEQRES 13 A 318 PRO ASP VAL THR TYR TPO LEU CYS GLY THR PRO ASP TYR SEQRES 14 A 318 ILE ALA PRO GLU VAL VAL SER THR LYS PRO TYR ASN LYS SEQRES 15 A 318 SER ILE ASP TRP TRP SER PHE GLY ILE LEU ILE TYR GLU SEQRES 16 A 318 MET LEU ALA GLY TYR THR PRO PHE TYR ASP SER ASN THR SEQRES 17 A 318 MET LYS THR TYR GLU LYS ILE LEU ASN ALA GLU LEU ARG SEQRES 18 A 318 PHE PRO PRO PHE PHE ASN GLU ASP VAL LYS ASP LEU LEU SEQRES 19 A 318 SER ARG LEU ILE THR ARG ASP LEU SER GLN ARG LEU GLY SEQRES 20 A 318 ASN LEU GLN ASN GLY THR GLU ASP VAL LYS ASN HIS PRO SEQRES 21 A 318 TRP PHE LYS GLU VAL VAL TRP GLU LYS LEU LEU SER ARG SEQRES 22 A 318 ASN ILE GLU THR PRO TYR GLU PRO PRO ILE GLN GLN GLY SEQRES 23 A 318 GLN GLY ASP THR SER GLN PHE ASP LYS TYR PRO GLU GLU SEQRES 24 A 318 ASP ILE ASN TYR GLY VAL GLN GLY GLU ASP PRO TYR ALA SEQRES 25 A 318 ASP LEU PHE ARG ASP PHE MODRES 1FOT TPO A 241 THR PHOSPHOTHREONINE HET TPO A 241 11 HETNAM TPO PHOSPHOTHREONINE HETSYN TPO PHOSPHONOTHREONINE FORMUL 1 TPO C4 H10 N O6 P FORMUL 2 HOH *2(H2 O) HELIX 1 1 SER A 83 GLN A 85 5 3 HELIX 2 2 LYS A 120 LEU A 126 1 7 HELIX 3 3 GLN A 128 ILE A 141 1 14 HELIX 4 4 GLU A 171 SER A 179 1 9 HELIX 5 5 PRO A 183 SER A 203 1 21 HELIX 6 6 LYS A 212 GLU A 214 5 3 HELIX 7 7 ALA A 250 SER A 255 1 6 HELIX 8 8 SER A 262 GLY A 278 1 17 HELIX 9 9 ASN A 286 ALA A 297 1 12 HELIX 10 10 ASN A 306 ILE A 317 1 12 HELIX 11 11 THR A 332 ASN A 337 1 6 HELIX 12 12 HIS A 338 LYS A 342 5 5 HELIX 13 13 VAL A 345 SER A 351 1 7 HELIX 14 14 TYR A 390 PHE A 394 5 5 SHEET 1 A 5 PHE A 87 THR A 95 0 SHEET 2 A 5 ARG A 100 SER A 106 -1 O VAL A 101 N LEU A 93 SHEET 3 A 5 TYR A 112 LYS A 119 -1 N TYR A 113 O ILE A 104 SHEET 4 A 5 GLN A 159 MET A 164 -1 N ILE A 160 O LEU A 118 SHEET 5 A 5 MET A 150 GLN A 155 -1 N TRP A 151 O ILE A 163 SHEET 1 B 2 ILE A 206 ILE A 207 0 SHEET 2 B 2 LYS A 233 TYR A 234 -1 O LYS A 233 N ILE A 207 SHEET 1 C 2 ILE A 216 LEU A 218 0 SHEET 2 C 2 ILE A 224 ILE A 226 -1 O LYS A 225 N LEU A 217 LINK C TYR A 240 N TPO A 241 1555 1555 1.33 LINK C TPO A 241 N LEU A 242 1555 1555 1.34 CRYST1 61.000 61.000 322.000 90.00 90.00 120.00 P 65 2 2 12 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.016393 0.009465 0.000000 0.00000 SCALE2 0.000000 0.018930 0.000000 0.00000 SCALE3 0.000000 0.000000 0.003106 0.00000