HEADER VIRUS 04-MAR-93 1FPV TITLE STRUCTURE DETERMINATION OF FELINE PANLEUKOPENIA VIRUS EMPTY TITLE 2 PARTICLES COMPND MOL_ID: 1; COMPND 2 MOLECULE: FELINE PANLEUKOPENIA VIRUS (STRAIN B) VIRAL COMPND 3 PROTEIN 2; COMPND 4 CHAIN: A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: FELINE PANLEUKOPENIA VIRUS; SOURCE 3 ORGANISM_TAXID: 10786; SOURCE 4 STRAIN: STRAIN B KEYWDS PANLEUKEMIA VIRUS COAT PROTEIN, ICOSAHEDRAL VIRUS EXPDTA X-RAY DIFFRACTION AUTHOR M.AGBANDJE,M.G.ROSSMANN REVDAT 2 24-FEB-09 1FPV 1 VERSN REVDAT 1 31-JAN-94 1FPV 0 JRNL AUTH M.AGBANDJE,R.MCKENNA,M.G.ROSSMANN,M.L.STRASSHEIM, JRNL AUTH 2 C.R.PARRISH JRNL TITL STRUCTURE DETERMINATION OF FELINE PANLEUKOPENIA JRNL TITL 2 VIRUS EMPTY PARTICLES. JRNL REF PROTEINS V. 16 155 1993 JRNL REFN ISSN 0887-3585 JRNL PMID 8392729 JRNL DOI 10.1002/PROT.340160204 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH H.WU,W.KELLER,M.G.ROSSMANN REMARK 1 TITL DETERMINATION AND REFINEMENT OF THE CANINE REMARK 1 TITL 2 PARVOVIRUS EMPTY CAPSID STRUCTURE REMARK 1 REF TO BE PUBLISHED REMARK 1 REFN REMARK 1 REFERENCE 2 REMARK 1 AUTH H.WU,M.G.ROSSMANN REMARK 1 TITL THE CANINE PARVOVIRUS EMPTY CAPSID STRUCTURE REMARK 1 REF J.MOL.BIOL. V. 233 231 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 3 REMARK 1 AUTH J.TSAO,M.S.CHAPMAN,H.WU,M.AGBANDJE,W.KELLER, REMARK 1 AUTH 2 M.G.ROSSMANN REMARK 1 TITL STRUCTURE DETERMINATION OF MONOCLINIC CANINE REMARK 1 TITL 2 PARVOVIRUS REMARK 1 REF ACTA CRYSTALLOGR.,SECT.B V. 48 75 1992 REMARK 1 REFN ISSN 0108-7681 REMARK 1 REFERENCE 4 REMARK 1 AUTH C.R.PARRISH REMARK 1 TITL MAPPING SPECIFIC FUNCTIONS IN THE CAPSID STRUCTURE REMARK 1 TITL 2 OF CANINE PARVOVIRUS AND FELINE PANLEUKOPENIA REMARK 1 TITL 3 VIRUS USING INFECTIOUS PLASMID CLONES REMARK 1 REF VIROLOGY V. 183 195 1991 REMARK 1 REFN ISSN 0042-6822 REMARK 1 REFERENCE 5 REMARK 1 AUTH J.TSAO,M.S.CHAPMAN,M.AGBANDJE,W.KELLER,K.SMITH, REMARK 1 AUTH 2 H.WU,M.LUO,T.J.SMITH,M.G.ROSSMANN,R.W.COMPANS, REMARK 1 AUTH 3 C.R.PARRISH REMARK 1 TITL THE THREE-DIMENSIONAL STRUCTURE OF CANINE REMARK 1 TITL 2 PARVOVIRUS AND ITS FUNCTIONAL IMPLICATIONS REMARK 1 REF SCIENCE V. 251 1456 1991 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 6 REMARK 1 AUTH M.LUO,J.TSAO,M.G.ROSSMANN,S.BASAK,R.W.COMPANS REMARK 1 TITL PRELIMINARY X-RAY CRYSTALLOGRAPHIC ANALYSIS OF REMARK 1 TITL 2 CANINE PARVOVIRUS CRYSTALS REMARK 1 REF J.MOL.BIOL. V. 200 209 1988 REMARK 1 REFN ISSN 0022-2836 REMARK 2 REMARK 2 RESOLUTION. 3.30 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : NULL REMARK 3 AUTHORS : NULL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.30 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : NULL REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4350 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : NULL REMARK 3 BOND ANGLES (DEGREES) : NULL REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FPV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): NULL REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): NULL REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 285 REMARK 285 THE ENTRY PRESENTED HERE DOES NOT CONTAIN THE COMPLETE REMARK 285 CRYSTAL ASYMMETRIC UNIT. IN ADDITION, THE COORDINATES REMARK 285 ARE NOT PRESENTED IN THE STANDARD CRYSTAL FRAME. REMARK 285 REMARK 285 IN ORDER TO GENERATE THE FULL CRYSTAL AU, APPLY THE REMARK 285 FOLLOWING TRANSFORMATION MATRIX OR MATRICES AND SELECTED REMARK 285 BIOMT RECORDS TO THE COORDINATES, AS SHOWN BELOW. REMARK 285 X0 1 -0.197263 0.967693 -0.157735 189.16762 REMARK 285 X0 2 -0.963581 -0.161608 0.213961 197.57207 REMARK 285 X0 3 0.181754 0.194386 0.963860 176.45615 REMARK 285 CRYSTAL AU = REMARK 285 (X0) * (BIOMT 1-60) * CHAINS A REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 190.05000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 175.45000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 189.65000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 175.45000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 190.05000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 189.65000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 THE ASSEMBLY REPRESENTED IN THIS ENTRY HAS REGULAR REMARK 300 ICOSAHEDRAL POINT SYMMETRY (SCHOENFLIES SYMBOL = I). REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 2 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 2 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 3 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 3 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 3 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 4 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 4 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 4 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 5 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 5 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 5 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 6 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 6 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 7 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 7 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 7 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 8 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 8 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 8 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 9 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 9 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 9 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 10 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 10 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 10 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 11 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 11 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 11 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 12 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 12 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 12 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 13 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 13 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 13 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 14 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 14 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 14 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 15 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 15 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 15 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 16 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 16 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 16 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT1 17 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 17 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 17 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 18 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 18 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 18 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 19 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 19 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 19 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 20 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 20 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 20 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 21 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 21 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 21 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 22 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 22 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 22 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 23 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 23 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 23 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 24 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 24 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 24 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 25 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 25 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 25 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 26 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 26 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT3 26 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 27 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 27 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 27 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 28 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 28 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 28 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 29 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 29 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT3 29 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 30 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 30 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 30 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 31 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 31 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 31 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 32 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 32 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 32 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 33 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 33 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 33 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT1 34 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT2 34 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 34 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT1 35 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 35 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 35 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 36 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 36 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 36 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT1 37 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 37 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 37 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 38 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT2 38 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT3 38 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 39 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT2 39 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT3 39 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT1 40 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 40 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 40 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 41 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 41 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 41 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 42 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 42 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 42 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 43 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 43 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 43 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 44 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 44 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 44 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 45 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 45 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 45 0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 46 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 46 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 46 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 47 0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT2 47 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 47 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 48 0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT2 48 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 48 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 49 0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT2 49 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 49 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 50 0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT2 50 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 50 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 51 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 51 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 51 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 52 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 52 -0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 52 0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT1 53 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 53 0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 53 0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 54 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 54 0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT3 54 -0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT1 55 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 55 -0.500000 -0.809017 -0.309017 0.00000 REMARK 350 BIOMT3 55 -0.809017 0.309017 0.500000 0.00000 REMARK 350 BIOMT1 56 0.000000 0.000000 -1.000000 0.00000 REMARK 350 BIOMT2 56 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 56 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT1 57 -0.309017 -0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 57 0.500000 -0.809017 0.309017 0.00000 REMARK 350 BIOMT3 57 -0.809017 -0.309017 0.500000 0.00000 REMARK 350 BIOMT1 58 -0.809017 -0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 58 -0.309017 -0.500000 0.809017 0.00000 REMARK 350 BIOMT3 58 -0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT1 59 -0.809017 0.309017 -0.500000 0.00000 REMARK 350 BIOMT2 59 -0.309017 0.500000 0.809017 0.00000 REMARK 350 BIOMT3 59 0.500000 0.809017 -0.309017 0.00000 REMARK 350 BIOMT1 60 -0.309017 0.500000 -0.809017 0.00000 REMARK 350 BIOMT2 60 0.500000 0.809017 0.309017 0.00000 REMARK 350 BIOMT3 60 0.809017 -0.309017 -0.500000 0.00000 REMARK 400 REMARK 400 COMPOUND REMARK 400 REMARK 400 INTERPRETABLE ELECTRON DENSITY BEGINS AT THE 37TH RESIDUE REMARK 400 OF VP2. THERE IS DIFFUSE DENSITY, SUGGESTING THAT ONE IN REMARK 400 FIVE OF THE N-TERMINI IS ON THE OUTSIDE OF THE CAPSID, AND REMARK 400 THAT THE POLYPEPTIDE RUNS DOWN THE FIVE-FOLD AXIS TO JOIN REMARK 400 RESIDUE 37 ON THE INSIDE SURFACE. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ASP A 3 REMARK 465 GLY A 4 REMARK 465 ALA A 5 REMARK 465 VAL A 6 REMARK 465 GLN A 7 REMARK 465 PRO A 8 REMARK 465 ASP A 9 REMARK 465 GLY A 10 REMARK 465 GLY A 11 REMARK 465 GLN A 12 REMARK 465 PRO A 13 REMARK 465 ALA A 14 REMARK 465 VAL A 15 REMARK 465 ARG A 16 REMARK 465 ASN A 17 REMARK 465 GLU A 18 REMARK 465 ARG A 19 REMARK 465 ALA A 20 REMARK 465 THR A 21 REMARK 465 GLY A 22 REMARK 465 SER A 23 REMARK 465 GLY A 24 REMARK 465 ASN A 25 REMARK 465 GLY A 26 REMARK 465 SER A 27 REMARK 465 GLY A 28 REMARK 465 GLY A 29 REMARK 465 GLY A 30 REMARK 465 GLY A 31 REMARK 465 GLY A 32 REMARK 465 GLY A 33 REMARK 465 GLY A 34 REMARK 465 SER A 35 REMARK 465 GLY A 36 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB ALA A 359 O ASP A 373 1.69 REMARK 500 O ASN A 369 N ALA A 371 1.78 REMARK 500 NE1 TRP A 109 OE2 GLU A 247 1.82 REMARK 500 CE MET A 96 N SER A 221 1.83 REMARK 500 OD1 ASP A 99 NH1 ARG A 216 1.83 REMARK 500 O ASP A 113 CD1 LEU A 195 1.84 REMARK 500 O PRO A 74 NH2 ARG A 520 1.92 REMARK 500 OD1 ASN A 564 CB ALA A 568 1.92 REMARK 500 NZ LYS A 93 O GLY A 227 1.94 REMARK 500 CG2 VAL A 424 CG2 VAL A 429 2.00 REMARK 500 NH1 ARG A 361 CG2 ILE A 401 2.02 REMARK 500 O ARG A 361 CA GLY A 407 2.03 REMARK 500 NH1 ARG A 361 O ALA A 402 2.05 REMARK 500 OD2 ASP A 99 NH1 ARG A 216 2.08 REMARK 500 O ASN A 517 N SER A 519 2.10 REMARK 500 O LYS A 93 O SER A 221 2.10 REMARK 500 O SER A 576 CD2 LEU A 578 2.11 REMARK 500 CG ASP A 99 NH1 ARG A 216 2.12 REMARK 500 CG GLU A 77 CE MET A 518 2.12 REMARK 500 O THR A 158 CD PRO A 160 2.15 REMARK 500 OE1 GLU A 193 NH2 ARG A 209 2.16 REMARK 500 O PRO A 432 ND2 ASN A 443 2.16 REMARK 500 O THR A 245 OG SER A 249 2.16 REMARK 500 NH1 ARG A 361 O ILE A 401 2.18 REMARK 500 O ASN A 564 N GLY A 567 2.18 REMARK 500 O LYS A 93 O HIS A 222 2.18 REMARK 500 ND2 ASN A 122 OD2 ASP A 125 2.18 REMARK 500 CD2 HIS A 70 OD1 ASP A 526 2.19 REMARK 500 O THR A 276 NE2 GLN A 577 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 THR A 228 CA THR A 228 C 0.162 REMARK 500 ASP A 239 C ASP A 240 N -0.186 REMARK 500 THR A 263 C THR A 263 O 0.156 REMARK 500 GLY A 264 N GLY A 264 CA 0.135 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY A 39 CA - C - N ANGL. DEV. = -27.5 DEGREES REMARK 500 GLY A 39 O - C - N ANGL. DEV. = 15.2 DEGREES REMARK 500 ILE A 40 C - N - CA ANGL. DEV. = -24.7 DEGREES REMARK 500 ARG A 67 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET A 73 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 81 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 MET A 87 CG - SD - CE ANGL. DEV. = 9.7 DEGREES REMARK 500 MET A 96 CG - SD - CE ANGL. DEV. = 9.9 DEGREES REMARK 500 MET A 174 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 MET A 183 CG - SD - CE ANGL. DEV. = 9.6 DEGREES REMARK 500 MET A 190 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 191 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 209 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 216 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 THR A 228 CA - C - O ANGL. DEV. = -17.8 DEGREES REMARK 500 THR A 228 CA - C - N ANGL. DEV. = 17.7 DEGREES REMARK 500 GLU A 260 OE1 - CD - OE2 ANGL. DEV. = 7.8 DEGREES REMARK 500 THR A 263 N - CA - CB ANGL. DEV. = -14.3 DEGREES REMARK 500 THR A 263 CA - C - N ANGL. DEV. = 21.3 DEGREES REMARK 500 THR A 263 O - C - N ANGL. DEV. = -10.8 DEGREES REMARK 500 ARG A 274 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 283 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 313 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 314 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 MET A 319 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 MET A 331 CG - SD - CE ANGL. DEV. = 9.8 DEGREES REMARK 500 ARG A 332 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 TYR A 342 CA - C - N ANGL. DEV. = -26.1 DEGREES REMARK 500 TYR A 342 O - C - N ANGL. DEV. = 27.9 DEGREES REMARK 500 TYR A 343 C - N - CA ANGL. DEV. = 21.3 DEGREES REMARK 500 ARG A 361 NE - CZ - NH2 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG A 377 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 382 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 397 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ARG A 408 NE - CZ - NH2 ANGL. DEV. = 3.6 DEGREES REMARK 500 ARG A 481 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 ASN A 492 CA - CB - CG ANGL. DEV. = -17.2 DEGREES REMARK 500 MET A 518 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 520 NE - CZ - NH2 ANGL. DEV. = 4.1 DEGREES REMARK 500 ARG A 540 NE - CZ - NH2 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET A 551 CG - SD - CE ANGL. DEV. = 10.0 DEGREES REMARK 500 ARG A 581 NE - CZ - NH2 ANGL. DEV. = 3.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 VAL A 38 10.15 -57.99 REMARK 500 LEU A 54 -151.16 -101.30 REMARK 500 ASN A 86 46.88 -142.98 REMARK 500 MET A 87 26.80 -73.67 REMARK 500 VAL A 92 0.99 -64.46 REMARK 500 VAL A 139 -91.87 -122.97 REMARK 500 ALA A 157 88.28 -55.99 REMARK 500 GLN A 159 -81.69 79.45 REMARK 500 PRO A 161 -157.89 -64.29 REMARK 500 ASP A 168 73.61 -102.81 REMARK 500 ASN A 181 83.28 16.49 REMARK 500 PRO A 184 173.94 -59.46 REMARK 500 THR A 186 79.07 -117.09 REMARK 500 ALA A 188 39.62 -86.32 REMARK 500 GLU A 193 59.21 -102.96 REMARK 500 THR A 194 -132.55 -101.68 REMARK 500 GLN A 213 108.87 -48.57 REMARK 500 PRO A 220 176.18 -58.10 REMARK 500 SER A 221 118.43 175.82 REMARK 500 PRO A 229 -85.98 -53.63 REMARK 500 THR A 230 128.01 176.46 REMARK 500 ASN A 231 116.99 -170.61 REMARK 500 PRO A 238 -6.34 -59.37 REMARK 500 ASP A 240 54.63 -108.36 REMARK 500 THR A 281 -126.58 -97.78 REMARK 500 ALA A 300 14.91 -67.30 REMARK 500 LYS A 312 18.13 -161.59 REMARK 500 ALA A 334 -156.08 -159.11 REMARK 500 TYR A 343 52.46 86.37 REMARK 500 GLU A 346 -166.16 -77.47 REMARK 500 SER A 348 -150.23 -142.64 REMARK 500 ARG A 361 -146.39 -109.66 REMARK 500 GLN A 370 -21.27 11.98 REMARK 500 ARG A 382 -47.50 53.05 REMARK 500 HIS A 384 47.58 -149.94 REMARK 500 GLN A 386 144.78 55.30 REMARK 500 ALA A 402 -170.97 -52.15 REMARK 500 TYR A 409 77.61 -106.08 REMARK 500 PRO A 410 13.40 -59.18 REMARK 500 ASP A 413 -168.38 -125.90 REMARK 500 TRP A 414 146.74 165.55 REMARK 500 PHE A 420 -67.64 64.81 REMARK 500 ASN A 421 70.44 14.95 REMARK 500 ASN A 426 -74.55 -34.60 REMARK 500 ASP A 427 -3.69 -49.16 REMARK 500 THR A 440 -78.75 -67.16 REMARK 500 PRO A 453 9.82 -61.03 REMARK 500 PRO A 465 -94.05 -65.98 REMARK 500 ASN A 466 -88.99 22.36 REMARK 500 ILE A 469 -73.31 -101.35 REMARK 500 LYS A 472 176.89 -34.56 REMARK 500 GLN A 491 -86.57 -79.80 REMARK 500 TYR A 510 111.68 -166.39 REMARK 500 ALA A 516 -120.73 12.25 REMARK 500 ASN A 517 101.57 -177.96 REMARK 500 MET A 518 67.67 -22.05 REMARK 500 VAL A 522 92.08 -56.59 REMARK 500 GLN A 558 -77.43 2.73 REMARK 500 ASN A 565 -31.47 -24.96 REMARK 500 SER A 576 -72.69 -90.45 REMARK 500 ALA A 579 123.50 -177.67 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: MAIN CHAIN PLANARITY REMARK 500 REMARK 500 THE FOLLOWING RESIDUES HAVE A PSEUDO PLANARITY REMARK 500 TORSION, C(I) - CA(I) - N(I+1) - O(I), GREATER REMARK 500 10.0 DEGREES. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 500 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 500 I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI ANGLE REMARK 500 GLY A 39 14.15 REMARK 500 THR A 228 13.11 REMARK 500 REMARK 500 REMARK: NULL REMARK 700 REMARK 700 SHEET REMARK 700 THE STRUCTURE OF FELINE PANLEUKOPENIA VIRUS FOLLOWS THE REMARK 700 CANONICAL PICORNAVIRUS "JELLY ROLL" BARREL. THE SHEET REMARK 700 IDENTIFIED AS "BDG" IS THAT REFERRED TO AS "BIDG" IN THE REMARK 700 LITERATURE WITH STRANDS 1 TO 5 CORRESPONDING TO STRANDS REMARK 700 A, B, I, D, AND G. THE SHEET IDENTIFIED AS "CHF" IS THE REMARK 700 SO-CALLED CHEF SHEET WITH STRANDS 1 TO 4 CORRESPONDING TO REMARK 700 STRANDS C, H, E, AND F. THESE TWO SHEETS ARE LOOSELY REMARK 700 CONNECTED TOGETHER BY HYDROGEN BONDS BETWEEN STRAND 4 OF REMARK 700 "CHF" AND RESIDUE 45 IMMEDIATELY PRECEDING STRAND 1 OF REMARK 700 "BDG" OF A FIVE-FOLD RELATED PROTOMER THAT IS NOT REMARK 700 EXPLICITLY PRESENTED ON THE ATOM RECORDS, BUT WHICH CAN BE REMARK 700 GENERATED USING THE SYMMETRY OPERATORS LISTED BELOW. FPV REMARK 700 CONTAINS SEVERAL LONG LOOPS BETWEEN STRANDS OF "BDG" AND REMARK 700 "CHF" WITH LITTLE ORGANIZED SECONDARY STRUCTURE. THERE ARE REMARK 700 STRANDS WITHIN THE LOOPS THAT ARE LOOSELY HYDROGEN-BONDED REMARK 700 TOGETHER. WITH FEWER HYDROGEN BONDS AND LESS REGULAR REMARK 700 SECONDARY STRUCTURE THEY MUST BE REGARDED MORE TENTATIVELY REMARK 700 UNTIL THE STRUCTURE IS REFINED. THIS IS WHY THE SHEET REMARK 700 "LP2" HAS BEEN IDENTIFIED SEPARATELY, ALTHOUGH IT COULD BE REMARK 700 CONSIDERED TO BE AN EXTENSION OF SHEET "CHF", EXTENDING REMARK 700 FROM STRAND 1. STRAND 1 OF "LP2" HAS A BULGE AND A CHANGE REMARK 700 OF DIRECTION AT RESIDUE 107, AFTER WHICH IT BECOMES STRAND REMARK 700 1 OF "CHF". THE MIDDLE STRAND OF "LP2" CONTAINS TWO REMARK 700 SEGMENTS THAT RUN IN THE SAME GENERAL DIRECTION, BUT ARE REMARK 700 SEPARATED BY NON-BETA STRUCTURE. THE FIRST SEGMENT (206 REMARK 700 TO 211) HYDROGEN BONDS ON ONE SIDE ONLY, TO RESIDUES 103 TO REMARK 700 111, AND THE SECOND SEGMENT (215 TO 218) HYDROGEN BONDS ON REMARK 700 THE OPPOSITE SIDE TO RESIDUES 230 TO 235. REMARK 700 IN ORDER TO REPRESENT THE BIFURCATED SHEET STRUCTURE IN THE REMARK 700 *SHEET* RECORDS BELOW, TWO SHEETS, *BDG* AND *CDG* ARE REMARK 700 DEFINED. STRANDS 1 - 4 OF THESE SHEETS ARE IDENTICAL. DBREF 1FPV A 1 584 UNP P24840 COAT_FPV19 144 727 SEQADV 1FPV GLU A 104 UNP P24840 GLN 247 CONFLICT SEQADV 1FPV ILE A 484 UNP P24840 VAL 627 CONFLICT SEQADV 1FPV GLN A 509 UNP P24840 GLU 652 CONFLICT SEQRES 1 A 584 MET SER ASP GLY ALA VAL GLN PRO ASP GLY GLY GLN PRO SEQRES 2 A 584 ALA VAL ARG ASN GLU ARG ALA THR GLY SER GLY ASN GLY SEQRES 3 A 584 SER GLY GLY GLY GLY GLY GLY GLY SER GLY GLY VAL GLY SEQRES 4 A 584 ILE SER THR GLY THR PHE ASN ASN GLN THR GLU PHE LYS SEQRES 5 A 584 PHE LEU GLU ASN GLY TRP VAL GLU ILE THR ALA ASN SER SEQRES 6 A 584 SER ARG LEU VAL HIS LEU ASN MET PRO GLU SER GLU ASN SEQRES 7 A 584 TYR LYS ARG VAL VAL VAL ASN ASN MET ASP LYS THR ALA SEQRES 8 A 584 VAL LYS GLY ASN MET ALA LEU ASP ASP ILE HIS VAL GLU SEQRES 9 A 584 ILE VAL THR PRO TRP SER LEU VAL ASP ALA ASN ALA TRP SEQRES 10 A 584 GLY VAL TRP PHE ASN PRO GLY ASP TRP GLN LEU ILE VAL SEQRES 11 A 584 ASN THR MET SER GLU LEU HIS LEU VAL SER PHE GLU GLN SEQRES 12 A 584 GLU ILE PHE ASN VAL VAL LEU LYS THR VAL SER GLU SER SEQRES 13 A 584 ALA THR GLN PRO PRO THR LYS VAL TYR ASN ASN ASP LEU SEQRES 14 A 584 THR ALA SER LEU MET VAL ALA LEU ASP SER ASN ASN THR SEQRES 15 A 584 MET PRO PHE THR PRO ALA ALA MET ARG SER GLU THR LEU SEQRES 16 A 584 GLY PHE TYR PRO TRP LYS PRO THR ILE PRO THR PRO TRP SEQRES 17 A 584 ARG TYR TYR PHE GLN TRP ASP ARG THR LEU ILE PRO SER SEQRES 18 A 584 HIS THR GLY THR SER GLY THR PRO THR ASN VAL TYR HIS SEQRES 19 A 584 GLY THR ASP PRO ASP ASP VAL GLN PHE TYR THR ILE GLU SEQRES 20 A 584 ASN SER VAL PRO VAL HIS LEU LEU ARG THR GLY ASP GLU SEQRES 21 A 584 PHE ALA THR GLY THR PHE PHE PHE ASP CYS LYS PRO CYS SEQRES 22 A 584 ARG LEU THR HIS THR TRP GLN THR ASN ARG ALA LEU GLY SEQRES 23 A 584 LEU PRO PRO PHE LEU ASN SER LEU PRO GLN SER GLU GLY SEQRES 24 A 584 ALA THR ASN PHE GLY ASP ILE GLY VAL GLN GLN ASP LYS SEQRES 25 A 584 ARG ARG GLY VAL THR GLN MET GLY ASN THR ASP TYR ILE SEQRES 26 A 584 THR GLU ALA THR ILE MET ARG PRO ALA GLU VAL GLY TYR SEQRES 27 A 584 SER ALA PRO TYR TYR SER PHE GLU ALA SER THR GLN GLY SEQRES 28 A 584 PRO PHE LYS THR PRO ILE ALA ALA GLY ARG GLY GLY ALA SEQRES 29 A 584 GLN THR ASP GLU ASN GLN ALA ALA ASP GLY ASP PRO ARG SEQRES 30 A 584 TYR ALA PHE GLY ARG GLN HIS GLY GLN LYS THR THR THR SEQRES 31 A 584 THR GLY GLU THR PRO GLU ARG PHE THR TYR ILE ALA HIS SEQRES 32 A 584 GLN ASP THR GLY ARG TYR PRO GLU GLY ASP TRP ILE GLN SEQRES 33 A 584 ASN ILE ASN PHE ASN LEU PRO VAL THR ASN ASP ASN VAL SEQRES 34 A 584 LEU LEU PRO THR ASP PRO ILE GLY GLY LYS THR GLY ILE SEQRES 35 A 584 ASN TYR THR ASN ILE PHE ASN THR TYR GLY PRO LEU THR SEQRES 36 A 584 ALA LEU ASN ASN VAL PRO PRO VAL TYR PRO ASN GLY GLN SEQRES 37 A 584 ILE TRP ASP LYS GLU PHE ASP THR ASP LEU LYS PRO ARG SEQRES 38 A 584 LEU HIS ILE ASN ALA PRO PHE VAL CYS GLN ASN ASN CYS SEQRES 39 A 584 PRO GLY GLN LEU PHE VAL LYS VAL ALA PRO ASN LEU THR SEQRES 40 A 584 ASN GLN TYR ASP PRO ASP ALA SER ALA ASN MET SER ARG SEQRES 41 A 584 ILE VAL THR TYR SER ASP PHE TRP TRP LYS GLY LYS LEU SEQRES 42 A 584 VAL PHE LYS ALA LYS LEU ARG ALA SER HIS THR TRP ASN SEQRES 43 A 584 PRO ILE GLN GLN MET SER ILE ASN VAL ASP ASN GLN PHE SEQRES 44 A 584 ASN TYR VAL PRO ASN ASN ILE GLY ALA MET LYS ILE VAL SEQRES 45 A 584 TYR GLU LYS SER GLN LEU ALA PRO ARG LYS LEU TYR HELIX 1 A0 TRP A 117 PHE A 121 1 5 HELIX 2 A1 ASN A 122 THR A 132 1 11 HELIX 3 B ILE A 246 SER A 249 1 4 SHEET 1 BDG 5 GLN A 48 LEU A 54 0 SHEET 2 BDG 5 TRP A 58 LEU A 71 -1 N GLU A 60 O LYS A 52 SHEET 3 BDG 5 THR A 523 LYS A 538 -1 N SER A 525 O LEU A 71 SHEET 4 BDG 5 SER A 134 LEU A 150 -1 O GLU A 135 N LYS A 538 SHEET 5 BDG 5 PHE A 261 PHE A 267 -1 N PHE A 261 O ILE A 145 SHEET 1 CDG 5 GLN A 48 LEU A 54 0 SHEET 2 CDG 5 TRP A 58 LEU A 71 -1 N GLU A 60 O LYS A 52 SHEET 3 CDG 5 THR A 523 LYS A 538 -1 N SER A 525 O LEU A 71 SHEET 4 CDG 5 SER A 134 LEU A 150 -1 O GLU A 135 N LYS A 538 SHEET 5 CDG 5 CYS A 273 LEU A 275 -1 N CYS A 273 O LEU A 136 SHEET 1 CHF 4 SER A 110 VAL A 112 0 SHEET 2 CHF 4 LEU A 498 LYS A 501 -1 N LEU A 498 O VAL A 112 SHEET 3 CHF 4 LEU A 173 LEU A 177 -1 N MET A 174 O LYS A 501 SHEET 4 CHF 4 VAL A 252 LEU A 255 -1 N HIS A 253 O VAL A 175 SHEET 1 CYL 2 LYS A 151 SER A 156 0 SHEET 2 CYL 2 THR A 162 ASP A 168 -1 N THR A 162 O SER A 156 SHEET 1 LP2 2 VAL A 103 LEU A 111 0 SHEET 2 LP2 2 THR A 206 TYR A 211 -1 N THR A 206 O LEU A 111 SHEET 1 L2 2 ASP A 215 LEU A 218 0 SHEET 2 L2 2 THR A 230 GLY A 235 -1 O GLY A 235 N ASP A 215 SHEET 1 LP4 2 ILE A 415 ASN A 417 0 SHEET 2 LP4 2 VAL A 429 LEU A 430 -1 O LEU A 430 N ILE A 415 SSBOND 1 CYS A 490 CYS A 494 1555 1555 2.04 CISPEP 1 PRO A 160 PRO A 161 0 -4.27 CISPEP 2 LEU A 422 PRO A 423 0 2.54 CISPEP 3 TYR A 464 PRO A 465 0 -7.98 CRYST1 380.100 379.300 350.900 90.00 90.00 90.00 P 21 21 21 240 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.002631 0.000000 0.000000 0.00000 SCALE2 0.000000 0.002636 0.000000 0.00000 SCALE3 0.000000 0.000000 0.002850 0.00000