data_1FQ2 # _entry.id 1FQ2 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.386 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FQ2 pdb_00001fq2 10.2210/pdb1fq2/pdb NDB BD0041 ? ? RCSB RCSB011805 ? ? WWPDB D_1000011805 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-11-27 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Data collection' 4 4 'Structure model' 'Database references' 5 4 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' chem_comp_atom 2 4 'Structure model' chem_comp_bond 3 4 'Structure model' database_2 4 4 'Structure model' pdbx_struct_conn_angle 5 4 'Structure model' struct_conn 6 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 4 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 4 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 4 'Structure model' '_pdbx_struct_conn_angle.value' 10 4 'Structure model' '_struct_conn.pdbx_dist_value' 11 4 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 12 4 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 13 4 'Structure model' '_struct_conn.ptnr2_label_asym_id' 14 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 15 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 16 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FQ2 _pdbx_database_status.recvd_initial_deposition_date 2000-09-01 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type NDB BDL084 'CGCGAATTCGCG dodecamer' unspecified NDB BD0005 'CGCGAATTCGCG dodecamer' unspecified NDB BD0029 'CGCGAATTCGCG dodecamer' unspecified # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Williams, L.D.' 1 'Sines, C.C.' 2 'McFail-Isom, L.' 3 'Howerton, S.B.' 4 'VanDerveer, D.' 5 # _citation.id primary _citation.title 'Cations Mediate B-DNA Conformational Heterogeneity' _citation.journal_abbrev J.Am.Chem.Soc. _citation.journal_volume 122 _citation.page_first 11048 _citation.page_last 11056 _citation.year 2000 _citation.journal_id_ASTM JACSAT _citation.country US _citation.journal_id_ISSN 0002-7863 _citation.journal_id_CSD 0004 _citation.book_publisher ? _citation.pdbx_database_id_PubMed -1 _citation.pdbx_database_id_DOI 10.1021/ja002244p # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Sines, C.C.' 1 ? primary 'McFail-Isom, L.' 2 ? primary 'Howerton, S.B.' 3 ? primary 'VanDerveer, D.' 4 ? primary 'Williams, L.D.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') ; 3663.392 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 187 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(DG)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCGCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 SPERMINE SPM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 DG n 1 11 DC n 1 12 DG n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC C A . n A 1 2 DG 2 2 2 DG G A . n A 1 3 DC 3 3 3 DC C A . n A 1 4 DG 4 4 4 DG G A . n A 1 5 DA 5 5 5 DA A A . n A 1 6 DA 6 6 6 DA A A . n A 1 7 DT 7 7 7 DT T A . n A 1 8 DT 8 8 8 DT T A . n A 1 9 DC 9 9 9 DC C A . n A 1 10 DG 10 10 10 DG G A . n A 1 11 DC 11 11 11 DC C A . n A 1 12 DG 12 12 12 DG G A . n B 1 1 DC 1 1 1 DC C B . n B 1 2 DG 2 2 2 DG G B . n B 1 3 DC 3 3 3 DC C B . n B 1 4 DG 4 4 4 DG G B . n B 1 5 DA 5 5 5 DA A B . n B 1 6 DA 6 6 6 DA A B . n B 1 7 DT 7 7 7 DT T B . n B 1 8 DT 8 8 8 DT T B . n B 1 9 DC 9 9 9 DC C B . n B 1 10 DG 10 10 10 DG G B . n B 1 11 DC 11 11 11 DC C B . n B 1 12 DG 12 12 12 DG G B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 1025 1025 MG MO6 A . D 3 SPM 1 1026 1026 SPM SPM B . E 4 HOH 1 1026 1 HOH HOH A . E 4 HOH 2 1027 2 HOH HOH A . E 4 HOH 3 1028 3 HOH HOH A . E 4 HOH 4 1029 4 HOH HOH A . E 4 HOH 5 1030 5 HOH HOH A . E 4 HOH 6 1031 6 HOH HOH A . E 4 HOH 7 1032 7 HOH HOH A . E 4 HOH 8 1033 10 HOH HOH A . E 4 HOH 9 1034 11 HOH HOH A . E 4 HOH 10 1035 12 HOH HOH A . E 4 HOH 11 1036 14 HOH HOH A . E 4 HOH 12 1037 15 HOH HOH A . E 4 HOH 13 1038 17 HOH HOH A . E 4 HOH 14 1039 19 HOH HOH A . E 4 HOH 15 1040 20 HOH HOH A . E 4 HOH 16 1041 21 HOH HOH A . E 4 HOH 17 1042 23 HOH HOH A . E 4 HOH 18 1043 24 HOH HOH A . E 4 HOH 19 1044 27 HOH HOH A . E 4 HOH 20 1045 29 HOH HOH A . E 4 HOH 21 1046 32 HOH HOH A . E 4 HOH 22 1047 33 HOH HOH A . E 4 HOH 23 1048 38 HOH HOH A . E 4 HOH 24 1049 39 HOH HOH A . E 4 HOH 25 1050 40 HOH HOH A . E 4 HOH 26 1051 41 HOH HOH A . E 4 HOH 27 1052 42 HOH HOH A . E 4 HOH 28 1053 43 HOH HOH A . E 4 HOH 29 1054 46 HOH HOH A . E 4 HOH 30 1055 49 HOH HOH A . E 4 HOH 31 1056 50 HOH HOH A . E 4 HOH 32 1057 51 HOH HOH A . E 4 HOH 33 1058 52 HOH HOH A . E 4 HOH 34 1059 55 HOH HOH A . E 4 HOH 35 1060 56 HOH HOH A . E 4 HOH 36 1061 58 HOH HOH A . E 4 HOH 37 1062 59 HOH HOH A . E 4 HOH 38 1063 62 HOH HOH A . E 4 HOH 39 1064 63 HOH HOH A . E 4 HOH 40 1065 64 HOH HOH A . E 4 HOH 41 1066 65 HOH HOH A . E 4 HOH 42 1067 67 HOH HOH A . E 4 HOH 43 1068 68 HOH HOH A . E 4 HOH 44 1069 69 HOH HOH A . E 4 HOH 45 1070 70 HOH HOH A . E 4 HOH 46 1071 71 HOH HOH A . E 4 HOH 47 1072 75 HOH HOH A . E 4 HOH 48 1073 77 HOH HOH A . E 4 HOH 49 1074 80 HOH HOH A . E 4 HOH 50 1075 82 HOH HOH A . E 4 HOH 51 1076 98 HOH HOH A . E 4 HOH 52 1077 101 HOH HOH A . E 4 HOH 53 1078 103 HOH HOH A . E 4 HOH 54 1079 104 HOH HOH A . E 4 HOH 55 1080 105 HOH HOH A . E 4 HOH 56 1081 107 HOH HOH A . E 4 HOH 57 1082 108 HOH HOH A . E 4 HOH 58 1083 109 HOH HOH A . E 4 HOH 59 1084 110 HOH HOH A . E 4 HOH 60 1085 113 HOH HOH A . E 4 HOH 61 1086 114 HOH HOH A . E 4 HOH 62 1087 115 HOH HOH A . E 4 HOH 63 1088 118 HOH HOH A . E 4 HOH 64 1089 121 HOH HOH A . E 4 HOH 65 1090 125 HOH HOH A . E 4 HOH 66 1091 126 HOH HOH A . E 4 HOH 67 1092 127 HOH HOH A . E 4 HOH 68 1093 128 HOH HOH A . E 4 HOH 69 1094 129 HOH HOH A . E 4 HOH 70 1095 137 HOH HOH A . E 4 HOH 71 1096 139 HOH HOH A . E 4 HOH 72 1097 141 HOH HOH A . E 4 HOH 73 1098 143 HOH HOH A . E 4 HOH 74 1099 144 HOH HOH A . E 4 HOH 75 1100 145 HOH HOH A . E 4 HOH 76 1101 147 HOH HOH A . E 4 HOH 77 1102 148 HOH HOH A . E 4 HOH 78 1103 149 HOH HOH A . E 4 HOH 79 1104 155 HOH HOH A . E 4 HOH 80 1105 156 HOH HOH A . E 4 HOH 81 1106 158 HOH HOH A . E 4 HOH 82 1107 160 HOH HOH A . E 4 HOH 83 1108 163 HOH HOH A . E 4 HOH 84 1109 166 HOH HOH A . E 4 HOH 85 1110 167 HOH HOH A . E 4 HOH 86 1111 168 HOH HOH A . E 4 HOH 87 1112 170 HOH HOH A . E 4 HOH 88 1113 171 HOH HOH A . E 4 HOH 89 1114 172 HOH HOH A . E 4 HOH 90 1115 173 HOH HOH A . E 4 HOH 91 1116 175 HOH HOH A . E 4 HOH 92 1117 176 HOH HOH A . E 4 HOH 93 1118 178 HOH HOH A . E 4 HOH 94 1119 181 HOH HOH A . E 4 HOH 95 1120 1025 HOH MO6 A . E 4 HOH 96 1121 1025 HOH MO6 A . E 4 HOH 97 1122 1025 HOH MO6 A . F 4 HOH 1 1027 8 HOH HOH B . F 4 HOH 2 1028 9 HOH HOH B . F 4 HOH 3 1029 13 HOH HOH B . F 4 HOH 4 1030 16 HOH HOH B . F 4 HOH 5 1031 18 HOH HOH B . F 4 HOH 6 1032 22 HOH HOH B . F 4 HOH 7 1033 25 HOH HOH B . F 4 HOH 8 1034 26 HOH HOH B . F 4 HOH 9 1035 28 HOH HOH B . F 4 HOH 10 1036 30 HOH HOH B . F 4 HOH 11 1037 31 HOH HOH B . F 4 HOH 12 1038 34 HOH HOH B . F 4 HOH 13 1039 35 HOH HOH B . F 4 HOH 14 1040 36 HOH HOH B . F 4 HOH 15 1041 37 HOH HOH B . F 4 HOH 16 1042 44 HOH HOH B . F 4 HOH 17 1043 45 HOH HOH B . F 4 HOH 18 1044 47 HOH HOH B . F 4 HOH 19 1045 48 HOH HOH B . F 4 HOH 20 1046 53 HOH HOH B . F 4 HOH 21 1047 54 HOH HOH B . F 4 HOH 22 1048 57 HOH HOH B . F 4 HOH 23 1049 60 HOH HOH B . F 4 HOH 24 1050 61 HOH HOH B . F 4 HOH 25 1051 66 HOH HOH B . F 4 HOH 26 1052 72 HOH HOH B . F 4 HOH 27 1053 73 HOH HOH B . F 4 HOH 28 1054 74 HOH HOH B . F 4 HOH 29 1055 76 HOH HOH B . F 4 HOH 30 1056 78 HOH HOH B . F 4 HOH 31 1057 79 HOH HOH B . F 4 HOH 32 1058 81 HOH HOH B . F 4 HOH 33 1059 83 HOH HOH B . F 4 HOH 34 1060 84 HOH HOH B . F 4 HOH 35 1061 85 HOH HOH B . F 4 HOH 36 1062 86 HOH HOH B . F 4 HOH 37 1063 87 HOH HOH B . F 4 HOH 38 1064 88 HOH HOH B . F 4 HOH 39 1065 89 HOH HOH B . F 4 HOH 40 1066 90 HOH HOH B . F 4 HOH 41 1067 91 HOH HOH B . F 4 HOH 42 1068 92 HOH HOH B . F 4 HOH 43 1069 93 HOH HOH B . F 4 HOH 44 1070 94 HOH HOH B . F 4 HOH 45 1071 95 HOH HOH B . F 4 HOH 46 1072 96 HOH HOH B . F 4 HOH 47 1073 97 HOH HOH B . F 4 HOH 48 1074 99 HOH HOH B . F 4 HOH 49 1075 100 HOH HOH B . F 4 HOH 50 1076 102 HOH HOH B . F 4 HOH 51 1077 106 HOH HOH B . F 4 HOH 52 1078 111 HOH HOH B . F 4 HOH 53 1079 112 HOH HOH B . F 4 HOH 54 1080 116 HOH HOH B . F 4 HOH 55 1081 117 HOH HOH B . F 4 HOH 56 1082 119 HOH HOH B . F 4 HOH 57 1083 120 HOH HOH B . F 4 HOH 58 1084 122 HOH HOH B . F 4 HOH 59 1085 123 HOH HOH B . F 4 HOH 60 1086 124 HOH HOH B . F 4 HOH 61 1087 130 HOH HOH B . F 4 HOH 62 1088 131 HOH HOH B . F 4 HOH 63 1089 132 HOH HOH B . F 4 HOH 64 1090 133 HOH HOH B . F 4 HOH 65 1091 134 HOH HOH B . F 4 HOH 66 1092 135 HOH HOH B . F 4 HOH 67 1093 136 HOH HOH B . F 4 HOH 68 1094 138 HOH HOH B . F 4 HOH 69 1095 140 HOH HOH B . F 4 HOH 70 1096 142 HOH HOH B . F 4 HOH 71 1097 146 HOH HOH B . F 4 HOH 72 1098 150 HOH HOH B . F 4 HOH 73 1099 151 HOH HOH B . F 4 HOH 74 1100 152 HOH HOH B . F 4 HOH 75 1101 153 HOH HOH B . F 4 HOH 76 1102 154 HOH HOH B . F 4 HOH 77 1103 157 HOH HOH B . F 4 HOH 78 1104 159 HOH HOH B . F 4 HOH 79 1105 161 HOH HOH B . F 4 HOH 80 1106 162 HOH HOH B . F 4 HOH 81 1107 164 HOH HOH B . F 4 HOH 82 1108 165 HOH HOH B . F 4 HOH 83 1109 169 HOH HOH B . F 4 HOH 84 1110 174 HOH HOH B . F 4 HOH 85 1111 177 HOH HOH B . F 4 HOH 86 1112 179 HOH HOH B . F 4 HOH 87 1113 180 HOH HOH B . F 4 HOH 88 1114 1025 HOH MO6 B . F 4 HOH 89 1115 1025 HOH MO6 B . F 4 HOH 90 1116 1025 HOH MO6 B . # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 N 1 B SPM 1026 ? C8 ? D SPM 1 C8 2 1 N 1 B SPM 1026 ? C9 ? D SPM 1 C9 3 1 N 1 B SPM 1026 ? N10 ? D SPM 1 N10 4 1 N 1 B SPM 1026 ? C11 ? D SPM 1 C11 5 1 N 1 B SPM 1026 ? C12 ? D SPM 1 C12 6 1 N 1 B SPM 1026 ? C13 ? D SPM 1 C13 7 1 N 1 B SPM 1026 ? N14 ? D SPM 1 N14 # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SHELXS phasing . ? 1 SHELXL-97 refinement . ? 2 DENZO 'data reduction' . ? 3 SCALEPACK 'data scaling' . ? 4 # _cell.entry_id 1FQ2 _cell.length_a 25.588 _cell.length_b 40.818 _cell.length_c 66.673 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FQ2 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting orthorhombic _symmetry.Int_Tables_number 19 # _exptl.entry_id 1FQ2 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.28 _exptl_crystal.density_percent_sol 45.97 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.temp 295 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details ;MgCl2, Potassium Cacodylate, Spermine, MPD, DNA. pH 6.5, VAPOR DIFFUSION, SITTING DROP at 295K, VAPOR DIFFUSION, SITTING DROP ; _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 'Potassium Cacodylate' ? ? ? 1 2 1 Spermine ? ? ? 1 3 1 MgCl2 ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'AREA DETECTOR' _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.1 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X26C' _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X26C _diffrn_source.pdbx_wavelength 1.1 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FQ2 _reflns.observed_criterion_sigma_I 0.0 _reflns.observed_criterion_sigma_F 0.0 _reflns.d_resolution_low 10 _reflns.d_resolution_high 1.20 _reflns.number_obs 19368 _reflns.number_all ? _reflns.percent_possible_obs ? _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _refine.entry_id 1FQ2 _refine.ls_number_reflns_obs 19368 _refine.ls_number_reflns_all 19368 _refine.pdbx_ls_sigma_I 0.0 _refine.pdbx_ls_sigma_F 0.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 1.20 _refine.ls_percent_reflns_obs 86.0 _refine.ls_R_factor_obs 0.1410000 _refine.ls_R_factor_all 0.1392000 _refine.ls_R_factor_R_work ? _refine.ls_R_factor_R_free 0.2150000 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 10. _refine.ls_number_reflns_R_free 1933 _refine.ls_number_parameters 6153 _refine.ls_number_restraints 1872 _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'MOEWS & KRETSINGER, J.MOL.BIOL.91(1973)201-22' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method 'FREE R' _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'AB INITIO' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1FQ2 _refine_analyze.Luzzati_coordinate_error_obs ? _refine_analyze.Luzzati_sigma_a_obs ? _refine_analyze.Luzzati_d_res_low_obs ? _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues 0 _refine_analyze.occupancy_sum_hydrogen 272. _refine_analyze.occupancy_sum_non_hydrogen 678. _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 486 _refine_hist.pdbx_number_atoms_ligand 14 _refine_hist.number_atoms_solvent 181 _refine_hist.number_atoms_total 681 _refine_hist.d_res_high 1.20 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function s_bond_d 0.016 ? ? ? 'X-RAY DIFFRACTION' ? s_angle_d 0.037 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_dist 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_from_restr_planes 0.0232 ? ? ? 'X-RAY DIFFRACTION' ? s_zero_chiral_vol 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_non_zero_chiral_vol 0.015 ? ? ? 'X-RAY DIFFRACTION' ? s_anti_bump_dis_restr 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_rigid_bond_adp_cmpnt 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_similar_adp_cmpnt 0.00 ? ? ? 'X-RAY DIFFRACTION' ? s_approx_iso_adps 0.00 ? ? ? 'X-RAY DIFFRACTION' ? # _pdbx_refine.entry_id 1FQ2 _pdbx_refine.R_factor_all_no_cutoff 0.1390000 _pdbx_refine.R_factor_obs_no_cutoff 0.1410000 _pdbx_refine.free_R_factor_no_cutoff 0.2150000 _pdbx_refine.free_R_val_test_set_size_perc_no_cutoff 10. _pdbx_refine.free_R_val_test_set_ct_no_cutoff 1933 _pdbx_refine.R_factor_all_4sig_cutoff 0.1380000 _pdbx_refine.R_factor_obs_4sig_cutoff 0.1399000 _pdbx_refine.free_R_factor_4sig_cutoff 0.2130000 _pdbx_refine.free_R_val_test_set_size_perc_4sig_cutoff 10. _pdbx_refine.free_R_val_test_set_ct_4sig_cutoff 1900 _pdbx_refine.number_reflns_obs_4sig_cutoff 19040 _pdbx_refine.number_reflns_obs_no_cutoff 19368 _pdbx_refine.pdbx_refine_id 'X-RAY DIFFRACTION' _pdbx_refine.free_R_error_no_cutoff ? # _database_PDB_matrix.entry_id 1FQ2 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.000000 _database_PDB_matrix.origx_vector[2] 0.000000 _database_PDB_matrix.origx_vector[3] 0.000000 # _struct.entry_id 1FQ2 _struct.title 'CRYSTAL STRUCTURE ANALYSIS OF THE POTASSIUM FORM OF B-DNA DODECAMER CGCGAATTCGCG' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FQ2 _struct_keywords.pdbx_keywords DNA _struct_keywords.text 'cations, Dickerson Dodecamer, Dickerson-Drew Dodecamer, minor groove, DNA' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1FQ2 _struct_ref.pdbx_db_accession 1FQ2 _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FQ2 A 1 ? 12 ? 1FQ2 1 ? 12 ? 1 12 2 1 1FQ2 B 1 ? 12 ? 1FQ2 1 ? 12 ? 1 12 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role metalc1 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1025 A HOH 1120 1_555 ? ? ? ? ? ? ? 2.115 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1025 A HOH 1121 1_555 ? ? ? ? ? ? ? 2.083 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 1025 A HOH 1122 1_555 ? ? ? ? ? ? ? 2.103 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1025 B HOH 1114 1_555 ? ? ? ? ? ? ? 2.124 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1025 B HOH 1115 1_555 ? ? ? ? ? ? ? 2.111 ? ? metalc6 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 1025 B HOH 1116 1_555 ? ? ? ? ? ? ? 2.128 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 12 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 11 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B DG 10 N1 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B DG 10 O6 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B DG 10 N2 ? ? A DC 3 B DG 10 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 9 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 8 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 7 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 6 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 5 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 4 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A DG 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A DG 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A DG 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A DG 10 B DC 3 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 2 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 1 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 1120 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? E HOH . ? A HOH 1121 ? 1_555 93.3 ? 2 O ? E HOH . ? A HOH 1120 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? E HOH . ? A HOH 1122 ? 1_555 89.4 ? 3 O ? E HOH . ? A HOH 1121 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? E HOH . ? A HOH 1122 ? 1_555 92.7 ? 4 O ? E HOH . ? A HOH 1120 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1114 ? 1_555 92.3 ? 5 O ? E HOH . ? A HOH 1121 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1114 ? 1_555 173.7 ? 6 O ? E HOH . ? A HOH 1122 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1114 ? 1_555 90.2 ? 7 O ? E HOH . ? A HOH 1120 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1115 ? 1_555 177.6 ? 8 O ? E HOH . ? A HOH 1121 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1115 ? 1_555 86.6 ? 9 O ? E HOH . ? A HOH 1122 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1115 ? 1_555 93.1 ? 10 O ? F HOH . ? B HOH 1114 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1115 ? 1_555 87.7 ? 11 O ? E HOH . ? A HOH 1120 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1116 ? 1_555 88.0 ? 12 O ? E HOH . ? A HOH 1121 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1116 ? 1_555 87.3 ? 13 O ? E HOH . ? A HOH 1122 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1116 ? 1_555 177.4 ? 14 O ? F HOH . ? B HOH 1114 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1116 ? 1_555 90.0 ? 15 O ? F HOH . ? B HOH 1115 ? 1_555 MG ? C MG . ? A MG 1025 ? 1_555 O ? F HOH . ? B HOH 1116 ? 1_555 89.6 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software B SPM 1026 ? 9 'BINDING SITE FOR RESIDUE SPM B 1026' AC2 Software A MG 1025 ? 6 'BINDING SITE FOR RESIDUE MG A 1025' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 9 DG A 10 ? DG A 10 . ? 1_555 ? 2 AC1 9 HOH E . ? HOH A 1061 . ? 1_555 ? 3 AC1 9 DC B 1 ? DC B 1 . ? 1_555 ? 4 AC1 9 DG B 2 ? DG B 2 . ? 1_555 ? 5 AC1 9 HOH F . ? HOH B 1042 . ? 1_555 ? 6 AC1 9 HOH F . ? HOH B 1054 . ? 1_555 ? 7 AC1 9 HOH F . ? HOH B 1061 . ? 2_564 ? 8 AC1 9 HOH F . ? HOH B 1070 . ? 2_564 ? 9 AC1 9 HOH F . ? HOH B 1071 . ? 2_564 ? 10 AC2 6 HOH E . ? HOH A 1120 . ? 1_555 ? 11 AC2 6 HOH E . ? HOH A 1121 . ? 1_555 ? 12 AC2 6 HOH E . ? HOH A 1122 . ? 1_555 ? 13 AC2 6 HOH F . ? HOH B 1114 . ? 1_555 ? 14 AC2 6 HOH F . ? HOH B 1115 . ? 1_555 ? 15 AC2 6 HOH F . ? HOH B 1116 . ? 1_555 ? # _pdbx_validate_rmsd_bond.id 1 _pdbx_validate_rmsd_bond.PDB_model_num 1 _pdbx_validate_rmsd_bond.auth_atom_id_1 "O4'" _pdbx_validate_rmsd_bond.auth_asym_id_1 B _pdbx_validate_rmsd_bond.auth_comp_id_1 DT _pdbx_validate_rmsd_bond.auth_seq_id_1 8 _pdbx_validate_rmsd_bond.PDB_ins_code_1 ? _pdbx_validate_rmsd_bond.label_alt_id_1 ? _pdbx_validate_rmsd_bond.auth_atom_id_2 "C1'" _pdbx_validate_rmsd_bond.auth_asym_id_2 B _pdbx_validate_rmsd_bond.auth_comp_id_2 DT _pdbx_validate_rmsd_bond.auth_seq_id_2 8 _pdbx_validate_rmsd_bond.PDB_ins_code_2 ? _pdbx_validate_rmsd_bond.label_alt_id_2 ? _pdbx_validate_rmsd_bond.bond_value 1.499 _pdbx_validate_rmsd_bond.bond_target_value 1.420 _pdbx_validate_rmsd_bond.bond_deviation 0.079 _pdbx_validate_rmsd_bond.bond_standard_deviation 0.011 _pdbx_validate_rmsd_bond.linker_flag N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 C2 A DC 1 ? ? N3 A DC 1 ? ? C4 A DC 1 ? ? 116.53 119.90 -3.37 0.50 N 2 1 N3 A DC 1 ? ? C2 A DC 1 ? ? O2 A DC 1 ? ? 117.61 121.90 -4.29 0.70 N 3 1 "O4'" A DG 2 ? ? "C1'" A DG 2 ? ? "C2'" A DG 2 ? ? 101.07 105.90 -4.83 0.80 N 4 1 "C3'" A DG 2 ? ? "O3'" A DG 2 ? ? P A DC 3 ? ? 131.18 119.70 11.48 1.20 Y 5 1 "C3'" A DG 4 ? ? "O3'" A DG 4 ? ? P A DA 5 ? ? 134.12 119.70 14.42 1.20 Y 6 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 103.33 108.00 -4.67 0.70 N 7 1 "C3'" A DA 6 ? ? "O3'" A DA 6 ? ? P A DT 7 ? ? 127.13 119.70 7.43 1.20 Y 8 1 C6 A DT 7 ? ? N1 A DT 7 ? ? C2 A DT 7 ? ? 117.31 121.30 -3.99 0.50 N 9 1 N3 A DT 8 ? ? C2 A DT 8 ? ? O2 A DT 8 ? ? 118.59 122.30 -3.71 0.60 N 10 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 102.97 108.00 -5.03 0.70 N 11 1 "C3'" A DG 10 ? ? "C2'" A DG 10 ? ? "C1'" A DG 10 ? ? 96.27 102.40 -6.13 0.80 N 12 1 "O4'" A DG 10 ? ? "C1'" A DG 10 ? ? N9 A DG 10 ? ? 111.29 108.30 2.99 0.30 N 13 1 "C3'" A DG 10 ? ? "O3'" A DG 10 ? ? P A DC 11 ? ? 126.90 119.70 7.20 1.20 Y 14 1 N1 A DC 11 ? ? "C1'" A DC 11 ? ? "C2'" A DC 11 ? ? 123.96 114.30 9.66 1.40 N 15 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 100.90 108.00 -7.10 0.70 N 16 1 "C1'" A DG 12 ? ? "O4'" A DG 12 ? ? "C4'" A DG 12 ? ? 116.42 110.30 6.12 0.70 N 17 1 C5 A DG 12 ? ? C6 A DG 12 ? ? N1 A DG 12 ? ? 115.34 111.50 3.84 0.50 N 18 1 "O4'" B DC 1 ? ? "C1'" B DC 1 ? ? N1 B DC 1 ? ? 102.66 108.00 -5.34 0.70 N 19 1 C2 B DC 1 ? ? N3 B DC 1 ? ? C4 B DC 1 ? ? 116.80 119.90 -3.10 0.50 N 20 1 N1 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 123.56 118.90 4.66 0.60 N 21 1 N3 B DC 1 ? ? C2 B DC 1 ? ? O2 B DC 1 ? ? 115.00 121.90 -6.90 0.70 N 22 1 "O4'" B DC 3 ? ? "C1'" B DC 3 ? ? N1 B DC 3 ? ? 103.21 108.00 -4.79 0.70 N 23 1 "O4'" B DG 4 ? ? "C1'" B DG 4 ? ? N9 B DG 4 ? ? 114.20 108.30 5.90 0.30 N 24 1 C8 B DG 4 ? ? N9 B DG 4 ? ? C4 B DG 4 ? ? 103.45 106.40 -2.95 0.40 N 25 1 N9 B DG 4 ? ? C4 B DG 4 ? ? C5 B DG 4 ? ? 107.98 105.40 2.58 0.40 N 26 1 "C3'" B DG 4 ? ? "O3'" B DG 4 ? ? P B DA 5 ? ? 130.17 119.70 10.47 1.20 Y 27 1 "O4'" B DA 5 ? ? "C1'" B DA 5 ? ? N9 B DA 5 ? ? 103.06 108.00 -4.94 0.70 N 28 1 "C3'" B DA 6 ? ? "O3'" B DA 6 ? ? P B DT 7 ? ? 127.17 119.70 7.47 1.20 Y 29 1 C6 B DT 7 ? ? C5 B DT 7 ? ? C7 B DT 7 ? ? 119.09 122.90 -3.81 0.60 N 30 1 N1 B DT 8 ? ? "C1'" B DT 8 ? ? "C2'" B DT 8 ? ? 124.52 114.30 10.22 1.40 N 31 1 "O4'" B DT 8 ? ? "C1'" B DT 8 ? ? N1 B DT 8 ? ? 100.61 108.00 -7.39 0.70 N 32 1 C6 B DT 8 ? ? C5 B DT 8 ? ? C7 B DT 8 ? ? 118.84 122.90 -4.06 0.60 N 33 1 "C3'" B DT 8 ? ? "O3'" B DT 8 ? ? P B DC 9 ? ? 129.94 119.70 10.24 1.20 Y 34 1 "O4'" B DC 9 ? ? "C1'" B DC 9 ? ? N1 B DC 9 ? ? 102.61 108.00 -5.39 0.70 N 35 1 N3 B DC 9 ? ? C4 B DC 9 ? ? C5 B DC 9 ? ? 119.43 121.90 -2.47 0.40 N 36 1 C4 B DC 11 ? ? C5 B DC 11 ? ? C6 B DC 11 ? ? 120.48 117.40 3.08 0.50 N 37 1 C2 B DG 12 ? ? N3 B DG 12 ? ? C4 B DG 12 ? ? 115.41 111.90 3.51 0.50 N 38 1 N3 B DG 12 ? ? C4 B DG 12 ? ? C5 B DG 12 ? ? 125.11 128.60 -3.49 0.50 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal DA OP3 O N N 1 DA P P N N 2 DA OP1 O N N 3 DA OP2 O N N 4 DA "O5'" O N N 5 DA "C5'" C N N 6 DA "C4'" C N R 7 DA "O4'" O N N 8 DA "C3'" C N S 9 DA "O3'" O N N 10 DA "C2'" C N N 11 DA "C1'" C N R 12 DA N9 N Y N 13 DA C8 C Y N 14 DA N7 N Y N 15 DA C5 C Y N 16 DA C6 C Y N 17 DA N6 N N N 18 DA N1 N Y N 19 DA C2 C Y N 20 DA N3 N Y N 21 DA C4 C Y N 22 DA HOP3 H N N 23 DA HOP2 H N N 24 DA "H5'" H N N 25 DA "H5''" H N N 26 DA "H4'" H N N 27 DA "H3'" H N N 28 DA "HO3'" H N N 29 DA "H2'" H N N 30 DA "H2''" H N N 31 DA "H1'" H N N 32 DA H8 H N N 33 DA H61 H N N 34 DA H62 H N N 35 DA H2 H N N 36 DC OP3 O N N 37 DC P P N N 38 DC OP1 O N N 39 DC OP2 O N N 40 DC "O5'" O N N 41 DC "C5'" C N N 42 DC "C4'" C N R 43 DC "O4'" O N N 44 DC "C3'" C N S 45 DC "O3'" O N N 46 DC "C2'" C N N 47 DC "C1'" C N R 48 DC N1 N N N 49 DC C2 C N N 50 DC O2 O N N 51 DC N3 N N N 52 DC C4 C N N 53 DC N4 N N N 54 DC C5 C N N 55 DC C6 C N N 56 DC HOP3 H N N 57 DC HOP2 H N N 58 DC "H5'" H N N 59 DC "H5''" H N N 60 DC "H4'" H N N 61 DC "H3'" H N N 62 DC "HO3'" H N N 63 DC "H2'" H N N 64 DC "H2''" H N N 65 DC "H1'" H N N 66 DC H41 H N N 67 DC H42 H N N 68 DC H5 H N N 69 DC H6 H N N 70 DG OP3 O N N 71 DG P P N N 72 DG OP1 O N N 73 DG OP2 O N N 74 DG "O5'" O N N 75 DG "C5'" C N N 76 DG "C4'" C N R 77 DG "O4'" O N N 78 DG "C3'" C N S 79 DG "O3'" O N N 80 DG "C2'" C N N 81 DG "C1'" C N R 82 DG N9 N Y N 83 DG C8 C Y N 84 DG N7 N Y N 85 DG C5 C Y N 86 DG C6 C N N 87 DG O6 O N N 88 DG N1 N N N 89 DG C2 C N N 90 DG N2 N N N 91 DG N3 N N N 92 DG C4 C Y N 93 DG HOP3 H N N 94 DG HOP2 H N N 95 DG "H5'" H N N 96 DG "H5''" H N N 97 DG "H4'" H N N 98 DG "H3'" H N N 99 DG "HO3'" H N N 100 DG "H2'" H N N 101 DG "H2''" H N N 102 DG "H1'" H N N 103 DG H8 H N N 104 DG H1 H N N 105 DG H21 H N N 106 DG H22 H N N 107 DT OP3 O N N 108 DT P P N N 109 DT OP1 O N N 110 DT OP2 O N N 111 DT "O5'" O N N 112 DT "C5'" C N N 113 DT "C4'" C N R 114 DT "O4'" O N N 115 DT "C3'" C N S 116 DT "O3'" O N N 117 DT "C2'" C N N 118 DT "C1'" C N R 119 DT N1 N N N 120 DT C2 C N N 121 DT O2 O N N 122 DT N3 N N N 123 DT C4 C N N 124 DT O4 O N N 125 DT C5 C N N 126 DT C7 C N N 127 DT C6 C N N 128 DT HOP3 H N N 129 DT HOP2 H N N 130 DT "H5'" H N N 131 DT "H5''" H N N 132 DT "H4'" H N N 133 DT "H3'" H N N 134 DT "HO3'" H N N 135 DT "H2'" H N N 136 DT "H2''" H N N 137 DT "H1'" H N N 138 DT H3 H N N 139 DT H71 H N N 140 DT H72 H N N 141 DT H73 H N N 142 DT H6 H N N 143 HOH O O N N 144 HOH H1 H N N 145 HOH H2 H N N 146 MG MG MG N N 147 SPM N1 N N N 148 SPM C2 C N N 149 SPM C3 C N N 150 SPM C4 C N N 151 SPM N5 N N N 152 SPM C6 C N N 153 SPM C7 C N N 154 SPM C8 C N N 155 SPM C9 C N N 156 SPM N10 N N N 157 SPM C11 C N N 158 SPM C12 C N N 159 SPM C13 C N N 160 SPM N14 N N N 161 SPM HN11 H N N 162 SPM HN12 H N N 163 SPM H21 H N N 164 SPM H22 H N N 165 SPM H31 H N N 166 SPM H32 H N N 167 SPM H41 H N N 168 SPM H42 H N N 169 SPM HN5 H N N 170 SPM H61 H N N 171 SPM H62 H N N 172 SPM H71 H N N 173 SPM H72 H N N 174 SPM H81 H N N 175 SPM H82 H N N 176 SPM H91 H N N 177 SPM H92 H N N 178 SPM HN0 H N N 179 SPM H111 H N N 180 SPM H112 H N N 181 SPM H121 H N N 182 SPM H122 H N N 183 SPM H131 H N N 184 SPM H132 H N N 185 SPM HN41 H N N 186 SPM HN42 H N N 187 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal DA OP3 P sing N N 1 DA OP3 HOP3 sing N N 2 DA P OP1 doub N N 3 DA P OP2 sing N N 4 DA P "O5'" sing N N 5 DA OP2 HOP2 sing N N 6 DA "O5'" "C5'" sing N N 7 DA "C5'" "C4'" sing N N 8 DA "C5'" "H5'" sing N N 9 DA "C5'" "H5''" sing N N 10 DA "C4'" "O4'" sing N N 11 DA "C4'" "C3'" sing N N 12 DA "C4'" "H4'" sing N N 13 DA "O4'" "C1'" sing N N 14 DA "C3'" "O3'" sing N N 15 DA "C3'" "C2'" sing N N 16 DA "C3'" "H3'" sing N N 17 DA "O3'" "HO3'" sing N N 18 DA "C2'" "C1'" sing N N 19 DA "C2'" "H2'" sing N N 20 DA "C2'" "H2''" sing N N 21 DA "C1'" N9 sing N N 22 DA "C1'" "H1'" sing N N 23 DA N9 C8 sing Y N 24 DA N9 C4 sing Y N 25 DA C8 N7 doub Y N 26 DA C8 H8 sing N N 27 DA N7 C5 sing Y N 28 DA C5 C6 sing Y N 29 DA C5 C4 doub Y N 30 DA C6 N6 sing N N 31 DA C6 N1 doub Y N 32 DA N6 H61 sing N N 33 DA N6 H62 sing N N 34 DA N1 C2 sing Y N 35 DA C2 N3 doub Y N 36 DA C2 H2 sing N N 37 DA N3 C4 sing Y N 38 DC OP3 P sing N N 39 DC OP3 HOP3 sing N N 40 DC P OP1 doub N N 41 DC P OP2 sing N N 42 DC P "O5'" sing N N 43 DC OP2 HOP2 sing N N 44 DC "O5'" "C5'" sing N N 45 DC "C5'" "C4'" sing N N 46 DC "C5'" "H5'" sing N N 47 DC "C5'" "H5''" sing N N 48 DC "C4'" "O4'" sing N N 49 DC "C4'" "C3'" sing N N 50 DC "C4'" "H4'" sing N N 51 DC "O4'" "C1'" sing N N 52 DC "C3'" "O3'" sing N N 53 DC "C3'" "C2'" sing N N 54 DC "C3'" "H3'" sing N N 55 DC "O3'" "HO3'" sing N N 56 DC "C2'" "C1'" sing N N 57 DC "C2'" "H2'" sing N N 58 DC "C2'" "H2''" sing N N 59 DC "C1'" N1 sing N N 60 DC "C1'" "H1'" sing N N 61 DC N1 C2 sing N N 62 DC N1 C6 sing N N 63 DC C2 O2 doub N N 64 DC C2 N3 sing N N 65 DC N3 C4 doub N N 66 DC C4 N4 sing N N 67 DC C4 C5 sing N N 68 DC N4 H41 sing N N 69 DC N4 H42 sing N N 70 DC C5 C6 doub N N 71 DC C5 H5 sing N N 72 DC C6 H6 sing N N 73 DG OP3 P sing N N 74 DG OP3 HOP3 sing N N 75 DG P OP1 doub N N 76 DG P OP2 sing N N 77 DG P "O5'" sing N N 78 DG OP2 HOP2 sing N N 79 DG "O5'" "C5'" sing N N 80 DG "C5'" "C4'" sing N N 81 DG "C5'" "H5'" sing N N 82 DG "C5'" "H5''" sing N N 83 DG "C4'" "O4'" sing N N 84 DG "C4'" "C3'" sing N N 85 DG "C4'" "H4'" sing N N 86 DG "O4'" "C1'" sing N N 87 DG "C3'" "O3'" sing N N 88 DG "C3'" "C2'" sing N N 89 DG "C3'" "H3'" sing N N 90 DG "O3'" "HO3'" sing N N 91 DG "C2'" "C1'" sing N N 92 DG "C2'" "H2'" sing N N 93 DG "C2'" "H2''" sing N N 94 DG "C1'" N9 sing N N 95 DG "C1'" "H1'" sing N N 96 DG N9 C8 sing Y N 97 DG N9 C4 sing Y N 98 DG C8 N7 doub Y N 99 DG C8 H8 sing N N 100 DG N7 C5 sing Y N 101 DG C5 C6 sing N N 102 DG C5 C4 doub Y N 103 DG C6 O6 doub N N 104 DG C6 N1 sing N N 105 DG N1 C2 sing N N 106 DG N1 H1 sing N N 107 DG C2 N2 sing N N 108 DG C2 N3 doub N N 109 DG N2 H21 sing N N 110 DG N2 H22 sing N N 111 DG N3 C4 sing N N 112 DT OP3 P sing N N 113 DT OP3 HOP3 sing N N 114 DT P OP1 doub N N 115 DT P OP2 sing N N 116 DT P "O5'" sing N N 117 DT OP2 HOP2 sing N N 118 DT "O5'" "C5'" sing N N 119 DT "C5'" "C4'" sing N N 120 DT "C5'" "H5'" sing N N 121 DT "C5'" "H5''" sing N N 122 DT "C4'" "O4'" sing N N 123 DT "C4'" "C3'" sing N N 124 DT "C4'" "H4'" sing N N 125 DT "O4'" "C1'" sing N N 126 DT "C3'" "O3'" sing N N 127 DT "C3'" "C2'" sing N N 128 DT "C3'" "H3'" sing N N 129 DT "O3'" "HO3'" sing N N 130 DT "C2'" "C1'" sing N N 131 DT "C2'" "H2'" sing N N 132 DT "C2'" "H2''" sing N N 133 DT "C1'" N1 sing N N 134 DT "C1'" "H1'" sing N N 135 DT N1 C2 sing N N 136 DT N1 C6 sing N N 137 DT C2 O2 doub N N 138 DT C2 N3 sing N N 139 DT N3 C4 sing N N 140 DT N3 H3 sing N N 141 DT C4 O4 doub N N 142 DT C4 C5 sing N N 143 DT C5 C7 sing N N 144 DT C5 C6 doub N N 145 DT C7 H71 sing N N 146 DT C7 H72 sing N N 147 DT C7 H73 sing N N 148 DT C6 H6 sing N N 149 HOH O H1 sing N N 150 HOH O H2 sing N N 151 SPM N1 C2 sing N N 152 SPM N1 HN11 sing N N 153 SPM N1 HN12 sing N N 154 SPM C2 C3 sing N N 155 SPM C2 H21 sing N N 156 SPM C2 H22 sing N N 157 SPM C3 C4 sing N N 158 SPM C3 H31 sing N N 159 SPM C3 H32 sing N N 160 SPM C4 N5 sing N N 161 SPM C4 H41 sing N N 162 SPM C4 H42 sing N N 163 SPM N5 C6 sing N N 164 SPM N5 HN5 sing N N 165 SPM C6 C7 sing N N 166 SPM C6 H61 sing N N 167 SPM C6 H62 sing N N 168 SPM C7 C8 sing N N 169 SPM C7 H71 sing N N 170 SPM C7 H72 sing N N 171 SPM C8 C9 sing N N 172 SPM C8 H81 sing N N 173 SPM C8 H82 sing N N 174 SPM C9 N10 sing N N 175 SPM C9 H91 sing N N 176 SPM C9 H92 sing N N 177 SPM N10 C11 sing N N 178 SPM N10 HN0 sing N N 179 SPM C11 C12 sing N N 180 SPM C11 H111 sing N N 181 SPM C11 H112 sing N N 182 SPM C12 C13 sing N N 183 SPM C12 H121 sing N N 184 SPM C12 H122 sing N N 185 SPM C13 N14 sing N N 186 SPM C13 H131 sing N N 187 SPM C13 H132 sing N N 188 SPM N14 HN41 sing N N 189 SPM N14 HN42 sing N N 190 # _ndb_struct_conf_na.entry_id 1FQ2 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.260 0.004 0.040 8.282 -15.433 -0.155 1 A_DC1:DG12_B A 1 ? B 12 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.271 -0.089 0.538 9.176 -14.039 -3.064 2 A_DG2:DC11_B A 2 ? B 11 ? 19 1 1 A DC 3 1_555 B DG 10 1_555 0.119 -0.030 0.102 -0.975 -6.730 -1.279 3 A_DC3:DG10_B A 3 ? B 10 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.265 0.089 -0.015 12.742 -7.955 1.004 4 A_DG4:DC9_B A 4 ? B 9 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 -0.027 0.036 -0.017 6.188 -14.589 3.189 5 A_DA5:DT8_B A 5 ? B 8 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.075 0.057 0.000 0.787 -14.955 4.907 6 A_DA6:DT7_B A 6 ? B 7 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.035 0.004 0.069 -0.253 -14.925 2.630 7 A_DT7:DA6_B A 7 ? B 6 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.075 -0.033 -0.087 -1.607 -13.507 3.710 8 A_DT8:DA5_B A 8 ? B 5 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.139 -0.012 0.027 -11.738 -8.776 -2.013 9 A_DC9:DG4_B A 9 ? B 4 ? 19 1 1 A DG 10 1_555 B DC 3 1_555 -0.104 0.028 0.306 4.791 -10.045 2.288 10 A_DG10:DC3_B A 10 ? B 3 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.088 -0.054 0.152 0.721 -17.276 -3.066 11 A_DC11:DG2_B A 11 ? B 2 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.197 0.052 0.230 4.871 -1.936 -1.636 12 A_DG12:DC1_B A 12 ? B 1 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.032 0.010 3.315 -3.345 7.524 32.941 -1.208 -0.600 3.221 13.017 5.787 33.927 1 AA_DC1DG2:DC11DG12_BB A 1 ? B 12 ? A 2 ? B 11 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B DG 10 1_555 0.510 0.663 3.624 3.608 -8.938 43.878 1.757 -0.310 3.461 -11.792 -4.760 44.873 2 AA_DG2DC3:DG10DC11_BB A 2 ? B 11 ? A 3 ? B 10 ? 1 A DC 3 1_555 B DG 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.141 0.550 3.135 1.133 10.439 25.563 -1.372 0.570 3.106 22.423 -2.433 27.602 3 AA_DC3DG4:DC9DG10_BB A 3 ? B 10 ? A 4 ? B 9 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.243 -0.137 3.410 -0.424 2.595 37.832 -0.556 0.317 3.396 3.997 0.653 37.920 4 AA_DG4DA5:DT8DC9_BB A 4 ? B 9 ? A 5 ? B 8 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 0.127 -0.356 3.409 -0.321 -0.002 36.787 -0.563 -0.246 3.408 -0.004 0.509 36.788 5 AA_DA5DA6:DT7DT8_BB A 5 ? B 8 ? A 6 ? B 7 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 -0.019 -0.626 3.259 -0.229 -0.956 32.391 -0.953 -0.006 3.276 -1.712 0.411 32.405 6 AA_DA6DT7:DA6DT7_BB A 6 ? B 7 ? A 7 ? B 6 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.088 -0.439 3.256 1.680 -2.073 33.706 -0.420 0.422 3.268 -3.568 -2.892 33.808 7 AA_DT7DT8:DA5DA6_BB A 7 ? B 6 ? A 8 ? B 5 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.233 -0.301 3.499 0.404 -1.305 42.461 -0.273 0.365 3.504 -1.802 -0.557 42.482 8 AA_DT8DC9:DG4DA5_BB A 8 ? B 5 ? A 9 ? B 4 ? 1 A DC 9 1_555 B DG 4 1_555 A DG 10 1_555 B DC 3 1_555 0.697 0.725 3.085 -4.003 4.369 26.512 0.505 -2.438 3.027 9.379 8.592 27.154 9 AA_DC9DG10:DC3DG4_BB A 9 ? B 4 ? A 10 ? B 3 ? 1 A DG 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.358 0.393 3.425 -2.604 -9.395 41.480 1.537 1.594 3.339 -13.048 3.617 42.561 10 AA_DG10DC11:DG2DC3_BB A 10 ? B 3 ? A 11 ? B 2 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.298 0.172 3.220 -1.023 4.863 33.205 -0.491 0.349 3.220 8.450 1.777 33.564 11 AA_DC11DG12:DC1DG2_BB A 11 ? B 2 ? A 12 ? B 1 ? # _atom_sites.entry_id 1FQ2 _atom_sites.fract_transf_matrix[1][1] 0.039081 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.024499 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.014999 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C MG N O P # loop_