HEADER HYDROLASE 03-SEP-00 1FQ3 TITLE CRYSTAL STRUCTURE OF HUMAN GRANZYME B CAVEAT 1FQ3 NAG C 1 HAS WRONG CHIRALITY AT ATOM C1 NAG D 1 HAS WRONG CAVEAT 2 1FQ3 CHIRALITY AT ATOM C1 COMPND MOL_ID: 1; COMPND 2 MOLECULE: GRANZYME B; COMPND 3 CHAIN: A, B; COMPND 4 EC: 3.4.21.79; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: SPODOPTERA FRUGIPERDA; SOURCE 6 EXPRESSION_SYSTEM_COMMON: FALL ARMYWORM; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 7108; SOURCE 8 EXPRESSION_SYSTEM_CELL_LINE: SF9; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: BACULOVIRUS SYSTEM KEYWDS CHYMOTRYPSIN-LIKE SERINE PROTEINASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR E.ESTEBANEZ-PERPINA,P.FUENTES-PRIOR,D.BELORGEY,H.RUBIN,W.BODE REVDAT 5 03-APR-24 1FQ3 1 REMARK HETSYN REVDAT 4 29-JUL-20 1FQ3 1 CAVEAT COMPND REMARK HET REVDAT 4 2 1 HETNAM FORMUL LINK SITE REVDAT 4 3 1 ATOM REVDAT 3 13-JUL-11 1FQ3 1 VERSN REVDAT 2 24-FEB-09 1FQ3 1 VERSN REVDAT 1 31-JAN-01 1FQ3 0 JRNL AUTH E.ESTEBANEZ-PERPINA,P.FUENTES-PRIOR,D.BELORGEY,M.BRAUN, JRNL AUTH 2 R.KIEFERSAUER,K.MASKOS,R.HUBER,H.RUBIN,W.BODE JRNL TITL CRYSTAL STRUCTURE OF THE CASPASE ACTIVATOR HUMAN GRANZYME B, JRNL TITL 2 A PROTEINASE HIGHLY SPECIFIC FOR AN ASP-P1 RESIDUE. JRNL REF BIOL.CHEM. V. 381 1203 2000 JRNL REFN ISSN 1431-6730 JRNL PMID 11209755 JRNL DOI 10.1515/BC.2000.148 REMARK 2 REMARK 2 RESOLUTION. 3.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 15.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : NULL REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : 32.500 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3582 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.011 REMARK 3 BOND ANGLES (DEGREES) : 1.511 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FQ3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011806. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-MAY-00 REMARK 200 TEMPERATURE (KELVIN) : 289 REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : 2 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA, CCP4 (SCALA) REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11275 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.100 REMARK 200 RESOLUTION RANGE LOW (A) : 15.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.19900 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 3.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 15.00 REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.19900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: CATHEPSIN G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.16 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PEG-8000, AMMONIUM SULFATE, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 20.87000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.76000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.15500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.76000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 20.87000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.15500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER CONSTRUCTED FROM CHAIN A AND CHAIN B NOT RELATED BY A REMARK 300 TWO-FOLD SYMMETRY REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 475 REMARK 475 ZERO OCCUPANCY RESIDUES REMARK 475 THE FOLLOWING RESIDUES WERE MODELED WITH ZERO OCCUPANCY. REMARK 475 THE LOCATION AND PROPERTIES OF THESE RESIDUES MAY NOT REMARK 475 BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 475 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE) REMARK 475 M RES C SSEQI REMARK 475 ARG A 244 REMARK 475 TYR A 245 REMARK 480 REMARK 480 ZERO OCCUPANCY ATOM REMARK 480 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 480 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 480 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 480 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 480 M RES C SSEQI ATOMS REMARK 480 LYS A 23 CG CD CE NZ REMARK 480 HIS A 25 CG ND1 CD2 CE1 NE2 REMARK 480 MET A 34 CG SD CE REMARK 480 TRP A 36 CG CD1 CD2 NE1 CE2 CE3 CZ2 REMARK 480 TRP A 36 CZ3 CH2 REMARK 480 GLN A 37A CG CD OE1 NE2 REMARK 480 LYS A 37B CG CD CE NZ REMARK 480 LYS A 40 CG CD CE NZ REMARK 480 LYS A 86 CE NZ REMARK 480 ARG A 114 CD NE CZ NH1 NH2 REMARK 480 ARG A 116 CZ NH1 NH2 REMARK 480 ASN A 126 CB CG OD1 ND2 REMARK 480 LYS A 127 CB CG CD CE NZ REMARK 480 LYS A 131 CD CE NZ REMARK 480 HIS A 151 CG ND1 CD2 CE1 NE2 REMARK 480 GLU A 164 CB CG CD OE1 OE2 REMARK 480 ARG A 166 CD NE CZ NH1 NH2 REMARK 480 LYS A 167 CD CE NZ REMARK 480 ASP A 170A CB CG OD1 OD2 REMARK 480 LEU A 171 CA REMARK 480 ARG A 172 CB CG CD NE CZ NH1 NH2 REMARK 480 HIS A 173 CG ND1 CD2 CE1 NE2 REMARK 480 SER A 177 OG REMARK 480 GLU A 186 CG CD OE1 OE2 REMARK 480 LYS A 188 CG CD CE NZ REMARK 480 LYS A 188A CD CE NZ REMARK 480 LYS A 192 CG CD CE NZ REMARK 480 LYS A 203 CG CD CE NZ REMARK 480 ARG A 217 CG CD NE CZ NH1 NH2 REMARK 480 CYS A 228 SG REMARK 480 LYS A 230 NZ REMARK 480 LYS A 239 CG CD CE NZ REMARK 480 LYS A 243 CD CE NZ REMARK 480 LYS B 23 CE NZ REMARK 480 ASP B 37 CG OD1 OD2 REMARK 480 GLN B 37A CG CD OE1 NE2 REMARK 480 LYS B 37B CB CG CD CE NZ REMARK 480 LYS B 40 CG CD CE NZ REMARK 480 GLU B 75 CG CD OE1 OE2 REMARK 480 GLN B 76 CD OE1 NE2 REMARK 480 LYS B 111 CD CE NZ REMARK 480 LYS B 113 CD CE NZ REMARK 480 HIS B 151 CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 159 CE NZ REMARK 480 GLU B 164 CB CG CD OE1 OE2 REMARK 480 ARG B 166 CG CD NE CZ NH1 NH2 REMARK 480 LYS B 167 CG CD CE NZ REMARK 480 ARG B 172 CB CG CD NE CZ NH1 NH2 REMARK 480 HIS B 173 CB CG ND1 CD2 CE1 NE2 REMARK 480 LYS B 188 CG CD CE NZ REMARK 480 LYS B 192 CG CD CE NZ REMARK 480 LYS B 203 CG CD CE NZ REMARK 480 LYS B 239 CD CE NZ REMARK 480 LYS B 240 CG CD CE NZ REMARK 480 LYS B 243 CD CE NZ REMARK 480 ARG B 244 NE CZ NH1 NH2 REMARK 480 TYR B 245 C O CB CG CD1 CD2 CE1 REMARK 480 TYR B 245 CE2 CZ OH OXT REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 SER A 38 N - CA - C ANGL. DEV. = 17.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 25 49.23 36.72 REMARK 500 MET A 34 109.61 -166.68 REMARK 500 GLN A 37A 155.72 73.89 REMARK 500 LYS A 37B -42.35 -12.07 REMARK 500 GLN A 48 137.65 -175.45 REMARK 500 ASP A 49 -37.16 -27.31 REMARK 500 HIS A 57 8.28 -68.77 REMARK 500 PRO A 96 -174.81 -53.77 REMARK 500 LYS A 97 17.99 52.55 REMARK 500 ASN A 98 -28.43 -168.24 REMARK 500 SER A 100 -115.64 -42.19 REMARK 500 ASP A 102 82.02 -65.47 REMARK 500 LEU A 105 95.84 -165.33 REMARK 500 SER A 125 139.55 62.70 REMARK 500 ASN A 126 -157.66 75.91 REMARK 500 ALA A 145 156.27 63.41 REMARK 500 LYS A 149 130.81 -176.70 REMARK 500 HIS A 151 95.39 -22.71 REMARK 500 LEU A 155 -176.27 -60.24 REMARK 500 GLN A 156 109.64 -168.64 REMARK 500 VAL A 158 144.66 -179.59 REMARK 500 VAL A 162 84.72 -66.13 REMARK 500 GLN A 163 174.46 -55.04 REMARK 500 GLU A 169 -16.92 -47.34 REMARK 500 ASP A 170A -37.86 76.67 REMARK 500 LEU A 171 44.51 -76.79 REMARK 500 ARG A 172 -60.75 -16.63 REMARK 500 THR A 178 -24.83 -34.24 REMARK 500 LYS A 203 56.15 88.02 REMARK 500 GLN A 210 -12.68 52.14 REMARK 500 SER A 214 -88.15 -104.92 REMARK 500 ARG A 217 140.01 -29.94 REMARK 500 MET A 242 13.54 -54.44 REMARK 500 LYS A 243 -76.22 -152.43 REMARK 500 HIS B 25 50.12 37.06 REMARK 500 GLN B 37A 132.73 49.49 REMARK 500 LYS B 37B 56.35 21.52 REMARK 500 SER B 38 133.14 161.71 REMARK 500 GLN B 48 138.41 -176.81 REMARK 500 ASP B 49 -41.60 -23.75 REMARK 500 HIS B 57 10.28 -68.71 REMARK 500 HIS B 71 -50.97 -120.29 REMARK 500 ASN B 72 79.52 -116.58 REMARK 500 ILE B 73 5.58 -53.32 REMARK 500 GLN B 76 95.44 -46.58 REMARK 500 LYS B 97 -38.81 76.94 REMARK 500 PHE B 99 23.57 41.15 REMARK 500 ASP B 102 75.67 -69.16 REMARK 500 LEU B 105 94.30 -168.94 REMARK 500 PRO B 124 84.73 -64.72 REMARK 500 REMARK 500 THIS ENTRY HAS 63 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR A 32 0.07 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL DBREF 1FQ3 A 16 245 UNP P10144 GRAB_HUMAN 21 247 DBREF 1FQ3 B 16 245 UNP P10144 GRAB_HUMAN 21 247 SEQRES 1 A 227 ILE ILE GLY GLY HIS GLU ALA LYS PRO HIS SER ARG PRO SEQRES 2 A 227 TYR MET ALA TYR LEU MET ILE TRP ASP GLN LYS SER LEU SEQRES 3 A 227 LYS ARG CYS GLY GLY PHE LEU ILE GLN ASP ASP PHE VAL SEQRES 4 A 227 LEU THR ALA ALA HIS CYS TRP GLY SER SER ILE ASN VAL SEQRES 5 A 227 THR LEU GLY ALA HIS ASN ILE LYS GLU GLN GLU PRO THR SEQRES 6 A 227 GLN GLN PHE ILE PRO VAL LYS ARG PRO ILE PRO HIS PRO SEQRES 7 A 227 ALA TYR ASN PRO LYS ASN PHE SER ASN ASP ILE MET LEU SEQRES 8 A 227 LEU GLN LEU GLU ARG LYS ALA LYS ARG THR ARG ALA VAL SEQRES 9 A 227 GLN PRO LEU ARG LEU PRO SER ASN LYS ALA GLN VAL LYS SEQRES 10 A 227 PRO GLY GLN THR CYS SER VAL ALA GLY TRP GLY GLN THR SEQRES 11 A 227 ALA PRO LEU GLY LYS HIS SER HIS THR LEU GLN GLU VAL SEQRES 12 A 227 LYS MET THR VAL GLN GLU ASP ARG LYS CYS GLU SER ASP SEQRES 13 A 227 LEU ARG HIS TYR TYR ASP SER THR ILE GLU LEU CYS VAL SEQRES 14 A 227 GLY ASP PRO GLU ILE LYS LYS THR SER PHE LYS GLY ASP SEQRES 15 A 227 SER GLY GLY PRO LEU VAL CYS ASN LYS VAL ALA GLN GLY SEQRES 16 A 227 ILE VAL SER TYR GLY ARG ASN ASN GLY MET PRO PRO ARG SEQRES 17 A 227 ALA CYS THR LYS VAL SER SER PHE VAL HIS TRP ILE LYS SEQRES 18 A 227 LYS THR MET LYS ARG TYR SEQRES 1 B 227 ILE ILE GLY GLY HIS GLU ALA LYS PRO HIS SER ARG PRO SEQRES 2 B 227 TYR MET ALA TYR LEU MET ILE TRP ASP GLN LYS SER LEU SEQRES 3 B 227 LYS ARG CYS GLY GLY PHE LEU ILE GLN ASP ASP PHE VAL SEQRES 4 B 227 LEU THR ALA ALA HIS CYS TRP GLY SER SER ILE ASN VAL SEQRES 5 B 227 THR LEU GLY ALA HIS ASN ILE LYS GLU GLN GLU PRO THR SEQRES 6 B 227 GLN GLN PHE ILE PRO VAL LYS ARG PRO ILE PRO HIS PRO SEQRES 7 B 227 ALA TYR ASN PRO LYS ASN PHE SER ASN ASP ILE MET LEU SEQRES 8 B 227 LEU GLN LEU GLU ARG LYS ALA LYS ARG THR ARG ALA VAL SEQRES 9 B 227 GLN PRO LEU ARG LEU PRO SER ASN LYS ALA GLN VAL LYS SEQRES 10 B 227 PRO GLY GLN THR CYS SER VAL ALA GLY TRP GLY GLN THR SEQRES 11 B 227 ALA PRO LEU GLY LYS HIS SER HIS THR LEU GLN GLU VAL SEQRES 12 B 227 LYS MET THR VAL GLN GLU ASP ARG LYS CYS GLU SER ASP SEQRES 13 B 227 LEU ARG HIS TYR TYR ASP SER THR ILE GLU LEU CYS VAL SEQRES 14 B 227 GLY ASP PRO GLU ILE LYS LYS THR SER PHE LYS GLY ASP SEQRES 15 B 227 SER GLY GLY PRO LEU VAL CYS ASN LYS VAL ALA GLN GLY SEQRES 16 B 227 ILE VAL SER TYR GLY ARG ASN ASN GLY MET PRO PRO ARG SEQRES 17 B 227 ALA CYS THR LYS VAL SER SER PHE VAL HIS TRP ILE LYS SEQRES 18 B 227 LYS THR MET LYS ARG TYR MODRES 1FQ3 ASN B 65 ASN GLYCOSYLATION SITE MODRES 1FQ3 ASN A 65 ASN GLYCOSYLATION SITE HET NAG C 1 14 HET NAG C 2 14 HET BMA C 3 11 HET NAG D 1 14 HET NAG D 2 14 HET BMA D 3 11 HET SO4 A 800 5 HET SO4 B 900 5 HETNAM NAG 2-ACETAMIDO-2-DEOXY-BETA-D-GLUCOPYRANOSE HETNAM BMA BETA-D-MANNOPYRANOSE HETNAM SO4 SULFATE ION HETSYN NAG N-ACETYL-BETA-D-GLUCOSAMINE; 2-ACETAMIDO-2-DEOXY-BETA- HETSYN 2 NAG D-GLUCOSE; 2-ACETAMIDO-2-DEOXY-D-GLUCOSE; 2-ACETAMIDO- HETSYN 3 NAG 2-DEOXY-GLUCOSE; N-ACETYL-D-GLUCOSAMINE HETSYN BMA BETA-D-MANNOSE; D-MANNOSE; MANNOSE FORMUL 3 NAG 4(C8 H15 N O6) FORMUL 3 BMA 2(C6 H12 O6) FORMUL 5 SO4 2(O4 S 2-) HELIX 1 1 ALA A 55 TRP A 59 5 5 HELIX 2 2 GLU A 164 GLU A 169 1 6 HELIX 3 3 LYS A 230 MET A 242 1 13 HELIX 4 4 ALA B 55 TRP B 59 5 5 HELIX 5 5 GLU B 164 LEU B 171 1 9 HELIX 6 6 LYS B 230 MET B 242 1 13 SHEET 1 A 9 SER A 38 LYS A 40 0 SHEET 2 A 9 ILE A 35 ASP A 37 -1 N ILE A 35 O LYS A 40 SHEET 3 A 9 SER A 63 LEU A 68 -1 N SER A 63 O TRP A 36 SHEET 4 A 9 MET A 30 TYR A 32 -1 O TYR A 32 N THR A 67 SHEET 5 A 9 GLY A 43 GLN A 48 -1 O GLY A 44 N ALA A 31 SHEET 6 A 9 PHE A 51 THR A 54 -1 N PHE A 51 O GLN A 48 SHEET 7 A 9 MET A 104 LEU A 108 -1 N MET A 104 O THR A 54 SHEET 8 A 9 GLN A 81 PRO A 88 -1 N LYS A 86 O GLN A 107 SHEET 9 A 9 SER A 63 LEU A 68 -1 O ILE A 64 N VAL A 85 SHEET 1 B 2 THR A 135 SER A 137 0 SHEET 2 B 2 LYS A 159 THR A 161 -1 N MET A 160 O CYS A 136 SHEET 1 C 3 GLU A 180 LEU A 181 0 SHEET 2 C 3 CYS A 228 THR A 229 -1 N CYS A 228 O LEU A 181 SHEET 3 C 3 ILE A 212 VAL A 213 -1 N ILE A 212 O THR A 229 SHEET 1 D 7 MET B 104 LEU B 108 0 SHEET 2 D 7 GLN B 81 PRO B 88 -1 N LYS B 86 O GLN B 107 SHEET 3 D 7 ILE B 64 LEU B 68 -1 O ILE B 64 N VAL B 85 SHEET 4 D 7 MET B 30 TRP B 36 -1 N TYR B 32 O THR B 67 SHEET 5 D 7 LEU B 39 GLN B 48 -1 O LYS B 40 N ILE B 35 SHEET 6 D 7 PHE B 51 THR B 54 -1 O PHE B 51 N GLN B 48 SHEET 7 D 7 MET B 104 LEU B 108 -1 N MET B 104 O THR B 54 SHEET 1 E 6 LYS B 159 THR B 161 0 SHEET 2 E 6 THR B 135 VAL B 138 -1 O CYS B 136 N MET B 160 SHEET 3 E 6 PRO B 198 VAL B 200 -1 O VAL B 200 N SER B 137 SHEET 4 E 6 ALA B 209 TYR B 215 -1 N GLN B 210 O LEU B 199 SHEET 5 E 6 ALA B 227 THR B 229 -1 O ALA B 227 N SER B 214 SHEET 6 E 6 GLU B 180 LEU B 181 -1 O LEU B 181 N CYS B 228 SSBOND 1 CYS A 42 CYS A 58 1555 1555 2.03 SSBOND 2 CYS A 136 CYS A 201 1555 1555 2.03 SSBOND 3 CYS A 168 CYS A 182 1555 1555 2.02 SSBOND 4 CYS B 42 CYS B 58 1555 1555 2.03 SSBOND 5 CYS B 136 CYS B 201 1555 1555 2.02 SSBOND 6 CYS B 168 CYS B 182 1555 1555 2.02 LINK ND2 ASN A 65 C1 NAG C 1 1555 1555 1.57 LINK ND2 ASN B 65 C1 NAG D 1 1555 1555 1.56 LINK O4 NAG C 1 C1 NAG C 2 1555 1555 1.42 LINK O4 NAG C 2 C1 BMA C 3 1555 1555 1.47 LINK O4 NAG D 1 C1 NAG D 2 1555 1555 1.41 LINK O4 NAG D 2 C1 BMA D 3 1555 1555 1.45 CISPEP 1 PRO A 224A PRO A 225 0 -0.12 CISPEP 2 PRO B 224A PRO B 225 0 -0.45 CRYST1 41.740 114.310 135.520 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023958 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008748 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007379 0.00000