HEADER VIRAL PROTEIN/IMMUNE SYSTEM 17-JAN-94 1FRG TITLE CRYSTAL STRUCTURE, SEQUENCE, AND EPITOPE MAPPING OF A PEPTIDE COMPLEX TITLE 2 OF AN ANTI-INFLUENZA HA PEPTIDE ANTIBODY FAB 26(SLASH)9: FINE-TUNING TITLE 3 ANTIBODY SPECIFICITY COMPND MOL_ID: 1; COMPND 2 MOLECULE: IGG2A 26/9 FAB (LIGHT CHAIN); COMPND 3 CHAIN: L; COMPND 4 ENGINEERED: YES; COMPND 5 MOL_ID: 2; COMPND 6 MOLECULE: IGG2A 26/9 FAB (HEAVY CHAIN); COMPND 7 CHAIN: H; COMPND 8 ENGINEERED: YES; COMPND 9 MOL_ID: 3; COMPND 10 MOLECULE: INFLUENZA HEMAGGLUTININ HA1 (STRAIN X47) (RESIDUES 101 - COMPND 11 108); COMPND 12 CHAIN: P; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 MOL_ID: 2; SOURCE 6 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 7 ORGANISM_COMMON: MOUSE; SOURCE 8 ORGANISM_TAXID: 10090; SOURCE 9 MOL_ID: 3 KEYWDS IMMUNOGLOBULIN/VIRUS HEMAGGLUTININ, VIRAL PROTEIN-IMMUNE SYSTEM KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.E.A.CHURCHILL,I.A.WILSON REVDAT 5 05-JUN-24 1FRG 1 REMARK SEQADV LINK REVDAT 4 18-SEP-13 1FRG 1 SOURCE VERSN REVDAT 3 25-AUG-09 1FRG 1 SOURCE REVDAT 2 24-FEB-09 1FRG 1 VERSN REVDAT 1 31-MAY-94 1FRG 0 JRNL AUTH M.E.CHURCHILL,E.A.STURA,C.PINILLA,J.R.APPEL,R.A.HOUGHTEN, JRNL AUTH 2 D.H.KONO,R.S.BALDERAS,G.G.FIESER,U.SCHULZE-GAHMEN,I.A.WILSON JRNL TITL CRYSTAL STRUCTURE OF A PEPTIDE COMPLEX OF ANTI-INFLUENZA JRNL TITL 2 PEPTIDE ANTIBODY FAB 26/9. COMPARISON OF TWO DIFFERENT JRNL TITL 3 ANTIBODIES BOUND TO THE SAME PEPTIDE ANTIGEN. JRNL REF J.MOL.BIOL. V. 241 534 1994 JRNL REFN ISSN 0022-2836 JRNL PMID 7520084 JRNL DOI 10.1006/JMBI.1994.1530 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH U.SCHULZE-GAHMEN,J.M.RINI,I.A.WILSON REMARK 1 TITL DETAILED ANALYSIS OF THE FREE AND BOUND CONFORMATIONS OF AN REMARK 1 TITL 2 ANTIBODY: X-RAY STRUCTURES OF FAB 17(SLASH)9 AND THREE REMARK 1 TITL 3 DIFFERENT FAB-PEPTIDE COMPLEXES REMARK 1 REF J.MOL.BIOL. V. 234 1098 1993 REMARK 1 REFN ISSN 0022-2836 REMARK 1 REFERENCE 2 REMARK 1 AUTH J.M.RINI,U.SCHULZE-GAHMEN,I.A.WILSON REMARK 1 TITL STRUCTURAL EVIDENCE FOR INDUCED FIT AS A MECHANISM FOR REMARK 1 TITL 2 ANTIBODY-ANTIGEN RECOGNITION REMARK 1 REF SCIENCE V. 255 959 1992 REMARK 1 REFN ISSN 0036-8075 REMARK 1 REFERENCE 3 REMARK 1 AUTH U.SCHULZE-GAHMEN,J.M.RINI,J.AREVALO,E.A.STURA,J.H.KENTEN, REMARK 1 AUTH 2 I.A.WILSON REMARK 1 TITL PRELIMINARY CRYSTALLOGRAPHIC DATA, PRIMARY SEQUENCE, AND REMARK 1 TITL 2 BINDING DATA FOR THE ANTI-PEPTIDE FAB AND ITS COMPLEX WITH A REMARK 1 TITL 3 SYNTHETIC PEPTIDE FROM INFLUENZA HEMAGGLUTININ REMARK 1 REF J.BIOL.CHEM. V. 263 17100 1988 REMARK 1 REFN ISSN 0021-9258 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 8.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 NUMBER OF REFLECTIONS : NULL REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : NULL REMARK 3 FREE R VALUE TEST SET SELECTION : NULL REMARK 3 R VALUE (WORKING SET) : 0.190 REMARK 3 FREE R VALUE : NULL REMARK 3 FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3426 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 1 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.015 REMARK 3 BOND ANGLES (DEGREES) : 3.480 REMARK 3 DIHEDRAL ANGLES (DEGREES) : 28.40 REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : NULL REMARK 3 TOPOLOGY FILE 1 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FRG COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173383. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : NULL REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : NULL REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : NULL REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : NULL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : NULL REMARK 200 RESOLUTION RANGE LOW (A) : NULL REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: X-PLOR REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 57.35 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.88 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: NULL REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.65000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 57.55000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 36.65000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 33.30000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 57.55000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 19660 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: L, H, P REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS L 43 NE2 HIS L 43 CD2 -0.084 REMARK 500 HIS L 100 NE2 HIS L 100 CD2 -0.082 REMARK 500 HIS L 204 NE2 HIS L 204 CD2 -0.085 REMARK 500 HIS H 256 NE2 HIS H 256 CD2 -0.072 REMARK 500 HIS H 388 NE2 HIS H 388 CD2 -0.069 REMARK 500 HIS H 423 NE2 HIS H 423 CD2 -0.067 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG L 35 NE - CZ - NH1 ANGL. DEV. = 3.3 DEGREES REMARK 500 TRP L 41 CD1 - CG - CD2 ANGL. DEV. = 7.4 DEGREES REMARK 500 TRP L 41 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR L 42 CB - CG - CD2 ANGL. DEV. = -5.1 DEGREES REMARK 500 TRP L 56 CD1 - CG - CD2 ANGL. DEV. = 6.3 DEGREES REMARK 500 TRP L 56 CE2 - CD2 - CG ANGL. DEV. = -6.3 DEGREES REMARK 500 LEU L 142 CA - CB - CG ANGL. DEV. = 13.9 DEGREES REMARK 500 TRP L 154 CD1 - CG - CD2 ANGL. DEV. = 7.0 DEGREES REMARK 500 TRP L 154 CE2 - CD2 - CG ANGL. DEV. = -5.8 DEGREES REMARK 500 ARG L 161 NE - CZ - NH1 ANGL. DEV. = 4.5 DEGREES REMARK 500 ARG L 161 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TRP L 169 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP L 169 CB - CG - CD1 ANGL. DEV. = -9.2 DEGREES REMARK 500 TRP L 169 CE2 - CD2 - CG ANGL. DEV. = -6.4 DEGREES REMARK 500 TRP L 169 CG - CD2 - CE3 ANGL. DEV. = 6.7 DEGREES REMARK 500 CYS L 200 CA - CB - SG ANGL. DEV. = -11.2 DEGREES REMARK 500 GLU H 218 CA - CB - CG ANGL. DEV. = 14.4 DEGREES REMARK 500 TRP H 253 CD1 - CG - CD2 ANGL. DEV. = 5.1 DEGREES REMARK 500 TRP H 253 CE2 - CD2 - CG ANGL. DEV. = -4.9 DEGREES REMARK 500 ARG H 255 CB - CG - CD ANGL. DEV. = -17.7 DEGREES REMARK 500 TRP H 264 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP H 264 CG - CD1 - NE1 ANGL. DEV. = -6.3 DEGREES REMARK 500 TRP H 264 CE2 - CD2 - CG ANGL. DEV. = -5.6 DEGREES REMARK 500 TYR H 276 CB - CG - CD1 ANGL. DEV. = -4.6 DEGREES REMARK 500 ARG H 284 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG H 289 NE - CZ - NH2 ANGL. DEV. = -3.9 DEGREES REMARK 500 TYR H 311 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 ARG H 315 NE - CZ - NH2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TYR H 319 CB - CG - CD2 ANGL. DEV. = -4.1 DEGREES REMARK 500 TRP H 327 CD1 - CG - CD2 ANGL. DEV. = 6.9 DEGREES REMARK 500 TRP H 327 CE2 - CD2 - CG ANGL. DEV. = -5.5 DEGREES REMARK 500 TRP H 378 CD1 - CG - CD2 ANGL. DEV. = 7.1 DEGREES REMARK 500 TRP H 378 CE2 - CD2 - CG ANGL. DEV. = -5.9 DEGREES REMARK 500 TYR H 399 CB - CG - CD1 ANGL. DEV. = -4.5 DEGREES REMARK 500 TRP H 412 CD1 - CG - CD2 ANGL. DEV. = 6.7 DEGREES REMARK 500 TRP H 412 CE2 - CD2 - CG ANGL. DEV. = -5.4 DEGREES REMARK 500 CYS H 419 CA - CB - SG ANGL. DEV. = -11.2 DEGREES REMARK 500 LYS H 433 CA - CB - CG ANGL. DEV. = 15.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA L 57 -26.34 67.82 REMARK 500 PRO L 125 154.89 -42.31 REMARK 500 SER L 133 32.14 -73.63 REMARK 500 ASP L 157 54.92 31.87 REMARK 500 SER L 197 95.67 57.73 REMARK 500 THR L 206 4.34 -64.81 REMARK 500 LYS H 260 -11.63 68.21 REMARK 500 GLU H 306 13.82 -69.03 REMARK 500 THR H 356 18.28 56.97 REMARK 500 SER H 358 -35.46 -34.46 REMARK 500 SER H 380 -12.87 59.42 REMARK 500 PRO H 391 157.95 -49.53 REMARK 500 ASP H 397 -5.95 69.67 REMARK 500 ALA H 425 -5.80 -49.69 REMARK 500 SER H 426 12.00 -141.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 TYR L 92 0.08 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 600 REMARK 600 HETEROGEN REMARK 600 REMARK 600 ONE BOUND WATER IS INCLUDED IN THE PEPTIDE BINDING SITE OF REMARK 600 THE FAB. REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACE P 1 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH2 P 10 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1HIM RELATED DB: PDB REMARK 900 RELATED ID: 1HIN RELATED DB: PDB REMARK 900 RELATED ID: 1IFH RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE LIGHT CHAIN IS NUMBERED AS CHAIN L 1 - 217. THE HEAVY REMARK 999 CHAIN IS NUMBERED AS CHAIN H 218 - 437. THE PEPTIDE IS REMARK 999 NUMBERED AS CHAIN P 1 - 9. DBREF 1FRG L 1 217 PIR A31790 A31790 1 217 DBREF 1FRG H 218 437 GB 533229 AAA38230 1 219 DBREF 1FRG P 1 10 PDB 1FRG 1FRG 1 10 SEQADV 1FRG LYS L 24 PIR A31790 THR 24 CONFLICT SEQADV 1FRG ARG L 35 PIR A31790 GLN 35 CONFLICT SEQADV 1FRG PHE L 38 PIR A31790 TYR 38 CONFLICT SEQADV 1FRG HIS L 43 PIR A31790 GLN 43 CONFLICT SEQADV 1FRG LEU L 52 PIR A31790 VAL 52 CONFLICT SEQADV 1FRG SER L 69 PIR A31790 THR 69 CONFLICT SEQADV 1FRG THR L 82 PIR A31790 SER 82 CONFLICT SEQADV 1FRG ILE L 91 PIR A31790 VAL 91 CONFLICT SEQADV 1FRG HIS L 100 PIR A31790 ASN 100 CONFLICT SEQADV 1FRG ALA L 106 PIR A31790 GLY 106 CONFLICT SEQADV 1FRG LEU H 220 GB 533229 GLN 3 CONFLICT SEQADV 1FRG PHE H 234 GB 533229 SER 17 CONFLICT SEQADV 1FRG THR H 245 GB 533229 SER 28 CONFLICT SEQADV 1FRG PHE H 249 GB 533229 TYR 32 CONFLICT SEQADV 1FRG HIS H 256 GB 533229 GLN 39 CONFLICT SEQADV 1FRG GLN H 278 GB 533229 PRO 61 CONFLICT SEQADV 1FRG PHE H 297 GB 533229 TYR 80 CONFLICT SEQADV 1FRG GLU H 299 GB 533229 GLN 82 CONFLICT SEQADV 1FRG THR H 301 GB 533229 SER 84 CONFLICT SEQADV 1FRG ALA H 308 GB 533229 SER 91 CONFLICT SEQADV 1FRG GLY H 309 GB 533229 ALA 92 CONFLICT SEQADV 1FRG LEU H 310 GB 533229 MET 93 CONFLICT SEQADV 1FRG LYS H 322 GB 533229 ASN 105 CONFLICT SEQADV 1FRG ARG H 329 GB 533229 GLN 112 CONFLICT SEQADV 1FRG PRO H 436 GB 533229 INSERTION SEQRES 1 L 217 ASP ILE VAL MET THR GLN SER PRO SER SER LEU THR VAL SEQRES 2 L 217 THR ALA GLY GLU LYS VAL THR MET SER CYS LYS SER SER SEQRES 3 L 217 GLN SER LEU PHE ASN SER GLY LYS ARG LYS ASN PHE LEU SEQRES 4 L 217 THR TRP TYR HIS GLN LYS PRO GLY GLN PRO PRO LYS LEU SEQRES 5 L 217 LEU ILE TYR TRP ALA SER THR ARG GLU SER GLY VAL PRO SEQRES 6 L 217 ASP ARG PHE SER GLY SER GLY SER GLY THR ASP PHE THR SEQRES 7 L 217 LEU THR ILE THR SER VAL GLN ALA GLU ASP LEU ALA ILE SEQRES 8 L 217 TYR TYR CYS GLN ASN ASP TYR SER HIS PRO LEU THR PHE SEQRES 9 L 217 GLY ALA GLY THR LYS LEU GLU LEU LYS ARG ALA ASP ALA SEQRES 10 L 217 ALA PRO THR VAL SER ILE PHE PRO PRO SER SER GLU GLN SEQRES 11 L 217 LEU THR SER GLY GLY ALA SER VAL VAL CYS PHE LEU ASN SEQRES 12 L 217 ASN PHE TYR PRO LYS ASP ILE ASN VAL LYS TRP LYS ILE SEQRES 13 L 217 ASP GLY SER GLU ARG GLN ASN GLY VAL LEU ASN SER TRP SEQRES 14 L 217 THR ASP GLN ASP SER LYS ASP SER THR TYR SER MET SER SEQRES 15 L 217 SER THR LEU THR LEU THR LYS ASP GLU TYR GLU ARG HIS SEQRES 16 L 217 ASN SER TYR THR CYS GLU ALA THR HIS LYS THR SER THR SEQRES 17 L 217 SER PRO ILE VAL LYS SER PHE ASN ARG SEQRES 1 H 220 GLU VAL LEU LEU VAL GLU SER GLY GLY ASP LEU VAL LYS SEQRES 2 H 220 PRO GLY GLY PHE LEU LYS LEU SER CYS ALA ALA SER GLY SEQRES 3 H 220 PHE THR PHE SER SER PHE GLY MET SER TRP VAL ARG HIS SEQRES 4 H 220 THR PRO ASP LYS ARG LEU GLU TRP VAL ALA THR ILE SER SEQRES 5 H 220 ASN GLY GLY GLY TYR THR TYR TYR GLN ASP SER VAL LYS SEQRES 6 H 220 GLY ARG PHE THR ILE SER ARG ASP ASN ALA LYS ASN THR SEQRES 7 H 220 LEU PHE LEU GLU MET THR SER LEU LYS SER GLU ASP ALA SEQRES 8 H 220 GLY LEU TYR TYR CYS ALA ARG ARG GLU ARG TYR ASP GLU SEQRES 9 H 220 LYS GLY PHE ALA TYR TRP GLY ARG GLY THR LEU VAL THR SEQRES 10 H 220 VAL SER ALA ALA LYS THR THR ALA PRO SER VAL TYR PRO SEQRES 11 H 220 LEU ALA PRO VAL CYS GLY ASP THR THR GLY SER SER VAL SEQRES 12 H 220 THR LEU GLY CYS LEU VAL LYS GLY TYR PHE PRO GLU PRO SEQRES 13 H 220 VAL THR LEU THR TRP ASN SER GLY SER LEU SER SER GLY SEQRES 14 H 220 VAL HIS THR PHE PRO ALA VAL LEU GLN SER ASP LEU TYR SEQRES 15 H 220 THR LEU SER SER SER VAL THR VAL THR SER SER THR TRP SEQRES 16 H 220 PRO SER GLN SER ILE THR CYS ASN VAL ALA HIS PRO ALA SEQRES 17 H 220 SER SER THR LYS VAL ASP LYS LYS ILE GLU PRO ARG SEQRES 1 P 10 ACE ASP VAL PRO ASP TYR ALA SER LEU NH2 HET ACE P 1 3 HET NH2 P 10 1 HETNAM ACE ACETYL GROUP HETNAM NH2 AMINO GROUP FORMUL 3 ACE C2 H4 O FORMUL 3 NH2 H2 N FORMUL 4 HOH *(H2 O) HELIX 1 1 GLN L 85 LEU L 89 5 5 HELIX 2 2 SER L 127 SER L 133 1 7 HELIX 3 3 LYS L 189 GLU L 193 1 5 HELIX 4 4 THR H 245 PHE H 249 5 5 HELIX 5 5 LYS H 304 ALA H 308 5 5 HELIX 6 6 GLY H 353 GLY H 357 5 5 HELIX 7 7 SER H 380 SER H 382 5 3 HELIX 8 8 PRO H 424 SER H 427 5 4 SHEET 1 A 4 MET L 4 SER L 7 0 SHEET 2 A 4 VAL L 19 SER L 25 -1 N SER L 22 O SER L 7 SHEET 3 A 4 ASP L 76 ILE L 81 -1 O PHE L 77 N CYS L 23 SHEET 4 A 4 PHE L 68 SER L 73 -1 O SER L 69 N THR L 80 SHEET 1 B 6 SER L 10 VAL L 13 0 SHEET 2 B 6 THR L 108 LEU L 112 1 O LYS L 109 N LEU L 11 SHEET 3 B 6 ILE L 91 ASN L 96 -1 N TYR L 92 O THR L 108 SHEET 4 B 6 LEU L 39 GLN L 44 -1 N THR L 40 O GLN L 95 SHEET 5 B 6 PRO L 50 TYR L 55 -1 O LYS L 51 N HIS L 43 SHEET 6 B 6 THR L 59 ARG L 60 -1 O THR L 59 N TYR L 55 SHEET 1 C 4 THR L 120 PHE L 124 0 SHEET 2 C 4 GLY L 135 PHE L 145 -1 O VAL L 139 N PHE L 124 SHEET 3 C 4 TYR L 179 THR L 188 -1 N TYR L 179 O PHE L 145 SHEET 4 C 4 VAL L 165 TRP L 169 -1 N LEU L 166 O THR L 184 SHEET 1 D 4 SER L 159 ARG L 161 0 SHEET 2 D 4 ILE L 150 ILE L 156 -1 O TRP L 154 N ARG L 161 SHEET 3 D 4 TYR L 198 HIS L 204 -1 N THR L 199 O LYS L 155 SHEET 4 D 4 ILE L 211 PHE L 215 -1 O ILE L 211 N ALA L 202 SHEET 1 E 4 LEU H 220 SER H 224 0 SHEET 2 E 4 PHE H 234 SER H 242 -1 N SER H 238 O SER H 224 SHEET 3 E 4 THR H 295 THR H 301 -1 N LEU H 296 O CYS H 239 SHEET 4 E 4 PHE H 285 ASP H 290 -1 O THR H 286 N GLU H 299 SHEET 1 F 5 THR H 275 TYR H 277 0 SHEET 2 F 5 LEU H 262 ILE H 268 -1 O THR H 267 N TYR H 276 SHEET 3 F 5 MET H 251 HIS H 256 -1 O MET H 251 N ILE H 268 SHEET 4 F 5 GLY H 309 ARG H 315 -1 O LEU H 310 N HIS H 256 SHEET 5 F 5 TYR H 326 TRP H 327 -1 O TYR H 326 N ARG H 315 SHEET 1 G 6 THR H 275 TYR H 277 0 SHEET 2 G 6 LEU H 262 ILE H 268 -1 O THR H 267 N TYR H 276 SHEET 3 G 6 MET H 251 HIS H 256 -1 O MET H 251 N ILE H 268 SHEET 4 G 6 GLY H 309 ARG H 315 -1 O LEU H 310 N HIS H 256 SHEET 5 G 6 THR H 331 VAL H 335 -1 O THR H 331 N TYR H 311 SHEET 6 G 6 LEU H 228 VAL H 229 1 N VAL H 229 O THR H 334 SHEET 1 H 4 SER H 344 LEU H 348 0 SHEET 2 H 4 SER H 359 TYR H 369 -1 O GLY H 363 N LEU H 348 SHEET 3 H 4 LEU H 398 THR H 408 -1 N TYR H 399 O TYR H 369 SHEET 4 H 4 VAL H 387 GLN H 395 -1 N HIS H 388 O SER H 404 SHEET 1 I 3 THR H 375 TRP H 378 0 SHEET 2 I 3 THR H 418 HIS H 423 -1 N ASN H 420 O THR H 377 SHEET 3 I 3 THR H 428 LYS H 433 -1 O THR H 428 N HIS H 423 SSBOND 1 CYS L 23 CYS L 94 1555 1555 2.32 SSBOND 2 CYS L 140 CYS L 200 1555 1555 2.38 SSBOND 3 CYS H 239 CYS H 313 1555 1555 2.35 SSBOND 4 CYS H 364 CYS H 419 1555 1555 2.51 LINK C ACE P 1 N ASP P 2 1555 1555 1.33 LINK C LEU P 9 N NH2 P 10 1555 1555 1.33 CISPEP 1 SER L 7 PRO L 8 0 8.56 CISPEP 2 HIS L 100 PRO L 101 0 -16.10 CISPEP 3 TYR L 146 PRO L 147 0 -9.85 CISPEP 4 PHE H 370 PRO H 371 0 -13.11 CISPEP 5 GLU H 372 PRO H 373 0 -8.67 CISPEP 6 TRP H 412 PRO H 413 0 16.74 SITE 1 AC1 1 ASN H 270 SITE 1 AC2 1 LEU P 9 CRYST1 66.600 115.100 73.300 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015015 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008688 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013643 0.00000