HEADER SIGNAL RECOGNITION PARTICLE RECEPTOR 20-NOV-96 1FTS TITLE SIGNAL RECOGNITION PARTICLE RECEPTOR FROM E. COLI COMPND MOL_ID: 1; COMPND 2 MOLECULE: FTSY; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: NG-DOMAIN RESIDUES 197 - 497; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 562; SOURCE 4 CELLULAR_LOCATION: CYTOPLASM, CYTOPLASMA MEMBRANE; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI BL21; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21; SOURCE 8 EXPRESSION_SYSTEM_CELLULAR_LOCATION: CYTOPLASM; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET9 KEYWDS SIGNAL RECOGNITION PARTICLE RECEPTOR, GTPASE, PROTEIN TARGETING EXPDTA X-RAY DIFFRACTION AUTHOR G.MONTOYA,C.SVENSSON,J.LUIRINK,I.SINNING REVDAT 3 07-FEB-24 1FTS 1 REMARK REVDAT 2 24-FEB-09 1FTS 1 VERSN REVDAT 1 20-MAY-98 1FTS 0 JRNL AUTH G.MONTOYA,C.SVENSSON,J.LUIRINK,I.SINNING JRNL TITL CRYSTAL STRUCTURE OF THE NG DOMAIN FROM THE JRNL TITL 2 SIGNAL-RECOGNITION PARTICLE RECEPTOR FTSY. JRNL REF NATURE V. 385 365 1997 JRNL REFN ISSN 0028-0836 JRNL PMID 9002525 JRNL DOI 10.1038/385365A0 REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH G.MONTOYA,C.SVENSSON,J.LUIRINK,I.SINNING REMARK 1 TITL CRYSTAL STRUCTURE OF THE NG DOMAIN FROM THE REMARK 1 TITL 2 SIGNAL-RECOGNITION PARTICLE RECEPTOR FTSY REMARK 1 REF NATURE V. 385 365 1997 REMARK 1 REFN ISSN 0028-0836 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.4 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 7.50 REMARK 3 DATA CUTOFF (SIGMA(F)) : 2.000 REMARK 3 DATA CUTOFF HIGH (ABS(F)) : NULL REMARK 3 DATA CUTOFF LOW (ABS(F)) : NULL REMARK 3 COMPLETENESS (WORKING+TEST) (%) : 98.0 REMARK 3 NUMBER OF REFLECTIONS : 15161 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : YES REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING SET) : 0.222 REMARK 3 FREE R VALUE : 0.280 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF FREE R VALUE : NULL REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : NULL REMARK 3 BIN RESOLUTION RANGE HIGH (A) : NULL REMARK 3 BIN RESOLUTION RANGE LOW (A) : NULL REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : NULL REMARK 3 REFLECTIONS IN BIN (WORKING SET) : NULL REMARK 3 BIN R VALUE (WORKING SET) : NULL REMARK 3 BIN FREE R VALUE : NULL REMARK 3 BIN FREE R VALUE TEST SET SIZE (%) : NULL REMARK 3 BIN FREE R VALUE TEST SET COUNT : NULL REMARK 3 ESTIMATED ERROR OF BIN FREE R VALUE : NULL REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2261 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.00 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM SIGMAA (A) : NULL REMARK 3 LOW RESOLUTION CUTOFF (A) : NULL REMARK 3 REMARK 3 CROSS-VALIDATED ESTIMATED COORDINATE ERROR. REMARK 3 ESD FROM C-V LUZZATI PLOT (A) : NULL REMARK 3 ESD FROM C-V SIGMAA (A) : NULL REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES. REMARK 3 BOND LENGTHS (A) : 0.010 REMARK 3 BOND ANGLES (DEGREES) : 1.560 REMARK 3 DIHEDRAL ANGLES (DEGREES) : NULL REMARK 3 IMPROPER ANGLES (DEGREES) : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL MODEL : NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. RMS SIGMA REMARK 3 MAIN-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN BOND (A**2) : NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE (A**2) : NULL ; NULL REMARK 3 REMARK 3 NCS MODEL : NULL REMARK 3 REMARK 3 NCS RESTRAINTS. RMS SIGMA/WEIGHT REMARK 3 GROUP 1 POSITIONAL (A) : NULL ; NULL REMARK 3 GROUP 1 B-FACTOR (A**2) : NULL ; NULL REMARK 3 REMARK 3 PARAMETER FILE 1 : PARAM19X.PRO REMARK 3 PARAMETER FILE 2 : NULL REMARK 3 PARAMETER FILE 3 : NULL REMARK 3 TOPOLOGY FILE 1 : TOPH19X.PRO REMARK 3 TOPOLOGY FILE 2 : NULL REMARK 3 TOPOLOGY FILE 3 : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FTS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY BNL. REMARK 100 THE DEPOSITION ID IS D_1000173418. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : JUN-96 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.99 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MARRESEARCH REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 15365 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 30.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.0 REMARK 200 DATA REDUNDANCY : 4.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03800 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 15.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: NULL REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MIRAS REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 38.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: VAPOR DIFFUSION, PH 6.0, VAPOR REMARK 280 DIFFUSION REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.78850 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 239 34.16 75.55 REMARK 500 LYS A 259 11.36 -147.16 REMARK 500 ASP A 283 44.62 -96.70 REMARK 500 LYS A 390 -73.64 -31.13 REMARK 500 ASP A 408 117.16 -163.96 REMARK 500 REMARK 500 REMARK: NULL DBREF 1FTS A 201 495 UNP P10121 FTSY_ECOLI 201 495 SEQRES 1 A 295 ARG SER LEU LEU LYS THR LYS GLU ASN LEU GLY SER GLY SEQRES 2 A 295 PHE ILE SER LEU PHE ARG GLY LYS LYS ILE ASP ASP ASP SEQRES 3 A 295 LEU PHE GLU GLU LEU GLU GLU GLN LEU LEU ILE ALA ASP SEQRES 4 A 295 VAL GLY VAL GLU THR THR ARG LYS ILE ILE THR ASN LEU SEQRES 5 A 295 THR GLU GLY ALA SER ARG LYS GLN LEU ARG ASP ALA GLU SEQRES 6 A 295 ALA LEU TYR GLY LEU LEU LYS GLU GLU MET GLY GLU ILE SEQRES 7 A 295 LEU ALA LYS VAL ASP GLU PRO LEU ASN VAL GLU GLY LYS SEQRES 8 A 295 ALA PRO PHE VAL ILE LEU MET VAL GLY VAL ASN GLY VAL SEQRES 9 A 295 GLY LYS THR THR THR ILE GLY LYS LEU ALA ARG GLN PHE SEQRES 10 A 295 GLU GLN GLN GLY LYS SER VAL MET LEU ALA ALA GLY ASP SEQRES 11 A 295 THR PHE ARG ALA ALA ALA VAL GLU GLN LEU GLN VAL TRP SEQRES 12 A 295 GLY GLN ARG ASN ASN ILE PRO VAL ILE ALA GLN HIS THR SEQRES 13 A 295 GLY ALA ASP SER ALA SER VAL ILE PHE ASP ALA ILE GLN SEQRES 14 A 295 ALA ALA LYS ALA ARG ASN ILE ASP VAL LEU ILE ALA ASP SEQRES 15 A 295 THR ALA GLY ARG LEU GLN ASN LYS SER HIS LEU MET GLU SEQRES 16 A 295 GLU LEU LYS LYS ILE VAL ARG VAL MET LYS LYS LEU ASP SEQRES 17 A 295 VAL GLU ALA PRO HIS GLU VAL MET LEU THR ILE ASP ALA SEQRES 18 A 295 SER THR GLY GLN ASN ALA VAL SER GLN ALA LYS LEU PHE SEQRES 19 A 295 HIS GLU ALA VAL GLY LEU THR GLY ILE THR LEU THR LYS SEQRES 20 A 295 LEU ASP GLY THR ALA LYS GLY GLY VAL ILE PHE SER VAL SEQRES 21 A 295 ALA ASP GLN PHE GLY ILE PRO ILE ARG TYR ILE GLY VAL SEQRES 22 A 295 GLY GLU ARG ILE GLU ASP LEU ARG PRO PHE LYS ALA ASP SEQRES 23 A 295 ASP PHE ILE GLU ALA LEU PHE ALA ARG HELIX 1 1 THR A 206 GLU A 208 5 3 HELIX 2 2 GLY A 211 PHE A 218 5 8 HELIX 3 3 ASP A 225 ILE A 237 1 13 HELIX 4 4 VAL A 242 SER A 257 1 16 HELIX 5 5 ALA A 264 VAL A 282 5 19 HELIX 6 6 LYS A 306 GLN A 320 1 15 HELIX 7 7 ALA A 334 ARG A 346 1 13 HELIX 8 8 SER A 360 ALA A 373 1 14 HELIX 9 9 LEU A 387 LYS A 406 5 20 HELIX 10 10 ALA A 421 ALA A 437 5 17 HELIX 11 11 GLY A 454 PHE A 464 5 11 HELIX 12 12 ILE A 477 ASP A 479 5 3 HELIX 13 13 ALA A 485 PHE A 493 1 9 SHEET 1 A 7 LEU A 480 PRO A 482 0 SHEET 2 A 7 ILE A 468 GLY A 472 -1 N ILE A 471 O ARG A 481 SHEET 3 A 7 GLY A 442 THR A 446 1 N ILE A 443 O ARG A 469 SHEET 4 A 7 GLU A 414 ASP A 420 1 N LEU A 417 O GLY A 442 SHEET 5 A 7 PHE A 294 VAL A 299 1 N LEU A 297 O GLU A 414 SHEET 6 A 7 VAL A 378 ASP A 382 1 N LEU A 379 O PHE A 294 SHEET 7 A 7 VAL A 324 ALA A 327 1 N MET A 325 O VAL A 378 CISPEP 1 ALA A 292 PRO A 293 0 -1.03 CISPEP 2 ALA A 411 PRO A 412 0 0.05 CRYST1 32.559 79.577 59.206 90.00 94.45 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.030713 0.000000 0.002390 0.00000 SCALE2 0.000000 0.012566 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016941 0.00000