data_1FUF # _entry.id 1FUF # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.385 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 1FUF pdb_00001fuf 10.2210/pdb1fuf/pdb NDB AR0029 ? ? RCSB RCSB011912 ? ? WWPDB D_1000011912 ? ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2001-11-09 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2018-01-31 5 'Structure model' 1 4 2024-02-07 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Experimental preparation' 4 5 'Structure model' 'Data collection' 5 5 'Structure model' 'Database references' 6 5 'Structure model' 'Derived calculations' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' exptl_crystal_grow 2 5 'Structure model' chem_comp_atom 3 5 'Structure model' chem_comp_bond 4 5 'Structure model' database_2 5 5 'Structure model' pdbx_struct_conn_angle 6 5 'Structure model' struct_conn 7 5 'Structure model' struct_conn_type 8 5 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_exptl_crystal_grow.temp' 2 5 'Structure model' '_database_2.pdbx_DOI' 3 5 'Structure model' '_database_2.pdbx_database_accession' 4 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 5 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 6 5 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 7 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 8 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 9 5 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 10 5 'Structure model' '_pdbx_struct_conn_angle.value' 11 5 'Structure model' '_struct_conn.conn_type_id' 12 5 'Structure model' '_struct_conn.id' 13 5 'Structure model' '_struct_conn.pdbx_dist_value' 14 5 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 15 5 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 16 5 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 17 5 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 18 5 'Structure model' '_struct_conn.ptnr1_label_asym_id' 19 5 'Structure model' '_struct_conn.ptnr1_label_atom_id' 20 5 'Structure model' '_struct_conn.ptnr1_label_comp_id' 21 5 'Structure model' '_struct_conn.ptnr1_label_seq_id' 22 5 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 23 5 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 24 5 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 25 5 'Structure model' '_struct_conn.ptnr2_label_asym_id' 26 5 'Structure model' '_struct_conn.ptnr2_label_atom_id' 27 5 'Structure model' '_struct_conn.ptnr2_label_comp_id' 28 5 'Structure model' '_struct_conn.ptnr2_label_seq_id' 29 5 'Structure model' '_struct_conn_type.id' 30 5 'Structure model' '_struct_site.pdbx_auth_asym_id' 31 5 'Structure model' '_struct_site.pdbx_auth_comp_id' 32 5 'Structure model' '_struct_site.pdbx_auth_seq_id' # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FUF _pdbx_database_status.recvd_initial_deposition_date 2000-09-15 _pdbx_database_status.deposit_site NDB _pdbx_database_status.process_site NDB _pdbx_database_status.status_code_sf REL _pdbx_database_status.SG_entry . _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Deng, J.' 1 'Xiong, Y.' 2 'Sudarsanakumar, C.' 3 'Shi, K.' 4 'Sundaralingam, M.' 5 # _citation.id primary _citation.title ;Crystal structures of two forms of a 14-mer RNA/DNA chimer duplex with double UU bulges: a novel intramolecular U*(A x U) base triple. ; _citation.journal_abbrev RNA _citation.journal_volume 7 _citation.page_first 1425 _citation.page_last 1431 _citation.year 2001 _citation.journal_id_ASTM RNARFU _citation.country UK _citation.journal_id_ISSN 1355-8382 _citation.journal_id_CSD 2122 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 11680847 _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Deng, J.' 1 ? primary 'Xiong, Y.' 2 ? primary 'Sudarsanakumar, C.' 3 ? primary 'Shi, K.' 4 ? primary 'Sundaralingam, M.' 5 ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn "(5'-R(*GP*GP*UP*AP*UP*UP*UP*CP*GP*GP*UP*AP*(CBR)P*C)-3')" 4503.547 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 non-polymer syn SPERMINE 202.340 1 ? ? ? ? 4 water nat water 18.015 68 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code 'GGUAUUUCGGUA(CBR)C' _entity_poly.pdbx_seq_one_letter_code_can GGUAUUUCGGUACC _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 SPERMINE SPM 4 water HOH # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 G n 1 2 G n 1 3 U n 1 4 A n 1 5 U n 1 6 U n 1 7 U n 1 8 C n 1 9 G n 1 10 G n 1 11 U n 1 12 A n 1 13 CBR n 1 14 C n # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight A 'RNA linking' y "ADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 C 'RNA linking' y "CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O8 P' 323.197 CBR 'DNA linking' n "5-BROMO-2'-DEOXY-CYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 Br N3 O7 P' 386.093 G 'RNA linking' y "GUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O8 P' 363.221 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 SPM non-polymer . SPERMINE ? 'C10 H26 N4' 202.340 U 'RNA linking' y "URIDINE-5'-MONOPHOSPHATE" ? 'C9 H13 N2 O9 P' 324.181 # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 G 1 1 1 G G A . n A 1 2 G 2 2 2 G G A . n A 1 3 U 3 3 3 U U A . n A 1 4 A 4 4 4 A A A . n A 1 5 U 5 5 5 U U A . n A 1 6 U 6 6 6 U U A . n A 1 7 U 7 7 7 U U A . n A 1 8 C 8 8 8 C C A . n A 1 9 G 9 9 9 G G A . n A 1 10 G 10 10 10 G G A . n A 1 11 U 11 11 11 U U A . n A 1 12 A 12 12 12 A A A . n A 1 13 CBR 13 13 13 CBR BRO A . n A 1 14 C 14 14 14 C C A . n B 1 1 G 1 15 15 G G B . n B 1 2 G 2 16 16 G G B . n B 1 3 U 3 17 17 U U B . n B 1 4 A 4 18 18 A A B . n B 1 5 U 5 19 19 U U B . n B 1 6 U 6 20 20 U U B . n B 1 7 U 7 21 21 U U B . n B 1 8 C 8 22 22 C C B . n B 1 9 G 9 23 23 G G B . n B 1 10 G 10 24 24 G G B . n B 1 11 U 11 25 25 U U B . n B 1 12 A 12 26 26 A A B . n B 1 13 CBR 13 27 27 CBR BRO B . n B 1 14 C 14 28 28 C C B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 97 97 MG MG A . D 3 SPM 1 98 98 SPM SPM B . E 4 HOH 1 30 30 HOH HOH A . E 4 HOH 2 31 31 HOH HOH A . E 4 HOH 3 34 34 HOH HOH A . E 4 HOH 4 35 35 HOH HOH A . E 4 HOH 5 36 36 HOH HOH A . E 4 HOH 6 38 38 HOH HOH A . E 4 HOH 7 39 39 HOH HOH A . E 4 HOH 8 40 40 HOH HOH A . E 4 HOH 9 43 43 HOH HOH A . E 4 HOH 10 44 44 HOH HOH A . E 4 HOH 11 48 48 HOH HOH A . E 4 HOH 12 50 50 HOH HOH A . E 4 HOH 13 53 53 HOH HOH A . E 4 HOH 14 54 54 HOH HOH A . E 4 HOH 15 56 56 HOH HOH A . E 4 HOH 16 57 57 HOH HOH A . E 4 HOH 17 58 58 HOH HOH A . E 4 HOH 18 62 62 HOH HOH A . E 4 HOH 19 63 63 HOH HOH A . E 4 HOH 20 64 64 HOH HOH A . E 4 HOH 21 65 65 HOH HOH A . E 4 HOH 22 66 66 HOH HOH A . E 4 HOH 23 67 67 HOH HOH A . E 4 HOH 24 69 69 HOH HOH A . E 4 HOH 25 70 70 HOH HOH A . E 4 HOH 26 71 71 HOH HOH A . E 4 HOH 27 72 72 HOH HOH A . E 4 HOH 28 73 73 HOH HOH A . E 4 HOH 29 74 74 HOH HOH A . E 4 HOH 30 78 78 HOH HOH A . E 4 HOH 31 79 79 HOH HOH A . E 4 HOH 32 80 80 HOH HOH A . E 4 HOH 33 84 84 HOH HOH A . E 4 HOH 34 86 86 HOH HOH A . E 4 HOH 35 88 88 HOH HOH A . E 4 HOH 36 92 92 HOH HOH A . E 4 HOH 37 93 93 HOH HOH A . E 4 HOH 38 96 96 HOH HOH A . F 4 HOH 1 29 29 HOH HOH B . F 4 HOH 2 32 32 HOH HOH B . F 4 HOH 3 33 33 HOH HOH B . F 4 HOH 4 37 37 HOH HOH B . F 4 HOH 5 41 41 HOH HOH B . F 4 HOH 6 42 42 HOH HOH B . F 4 HOH 7 45 45 HOH HOH B . F 4 HOH 8 46 46 HOH HOH B . F 4 HOH 9 47 47 HOH HOH B . F 4 HOH 10 49 49 HOH HOH B . F 4 HOH 11 51 51 HOH HOH B . F 4 HOH 12 52 52 HOH HOH B . F 4 HOH 13 55 55 HOH HOH B . F 4 HOH 14 59 59 HOH HOH B . F 4 HOH 15 60 60 HOH HOH B . F 4 HOH 16 61 61 HOH HOH B . F 4 HOH 17 68 68 HOH HOH B . F 4 HOH 18 75 75 HOH HOH B . F 4 HOH 19 76 76 HOH HOH B . F 4 HOH 20 77 77 HOH HOH B . F 4 HOH 21 81 81 HOH HOH B . F 4 HOH 22 82 82 HOH HOH B . F 4 HOH 23 83 83 HOH HOH B . F 4 HOH 24 85 85 HOH HOH B . F 4 HOH 25 87 87 HOH HOH B . F 4 HOH 26 89 89 HOH HOH B . F 4 HOH 27 90 90 HOH HOH B . F 4 HOH 28 91 91 HOH HOH B . F 4 HOH 29 94 94 HOH HOH B . F 4 HOH 30 95 95 HOH HOH B . # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal DENZO 'data reduction' . ? 1 SCALEPACK 'data scaling' . ? 2 MLPHARE phasing . ? 3 CNS refinement . ? 4 # _cell.entry_id 1FUF _cell.length_a 60.060 _cell.length_b 29.100 _cell.length_c 52.570 _cell.angle_alpha 90.00 _cell.angle_beta 120.69 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FUF _symmetry.space_group_name_H-M 'C 1 2 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 # _exptl.entry_id 1FUF _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 44.70 _exptl_crystal.density_Matthews 2.22 _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.temp 298.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details 'cacodylate, magnesium chloride, spermine tetrachloride, MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 25.0K' _exptl_crystal_grow.pdbx_pH_range ? # loop_ _exptl_crystal_grow_comp.crystal_id _exptl_crystal_grow_comp.id _exptl_crystal_grow_comp.sol_id _exptl_crystal_grow_comp.name _exptl_crystal_grow_comp.conc _exptl_crystal_grow_comp.volume _exptl_crystal_grow_comp.details 1 1 1 CACODYLATE ? ? ? 1 2 1 'MAGNESIUM CHLORIDE' ? ? ? 1 3 1 'SPERMINE TETRACHLORIDE' ? ? ? 1 4 1 MPD ? ? ? 1 5 2 MPD ? ? ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2000-04-13 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9196 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'NSLS BEAMLINE X4A' _diffrn_source.pdbx_wavelength 0.9196 _diffrn_source.pdbx_synchrotron_site NSLS _diffrn_source.pdbx_synchrotron_beamline X4A _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 1FUF _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F 2 _reflns.d_resolution_low 25 _reflns.d_resolution_high 1.7 _reflns.number_obs 8740 _reflns.number_all ? _reflns.percent_possible_obs 98.3 _reflns.pdbx_Rmerge_I_obs 0.05 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 21.7 _reflns.B_iso_Wilson_estimate 24.23 _reflns.pdbx_redundancy 2 _reflns.R_free_details ? _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 1.70 _reflns_shell.d_res_low 1.76 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 88.5 _reflns_shell.Rmerge_I_obs 0.213 _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy ? _reflns_shell.number_unique_all 1546 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 1FUF _refine.ls_number_reflns_obs 8549 _refine.ls_number_reflns_all 8737 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_d_res_low 10 _refine.ls_d_res_high 1.7 _refine.ls_percent_reflns_obs 97.8 _refine.ls_R_factor_obs ? _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.199 _refine.ls_R_factor_R_free 0.227 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 906 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 584 _refine_hist.pdbx_number_atoms_ligand 17 _refine_hist.number_atoms_solvent 68 _refine_hist.number_atoms_total 669 _refine_hist.d_res_high 1.7 _refine_hist.d_res_low 10 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function c_bond_d 0.00918 ? ? ? 'X-RAY DIFFRACTION' ? c_angle_deg 1.91 ? ? ? 'X-RAY DIFFRACTION' ? # _database_PDB_matrix.entry_id 1FUF _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _struct.entry_id 1FUF _struct.title 'CRYSTAL STRUCTURE OF A 14BP RNA OLIGONUCLEOTIDE CONTAINING DOUBLE UU BULGES: A NOVEL INTRAMOLECULAR U*(AU) BASE TRIPLE' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FUF _struct_keywords.pdbx_keywords RNA _struct_keywords.text 'bulge, base triple, RNA, crystal' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_ref.id 1 _struct_ref.entity_id 1 _struct_ref.db_name PDB _struct_ref.db_code 1FUF _struct_ref.pdbx_db_accession 1FUF _struct_ref.pdbx_db_isoform ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_align_begin ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 1FUF A 1 ? 14 ? 1FUF 1 ? 14 ? 1 14 2 1 1FUF B 1 ? 14 ? 1FUF 15 ? 28 ? 15 28 # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A A 12 "O3'" ? ? ? 1_555 A CBR 13 P ? ? A A 12 A CBR 13 1_555 ? ? ? ? ? ? ? 1.612 ? ? covale2 covale both ? A CBR 13 "O3'" ? ? ? 1_555 A C 14 P ? ? A CBR 13 A C 14 1_555 ? ? ? ? ? ? ? 1.605 ? ? covale3 covale both ? B A 12 "O3'" ? ? ? 1_555 B CBR 13 P ? ? B A 26 B CBR 27 1_555 ? ? ? ? ? ? ? 1.608 ? ? covale4 covale both ? B CBR 13 "O3'" ? ? ? 1_555 B C 14 P ? ? B CBR 27 B C 28 1_555 ? ? ? ? ? ? ? 1.597 ? ? metalc1 metalc ? ? E HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 92 A MG 97 1_555 ? ? ? ? ? ? ? 2.470 ? ? metalc2 metalc ? ? E HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 93 A MG 97 1_555 ? ? ? ? ? ? ? 1.901 ? ? metalc3 metalc ? ? E HOH . O ? ? ? 1_555 C MG . MG ? ? A HOH 96 A MG 97 1_555 ? ? ? ? ? ? ? 2.192 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 97 B HOH 94 1_555 ? ? ? ? ? ? ? 2.059 ? ? metalc5 metalc ? ? C MG . MG ? ? ? 1_555 F HOH . O ? ? A MG 97 B HOH 95 1_555 ? ? ? ? ? ? ? 1.944 ? ? hydrog1 hydrog ? ? A G 1 N1 ? ? ? 1_555 B C 14 N3 ? ? A G 1 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A G 1 N2 ? ? ? 1_555 B C 14 O2 ? ? A G 1 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A G 1 O6 ? ? ? 1_555 B C 14 N4 ? ? A G 1 B C 28 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A G 2 N1 ? ? ? 1_555 B CBR 13 N3 ? ? A G 2 B CBR 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A G 2 N2 ? ? ? 1_555 B CBR 13 O2 ? ? A G 2 B CBR 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A G 2 O6 ? ? ? 1_555 B CBR 13 N4 ? ? A G 2 B CBR 27 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A U 3 N3 ? ? ? 1_555 B A 12 N1 ? ? A U 3 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A U 3 O4 ? ? ? 1_555 B A 12 N6 ? ? A U 3 B A 26 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 6 O2 ? ? A A 4 B U 20 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog10 hydrog ? ? A A 4 N7 ? ? ? 1_555 B U 6 N3 ? ? A A 4 B U 20 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog11 hydrog ? ? A A 4 N1 ? ? ? 1_555 B U 11 N3 ? ? A A 4 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A A 4 N6 ? ? ? 1_555 B U 11 O4 ? ? A A 4 B U 25 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A U 5 N3 ? ? ? 1_555 B G 10 O6 ? ? A U 5 B G 24 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog14 hydrog ? ? A U 5 O2 ? ? ? 1_555 B G 10 N1 ? ? A U 5 B G 24 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog15 hydrog ? ? A U 6 N3 ? ? ? 1_555 B A 4 N7 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog16 hydrog ? ? A U 6 O2 ? ? ? 1_555 B A 4 N6 ? ? A U 6 B A 18 1_555 ? ? ? ? ? ? 'REVERSED HOOGSTEEN' ? ? ? hydrog17 hydrog ? ? A C 8 N3 ? ? ? 1_555 B G 9 N1 ? ? A C 8 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A C 8 N4 ? ? ? 1_555 B G 9 O6 ? ? A C 8 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A C 8 O2 ? ? ? 1_555 B G 9 N2 ? ? A C 8 B G 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A G 9 N1 ? ? ? 1_555 B C 8 N3 ? ? A G 9 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A G 9 N2 ? ? ? 1_555 B C 8 O2 ? ? A G 9 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A G 9 O6 ? ? ? 1_555 B C 8 N4 ? ? A G 9 B C 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A G 10 N1 ? ? ? 1_555 B U 5 O2 ? ? A G 10 B U 19 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog24 hydrog ? ? A G 10 O6 ? ? ? 1_555 B U 5 N3 ? ? A G 10 B U 19 1_555 ? ? ? ? ? ? TYPE_28_PAIR ? ? ? hydrog25 hydrog ? ? A U 11 N3 ? ? ? 1_555 B A 4 N1 ? ? A U 11 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A U 11 O4 ? ? ? 1_555 B A 4 N6 ? ? A U 11 B A 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A A 12 N1 ? ? ? 1_555 B U 3 N3 ? ? A A 12 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A A 12 N6 ? ? ? 1_555 B U 3 O4 ? ? A A 12 B U 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A CBR 13 N3 ? ? ? 1_555 B G 2 N1 ? ? A CBR 13 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A CBR 13 N4 ? ? ? 1_555 B G 2 O6 ? ? A CBR 13 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A CBR 13 O2 ? ? ? 1_555 B G 2 N2 ? ? A CBR 13 B G 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A C 14 N3 ? ? ? 1_555 B G 1 N1 ? ? A C 14 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog33 hydrog ? ? A C 14 N4 ? ? ? 1_555 B G 1 O6 ? ? A C 14 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog34 hydrog ? ? A C 14 O2 ? ? ? 1_555 B G 1 N2 ? ? A C 14 B G 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? E HOH . ? A HOH 92 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? E HOH . ? A HOH 93 ? 1_555 78.1 ? 2 O ? E HOH . ? A HOH 92 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? E HOH . ? A HOH 96 ? 1_555 95.3 ? 3 O ? E HOH . ? A HOH 93 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? E HOH . ? A HOH 96 ? 1_555 99.6 ? 4 O ? E HOH . ? A HOH 92 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? F HOH . ? B HOH 94 ? 1_555 171.5 ? 5 O ? E HOH . ? A HOH 93 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? F HOH . ? B HOH 94 ? 1_555 109.7 ? 6 O ? E HOH . ? A HOH 96 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? F HOH . ? B HOH 94 ? 1_555 80.3 ? 7 O ? E HOH . ? A HOH 92 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? F HOH . ? B HOH 95 ? 1_555 89.3 ? 8 O ? E HOH . ? A HOH 93 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? F HOH . ? B HOH 95 ? 1_555 164.7 ? 9 O ? E HOH . ? A HOH 96 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? F HOH . ? B HOH 95 ? 1_555 90.2 ? 10 O ? F HOH . ? B HOH 94 ? 1_555 MG ? C MG . ? A MG 97 ? 1_555 O ? F HOH . ? B HOH 95 ? 1_555 83.4 ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A MG 97 ? 5 'BINDING SITE FOR RESIDUE MG A 97' AC2 Software B SPM 98 ? 16 'BINDING SITE FOR RESIDUE SPM B 98' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HOH E . ? HOH A 92 . ? 1_555 ? 2 AC1 5 HOH E . ? HOH A 93 . ? 1_555 ? 3 AC1 5 HOH E . ? HOH A 96 . ? 1_555 ? 4 AC1 5 HOH F . ? HOH B 94 . ? 1_555 ? 5 AC1 5 HOH F . ? HOH B 95 . ? 1_555 ? 6 AC2 16 A A 4 ? A A 4 . ? 1_555 ? 7 AC2 16 U A 5 ? U A 5 . ? 1_555 ? 8 AC2 16 U A 6 ? U A 6 . ? 1_555 ? 9 AC2 16 C A 8 ? C A 8 . ? 1_555 ? 10 AC2 16 G A 9 ? G A 9 . ? 1_555 ? 11 AC2 16 G A 10 ? G A 10 . ? 1_555 ? 12 AC2 16 U A 11 ? U A 11 . ? 1_555 ? 13 AC2 16 A B 4 ? A B 18 . ? 1_555 ? 14 AC2 16 U B 5 ? U B 19 . ? 1_555 ? 15 AC2 16 U B 6 ? U B 20 . ? 1_555 ? 16 AC2 16 C B 8 ? C B 22 . ? 1_555 ? 17 AC2 16 G B 9 ? G B 23 . ? 1_555 ? 18 AC2 16 G B 10 ? G B 24 . ? 1_555 ? 19 AC2 16 U B 11 ? U B 25 . ? 1_555 ? 20 AC2 16 HOH F . ? HOH B 33 . ? 1_555 ? 21 AC2 16 HOH F . ? HOH B 59 . ? 1_555 ? # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "C2'" A U 7 ? ? "C3'" A U 7 ? ? "O3'" A U 7 ? ? 127.88 113.70 14.18 1.60 N 2 1 "C4'" A U 7 ? ? "C3'" A U 7 ? ? "C2'" A U 7 ? ? 94.39 102.60 -8.21 1.00 N 3 1 "C3'" A U 7 ? ? "C2'" A U 7 ? ? "C1'" A U 7 ? ? 106.51 101.50 5.01 0.80 N 4 1 "O4'" A U 7 ? ? "C1'" A U 7 ? ? "C2'" A U 7 ? ? 96.38 105.80 -9.42 1.00 N 5 1 N1 A U 7 ? ? "C1'" A U 7 ? ? "C2'" A U 7 ? ? 105.12 112.00 -6.88 1.10 N 6 1 "C1'" A U 7 ? ? "C2'" A U 7 ? ? "O2'" A U 7 ? ? 128.68 110.60 18.08 3.00 N 7 1 "C3'" A U 7 ? ? "C2'" A U 7 ? ? "O2'" A U 7 ? ? 95.65 113.30 -17.65 2.90 N # loop_ _pdbx_validate_planes.id _pdbx_validate_planes.PDB_model_num _pdbx_validate_planes.auth_comp_id _pdbx_validate_planes.auth_asym_id _pdbx_validate_planes.auth_seq_id _pdbx_validate_planes.PDB_ins_code _pdbx_validate_planes.label_alt_id _pdbx_validate_planes.rmsd _pdbx_validate_planes.type 1 1 U A 7 ? ? 0.068 'SIDE CHAIN' 2 1 U B 20 ? ? 0.074 'SIDE CHAIN' # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A CBR 13 A CBR 13 ? DC ? 2 B CBR 13 B CBR 27 ? DC ? # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal A OP3 O N N 1 A P P N N 2 A OP1 O N N 3 A OP2 O N N 4 A "O5'" O N N 5 A "C5'" C N N 6 A "C4'" C N R 7 A "O4'" O N N 8 A "C3'" C N S 9 A "O3'" O N N 10 A "C2'" C N R 11 A "O2'" O N N 12 A "C1'" C N R 13 A N9 N Y N 14 A C8 C Y N 15 A N7 N Y N 16 A C5 C Y N 17 A C6 C Y N 18 A N6 N N N 19 A N1 N Y N 20 A C2 C Y N 21 A N3 N Y N 22 A C4 C Y N 23 A HOP3 H N N 24 A HOP2 H N N 25 A "H5'" H N N 26 A "H5''" H N N 27 A "H4'" H N N 28 A "H3'" H N N 29 A "HO3'" H N N 30 A "H2'" H N N 31 A "HO2'" H N N 32 A "H1'" H N N 33 A H8 H N N 34 A H61 H N N 35 A H62 H N N 36 A H2 H N N 37 C OP3 O N N 38 C P P N N 39 C OP1 O N N 40 C OP2 O N N 41 C "O5'" O N N 42 C "C5'" C N N 43 C "C4'" C N R 44 C "O4'" O N N 45 C "C3'" C N S 46 C "O3'" O N N 47 C "C2'" C N R 48 C "O2'" O N N 49 C "C1'" C N R 50 C N1 N N N 51 C C2 C N N 52 C O2 O N N 53 C N3 N N N 54 C C4 C N N 55 C N4 N N N 56 C C5 C N N 57 C C6 C N N 58 C HOP3 H N N 59 C HOP2 H N N 60 C "H5'" H N N 61 C "H5''" H N N 62 C "H4'" H N N 63 C "H3'" H N N 64 C "HO3'" H N N 65 C "H2'" H N N 66 C "HO2'" H N N 67 C "H1'" H N N 68 C H41 H N N 69 C H42 H N N 70 C H5 H N N 71 C H6 H N N 72 CBR BR BR N N 73 CBR P P N N 74 CBR OP1 O N N 75 CBR OP2 O N N 76 CBR "O5'" O N N 77 CBR N1 N N N 78 CBR C6 C N N 79 CBR C2 C N N 80 CBR O2 O N N 81 CBR N3 N N N 82 CBR C4 C N N 83 CBR N4 N N N 84 CBR C5 C N N 85 CBR "C2'" C N N 86 CBR "C5'" C N N 87 CBR "C4'" C N R 88 CBR "O4'" O N N 89 CBR "C1'" C N R 90 CBR "C3'" C N S 91 CBR "O3'" O N N 92 CBR OP3 O N N 93 CBR HOP2 H N N 94 CBR H6 H N N 95 CBR H41 H N N 96 CBR H42 H N N 97 CBR "H2'" H N N 98 CBR "H2''" H N N 99 CBR "H5'" H N N 100 CBR "H5''" H N N 101 CBR "H4'" H N N 102 CBR "H1'" H N N 103 CBR "H3'" H N N 104 CBR "HO3'" H N N 105 CBR HOP3 H N N 106 G OP3 O N N 107 G P P N N 108 G OP1 O N N 109 G OP2 O N N 110 G "O5'" O N N 111 G "C5'" C N N 112 G "C4'" C N R 113 G "O4'" O N N 114 G "C3'" C N S 115 G "O3'" O N N 116 G "C2'" C N R 117 G "O2'" O N N 118 G "C1'" C N R 119 G N9 N Y N 120 G C8 C Y N 121 G N7 N Y N 122 G C5 C Y N 123 G C6 C N N 124 G O6 O N N 125 G N1 N N N 126 G C2 C N N 127 G N2 N N N 128 G N3 N N N 129 G C4 C Y N 130 G HOP3 H N N 131 G HOP2 H N N 132 G "H5'" H N N 133 G "H5''" H N N 134 G "H4'" H N N 135 G "H3'" H N N 136 G "HO3'" H N N 137 G "H2'" H N N 138 G "HO2'" H N N 139 G "H1'" H N N 140 G H8 H N N 141 G H1 H N N 142 G H21 H N N 143 G H22 H N N 144 HOH O O N N 145 HOH H1 H N N 146 HOH H2 H N N 147 MG MG MG N N 148 SPM N1 N N N 149 SPM C2 C N N 150 SPM C3 C N N 151 SPM C4 C N N 152 SPM N5 N N N 153 SPM C6 C N N 154 SPM C7 C N N 155 SPM C8 C N N 156 SPM C9 C N N 157 SPM N10 N N N 158 SPM C11 C N N 159 SPM C12 C N N 160 SPM C13 C N N 161 SPM N14 N N N 162 SPM HN11 H N N 163 SPM HN12 H N N 164 SPM H21 H N N 165 SPM H22 H N N 166 SPM H31 H N N 167 SPM H32 H N N 168 SPM H41 H N N 169 SPM H42 H N N 170 SPM HN5 H N N 171 SPM H61 H N N 172 SPM H62 H N N 173 SPM H71 H N N 174 SPM H72 H N N 175 SPM H81 H N N 176 SPM H82 H N N 177 SPM H91 H N N 178 SPM H92 H N N 179 SPM HN0 H N N 180 SPM H111 H N N 181 SPM H112 H N N 182 SPM H121 H N N 183 SPM H122 H N N 184 SPM H131 H N N 185 SPM H132 H N N 186 SPM HN41 H N N 187 SPM HN42 H N N 188 U OP3 O N N 189 U P P N N 190 U OP1 O N N 191 U OP2 O N N 192 U "O5'" O N N 193 U "C5'" C N N 194 U "C4'" C N R 195 U "O4'" O N N 196 U "C3'" C N S 197 U "O3'" O N N 198 U "C2'" C N R 199 U "O2'" O N N 200 U "C1'" C N R 201 U N1 N N N 202 U C2 C N N 203 U O2 O N N 204 U N3 N N N 205 U C4 C N N 206 U O4 O N N 207 U C5 C N N 208 U C6 C N N 209 U HOP3 H N N 210 U HOP2 H N N 211 U "H5'" H N N 212 U "H5''" H N N 213 U "H4'" H N N 214 U "H3'" H N N 215 U "HO3'" H N N 216 U "H2'" H N N 217 U "HO2'" H N N 218 U "H1'" H N N 219 U H3 H N N 220 U H5 H N N 221 U H6 H N N 222 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal A OP3 P sing N N 1 A OP3 HOP3 sing N N 2 A P OP1 doub N N 3 A P OP2 sing N N 4 A P "O5'" sing N N 5 A OP2 HOP2 sing N N 6 A "O5'" "C5'" sing N N 7 A "C5'" "C4'" sing N N 8 A "C5'" "H5'" sing N N 9 A "C5'" "H5''" sing N N 10 A "C4'" "O4'" sing N N 11 A "C4'" "C3'" sing N N 12 A "C4'" "H4'" sing N N 13 A "O4'" "C1'" sing N N 14 A "C3'" "O3'" sing N N 15 A "C3'" "C2'" sing N N 16 A "C3'" "H3'" sing N N 17 A "O3'" "HO3'" sing N N 18 A "C2'" "O2'" sing N N 19 A "C2'" "C1'" sing N N 20 A "C2'" "H2'" sing N N 21 A "O2'" "HO2'" sing N N 22 A "C1'" N9 sing N N 23 A "C1'" "H1'" sing N N 24 A N9 C8 sing Y N 25 A N9 C4 sing Y N 26 A C8 N7 doub Y N 27 A C8 H8 sing N N 28 A N7 C5 sing Y N 29 A C5 C6 sing Y N 30 A C5 C4 doub Y N 31 A C6 N6 sing N N 32 A C6 N1 doub Y N 33 A N6 H61 sing N N 34 A N6 H62 sing N N 35 A N1 C2 sing Y N 36 A C2 N3 doub Y N 37 A C2 H2 sing N N 38 A N3 C4 sing Y N 39 C OP3 P sing N N 40 C OP3 HOP3 sing N N 41 C P OP1 doub N N 42 C P OP2 sing N N 43 C P "O5'" sing N N 44 C OP2 HOP2 sing N N 45 C "O5'" "C5'" sing N N 46 C "C5'" "C4'" sing N N 47 C "C5'" "H5'" sing N N 48 C "C5'" "H5''" sing N N 49 C "C4'" "O4'" sing N N 50 C "C4'" "C3'" sing N N 51 C "C4'" "H4'" sing N N 52 C "O4'" "C1'" sing N N 53 C "C3'" "O3'" sing N N 54 C "C3'" "C2'" sing N N 55 C "C3'" "H3'" sing N N 56 C "O3'" "HO3'" sing N N 57 C "C2'" "O2'" sing N N 58 C "C2'" "C1'" sing N N 59 C "C2'" "H2'" sing N N 60 C "O2'" "HO2'" sing N N 61 C "C1'" N1 sing N N 62 C "C1'" "H1'" sing N N 63 C N1 C2 sing N N 64 C N1 C6 sing N N 65 C C2 O2 doub N N 66 C C2 N3 sing N N 67 C N3 C4 doub N N 68 C C4 N4 sing N N 69 C C4 C5 sing N N 70 C N4 H41 sing N N 71 C N4 H42 sing N N 72 C C5 C6 doub N N 73 C C5 H5 sing N N 74 C C6 H6 sing N N 75 CBR BR C5 sing N N 76 CBR P OP1 doub N N 77 CBR P OP2 sing N N 78 CBR P "O5'" sing N N 79 CBR P OP3 sing N N 80 CBR OP2 HOP2 sing N N 81 CBR "O5'" "C5'" sing N N 82 CBR N1 C6 sing N N 83 CBR N1 C2 sing N N 84 CBR N1 "C1'" sing N N 85 CBR C6 C5 doub N N 86 CBR C6 H6 sing N N 87 CBR C2 O2 doub N N 88 CBR C2 N3 sing N N 89 CBR N3 C4 doub N N 90 CBR C4 N4 sing N N 91 CBR C4 C5 sing N N 92 CBR N4 H41 sing N N 93 CBR N4 H42 sing N N 94 CBR "C2'" "C1'" sing N N 95 CBR "C2'" "C3'" sing N N 96 CBR "C2'" "H2'" sing N N 97 CBR "C2'" "H2''" sing N N 98 CBR "C5'" "C4'" sing N N 99 CBR "C5'" "H5'" sing N N 100 CBR "C5'" "H5''" sing N N 101 CBR "C4'" "O4'" sing N N 102 CBR "C4'" "C3'" sing N N 103 CBR "C4'" "H4'" sing N N 104 CBR "O4'" "C1'" sing N N 105 CBR "C1'" "H1'" sing N N 106 CBR "C3'" "O3'" sing N N 107 CBR "C3'" "H3'" sing N N 108 CBR "O3'" "HO3'" sing N N 109 CBR OP3 HOP3 sing N N 110 G OP3 P sing N N 111 G OP3 HOP3 sing N N 112 G P OP1 doub N N 113 G P OP2 sing N N 114 G P "O5'" sing N N 115 G OP2 HOP2 sing N N 116 G "O5'" "C5'" sing N N 117 G "C5'" "C4'" sing N N 118 G "C5'" "H5'" sing N N 119 G "C5'" "H5''" sing N N 120 G "C4'" "O4'" sing N N 121 G "C4'" "C3'" sing N N 122 G "C4'" "H4'" sing N N 123 G "O4'" "C1'" sing N N 124 G "C3'" "O3'" sing N N 125 G "C3'" "C2'" sing N N 126 G "C3'" "H3'" sing N N 127 G "O3'" "HO3'" sing N N 128 G "C2'" "O2'" sing N N 129 G "C2'" "C1'" sing N N 130 G "C2'" "H2'" sing N N 131 G "O2'" "HO2'" sing N N 132 G "C1'" N9 sing N N 133 G "C1'" "H1'" sing N N 134 G N9 C8 sing Y N 135 G N9 C4 sing Y N 136 G C8 N7 doub Y N 137 G C8 H8 sing N N 138 G N7 C5 sing Y N 139 G C5 C6 sing N N 140 G C5 C4 doub Y N 141 G C6 O6 doub N N 142 G C6 N1 sing N N 143 G N1 C2 sing N N 144 G N1 H1 sing N N 145 G C2 N2 sing N N 146 G C2 N3 doub N N 147 G N2 H21 sing N N 148 G N2 H22 sing N N 149 G N3 C4 sing N N 150 HOH O H1 sing N N 151 HOH O H2 sing N N 152 SPM N1 C2 sing N N 153 SPM N1 HN11 sing N N 154 SPM N1 HN12 sing N N 155 SPM C2 C3 sing N N 156 SPM C2 H21 sing N N 157 SPM C2 H22 sing N N 158 SPM C3 C4 sing N N 159 SPM C3 H31 sing N N 160 SPM C3 H32 sing N N 161 SPM C4 N5 sing N N 162 SPM C4 H41 sing N N 163 SPM C4 H42 sing N N 164 SPM N5 C6 sing N N 165 SPM N5 HN5 sing N N 166 SPM C6 C7 sing N N 167 SPM C6 H61 sing N N 168 SPM C6 H62 sing N N 169 SPM C7 C8 sing N N 170 SPM C7 H71 sing N N 171 SPM C7 H72 sing N N 172 SPM C8 C9 sing N N 173 SPM C8 H81 sing N N 174 SPM C8 H82 sing N N 175 SPM C9 N10 sing N N 176 SPM C9 H91 sing N N 177 SPM C9 H92 sing N N 178 SPM N10 C11 sing N N 179 SPM N10 HN0 sing N N 180 SPM C11 C12 sing N N 181 SPM C11 H111 sing N N 182 SPM C11 H112 sing N N 183 SPM C12 C13 sing N N 184 SPM C12 H121 sing N N 185 SPM C12 H122 sing N N 186 SPM C13 N14 sing N N 187 SPM C13 H131 sing N N 188 SPM C13 H132 sing N N 189 SPM N14 HN41 sing N N 190 SPM N14 HN42 sing N N 191 U OP3 P sing N N 192 U OP3 HOP3 sing N N 193 U P OP1 doub N N 194 U P OP2 sing N N 195 U P "O5'" sing N N 196 U OP2 HOP2 sing N N 197 U "O5'" "C5'" sing N N 198 U "C5'" "C4'" sing N N 199 U "C5'" "H5'" sing N N 200 U "C5'" "H5''" sing N N 201 U "C4'" "O4'" sing N N 202 U "C4'" "C3'" sing N N 203 U "C4'" "H4'" sing N N 204 U "O4'" "C1'" sing N N 205 U "C3'" "O3'" sing N N 206 U "C3'" "C2'" sing N N 207 U "C3'" "H3'" sing N N 208 U "O3'" "HO3'" sing N N 209 U "C2'" "O2'" sing N N 210 U "C2'" "C1'" sing N N 211 U "C2'" "H2'" sing N N 212 U "O2'" "HO2'" sing N N 213 U "C1'" N1 sing N N 214 U "C1'" "H1'" sing N N 215 U N1 C2 sing N N 216 U N1 C6 sing N N 217 U C2 O2 doub N N 218 U C2 N3 sing N N 219 U N3 C4 sing N N 220 U N3 H3 sing N N 221 U C4 O4 doub N N 222 U C4 C5 sing N N 223 U C5 C6 doub N N 224 U C5 H5 sing N N 225 U C6 H6 sing N N 226 # loop_ _ndb_struct_conf_na.entry_id _ndb_struct_conf_na.feature 1FUF 'double helix' 1FUF 'a-form double helix' 1FUF 'bulge loop' 1FUF 'mismatched base pair' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A G 1 1_555 B C 14 1_555 -0.457 -0.077 0.068 -4.843 -5.241 0.861 1 A_G1:C28_B A 1 ? B 28 ? 19 1 1 A G 2 1_555 B CBR 13 1_555 -0.203 -0.280 -0.020 -2.698 -13.570 0.511 2 A_G2:CBR27_B A 2 ? B 27 ? 19 1 1 A U 3 1_555 B A 12 1_555 -0.098 -0.049 -0.031 1.414 -10.193 3.410 3 A_U3:A26_B A 3 ? B 26 ? 20 1 1 A A 4 1_555 B U 11 1_555 -0.026 -0.154 0.187 -0.566 -15.383 1.480 4 A_A4:U25_B A 4 ? B 25 ? 20 1 1 A U 5 1_555 B G 10 1_555 2.369 -0.595 0.183 6.636 -6.927 -3.993 5 A_U5:G24_B A 5 ? B 24 ? 28 ? 1 A C 8 1_555 B G 9 1_555 0.189 -0.091 -0.133 -1.063 0.217 2.477 6 A_C8:G23_B A 8 ? B 23 ? 19 1 1 A G 9 1_555 B C 8 1_555 -0.229 -0.133 -0.170 0.376 -0.466 2.889 7 A_G9:C22_B A 9 ? B 22 ? 19 1 1 A G 10 1_555 B U 5 1_555 -2.349 -0.595 0.300 -5.496 -5.457 -1.746 8 A_G10:U19_B A 10 ? B 19 ? 28 ? 1 A U 11 1_555 B A 4 1_555 0.100 -0.078 0.118 3.060 -14.330 2.352 9 A_U11:A18_B A 11 ? B 18 ? 20 1 1 A A 12 1_555 B U 3 1_555 0.055 -0.104 0.171 4.748 -10.378 3.790 10 A_A12:U17_B A 12 ? B 17 ? 20 1 1 A CBR 13 1_555 B G 2 1_555 0.207 -0.125 -0.114 8.734 -13.846 -0.887 11 A_CBR13:G16_B A 13 ? B 16 ? 19 1 1 A C 14 1_555 B G 1 1_555 0.442 -0.091 -0.100 3.190 -5.984 1.174 12 A_C14:G15_B A 14 ? B 15 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A G 1 1_555 B C 14 1_555 A G 2 1_555 B CBR 13 1_555 -0.627 -1.572 3.220 -1.189 6.281 33.519 -3.622 0.891 2.906 10.770 2.038 34.106 1 AA_G1G2:CBR27C28_BB A 1 ? B 28 ? A 2 ? B 27 ? 1 A G 2 1_555 B CBR 13 1_555 A U 3 1_555 B A 12 1_555 0.794 -1.733 3.178 1.836 3.185 30.921 -3.808 -1.145 3.030 5.948 -3.428 31.133 2 AA_G2U3:A26CBR27_BB A 2 ? B 27 ? A 3 ? B 26 ? 1 A U 3 1_555 B A 12 1_555 A A 4 1_555 B U 11 1_555 -0.491 -1.627 3.231 -1.857 9.284 29.402 -4.717 0.591 2.632 17.722 3.545 30.857 3 AA_U3A4:U25A26_BB A 3 ? B 26 ? A 4 ? B 25 ? 1 A A 4 1_555 B U 11 1_555 A U 5 1_555 B G 10 1_555 -0.172 -1.091 3.105 0.720 7.410 39.126 -2.392 0.329 2.856 10.945 -1.064 39.801 4 AA_A4U5:G24U25_BB A 4 ? B 25 ? A 5 ? B 24 ? 1 A U 5 1_555 B G 10 1_555 A C 8 1_555 B G 9 1_555 -1.950 -1.932 3.062 -0.771 11.569 40.958 -3.680 2.623 2.486 16.146 1.076 42.500 5 AA_U5C8:G23G24_BB A 5 ? B 24 ? A 8 ? B 23 ? 1 A C 8 1_555 B G 9 1_555 A G 9 1_555 B C 8 1_555 -0.164 -2.676 3.339 0.137 2.268 21.088 -8.189 0.502 3.036 6.174 -0.372 21.209 6 AA_C8G9:C22G23_BB A 8 ? B 23 ? A 9 ? B 22 ? 1 A G 9 1_555 B C 8 1_555 A G 10 1_555 B U 5 1_555 2.138 -2.016 2.998 1.061 9.861 40.628 -3.714 -2.904 2.516 13.952 -1.501 41.771 7 AA_G9G10:U19C22_BB A 9 ? B 22 ? A 10 ? B 19 ? 1 A G 10 1_555 B U 5 1_555 A U 11 1_555 B A 4 1_555 -0.083 -0.866 3.010 -0.245 9.887 38.693 -2.285 0.097 2.718 14.634 0.362 39.890 8 AA_G10U11:A18U19_BB A 10 ? B 19 ? A 11 ? B 18 ? 1 A U 11 1_555 B A 4 1_555 A A 12 1_555 B U 3 1_555 0.238 -1.592 3.076 -1.343 9.867 31.439 -4.267 -0.618 2.465 17.663 2.404 32.940 9 AA_U11A12:U17A18_BB A 11 ? B 18 ? A 12 ? B 17 ? 1 A A 12 1_555 B U 3 1_555 A CBR 13 1_555 B G 2 1_555 -0.919 -1.965 3.137 -0.787 3.787 30.398 -4.411 1.596 2.899 7.186 1.493 30.637 10 AA_A12CBR13:G16U17_BB A 12 ? B 17 ? A 13 ? B 16 ? 1 A CBR 13 1_555 B G 2 1_555 A C 14 1_555 B G 1 1_555 0.614 -1.988 3.409 0.942 5.144 33.258 -4.272 -0.907 3.091 8.919 -1.634 33.655 11 AA_CBR13C14:G15G16_BB A 13 ? B 16 ? A 14 ? B 15 ? # _atom_sites.entry_id 1FUF _atom_sites.fract_transf_matrix[1][1] 0.016650 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.009882 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.034364 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022120 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol BR C MG N O P # loop_