HEADER CELL ADHESION 15-SEP-00 1FUV TITLE SOLUTION STRUCTURE OF AN RGD PEPTIDE ISOMER-A COMPND MOL_ID: 1; COMPND 2 MOLECULE: RGD PEPTIDE ISOMER-A; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: PEPTIDE WAS CHEMICALLY SYNTHESIZED KEYWDS DOUBLE S-S BONDS, TYPE I BETA-TURN, CELL ADHESION EXPDTA SOLUTION NMR NUMMDL 19 AUTHOR N.ASSA-MUNT,X.JIA,P.LAAKKONEN,E.RUOSLAHTI REVDAT 3 23-FEB-22 1FUV 1 REMARK REVDAT 2 24-FEB-09 1FUV 1 VERSN REVDAT 1 16-MAY-01 1FUV 0 JRNL AUTH N.ASSA-MUNT,X.JIA,P.LAAKKONEN,E.RUOSLAHTI JRNL TITL SOLUTION STRUCTURES AND INTEGRIN BINDING ACTIVITIES OF AN JRNL TITL 2 RGD PEPTIDE WITH TWO ISOMERS. JRNL REF BIOCHEMISTRY V. 40 2373 2001 JRNL REFN ISSN 0006-2960 JRNL PMID 11327857 JRNL DOI 10.1021/BI002101F REMARK 1 REMARK 1 REFERENCE 1 REMARK 1 AUTH E.RUOSLAHTI REMARK 1 TITL RGD AND OTHER RECOGNITION SEQUENCES FOR INTEGRINS. REMARK 1 REF ANNU.REV.CELL DEV.BIOL. V. 12 697 1996 REMARK 1 REFN ISSN 1081-0706 REMARK 1 DOI 10.1146/ANNUREV.CELLBIO.12.1.697 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.851 REMARK 3 AUTHORS : ALEX.T. BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 1FUV COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-SEP-00. REMARK 100 THE DEPOSITION ID IS D_1000011917. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 293 REMARK 210 PH : NULL REMARK 210 IONIC STRENGTH : NULL REMARK 210 PRESSURE : 1 ATM REMARK 210 SAMPLE CONTENTS : 2.5 MG REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY; DQF-COSY REMARK 210 SPECTROMETER FIELD STRENGTH : 500 MHZ REMARK 210 SPECTROMETER MODEL : UNITYPLUS REMARK 210 SPECTROMETER MANUFACTURER : VARIAN REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : NULL REMARK 210 METHOD USED : DISTANCE GEOMETRY SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 100 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 19 REMARK 210 CONFORMERS, SELECTION CRITERIA : BACK CALCULATED DATA AGREE WITH REMARK 210 EXPERIMENTAL NOESY SPECTRUM, REMARK 210 STRUCTURES WITH ACCEPTABLE REMARK 210 COVALENT GEOMETRY,STRUCTURES REMARK 210 WITH FAVORABLE NON-BOND ENERGY, REMARK 210 STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS,STRUCTURES REMARK 210 WITH THE LOWEST ENERGY REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : 8 REMARK 210 REMARK 210 REMARK: NULL REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 ASP A 3 -57.32 -137.45 REMARK 500 1 CYS A 4 -116.02 -54.79 REMARK 500 1 ARG A 5 -47.25 -155.19 REMARK 500 1 CYS A 8 56.07 -90.83 REMARK 500 2 ASP A 3 -64.70 -136.70 REMARK 500 2 CYS A 4 -112.75 -55.52 REMARK 500 2 ARG A 5 -74.90 -152.99 REMARK 500 2 CYS A 8 32.17 -99.71 REMARK 500 2 PHE A 9 170.48 -49.00 REMARK 500 3 ASP A 3 -62.35 -128.08 REMARK 500 3 CYS A 4 -109.56 -54.64 REMARK 500 3 ARG A 5 -78.08 -153.51 REMARK 500 3 PHE A 9 172.65 -46.61 REMARK 500 4 CYS A 4 -106.47 -49.16 REMARK 500 4 ARG A 5 -87.70 -154.85 REMARK 500 4 ASP A 7 -50.72 -134.23 REMARK 500 4 PHE A 9 178.43 -54.99 REMARK 500 5 ASP A 3 -64.63 -133.17 REMARK 500 5 CYS A 4 -108.81 -52.76 REMARK 500 5 ARG A 5 -77.24 -152.75 REMARK 500 5 CYS A 8 49.50 -90.47 REMARK 500 6 ASP A 3 -62.61 -136.01 REMARK 500 6 CYS A 4 -115.14 -52.65 REMARK 500 6 ARG A 5 -45.36 -154.72 REMARK 500 6 CYS A 8 40.04 -96.24 REMARK 500 7 ASP A 3 -66.19 -134.51 REMARK 500 7 CYS A 4 -110.11 -50.61 REMARK 500 7 ARG A 5 -83.17 -153.55 REMARK 500 7 CYS A 8 41.75 -85.76 REMARK 500 8 ASP A 3 -62.90 -133.83 REMARK 500 8 CYS A 4 -112.84 -54.41 REMARK 500 8 ARG A 5 -89.60 -154.19 REMARK 500 8 ASP A 7 -49.79 -139.55 REMARK 500 8 CYS A 8 33.51 -90.31 REMARK 500 9 ASP A 3 -70.49 -136.16 REMARK 500 9 CYS A 4 -111.15 -49.93 REMARK 500 9 ARG A 5 -85.28 -153.37 REMARK 500 9 ASP A 7 -56.24 -121.50 REMARK 500 9 CYS A 8 37.32 -82.84 REMARK 500 10 ASP A 3 -63.41 -131.30 REMARK 500 10 CYS A 4 -110.73 -53.63 REMARK 500 10 ARG A 5 -85.26 -153.78 REMARK 500 10 ASP A 7 -52.29 -127.82 REMARK 500 10 CYS A 8 34.35 -88.86 REMARK 500 11 ASP A 3 -64.15 -126.36 REMARK 500 11 CYS A 4 -110.13 -51.51 REMARK 500 11 ARG A 5 -82.56 -153.72 REMARK 500 11 CYS A 8 32.15 -90.21 REMARK 500 12 ASP A 3 -65.60 -134.96 REMARK 500 12 CYS A 4 -111.15 -51.34 REMARK 500 REMARK 500 THIS ENTRY HAS 81 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 5 0.31 SIDE CHAIN REMARK 500 2 ARG A 5 0.28 SIDE CHAIN REMARK 500 3 ARG A 5 0.32 SIDE CHAIN REMARK 500 4 ARG A 5 0.23 SIDE CHAIN REMARK 500 5 ARG A 5 0.31 SIDE CHAIN REMARK 500 6 ARG A 5 0.25 SIDE CHAIN REMARK 500 7 ARG A 5 0.32 SIDE CHAIN REMARK 500 8 ARG A 5 0.26 SIDE CHAIN REMARK 500 9 ARG A 5 0.30 SIDE CHAIN REMARK 500 10 ARG A 5 0.29 SIDE CHAIN REMARK 500 11 ARG A 5 0.28 SIDE CHAIN REMARK 500 12 ARG A 5 0.30 SIDE CHAIN REMARK 500 13 ARG A 5 0.27 SIDE CHAIN REMARK 500 14 ARG A 5 0.27 SIDE CHAIN REMARK 500 15 ARG A 5 0.28 SIDE CHAIN REMARK 500 16 ARG A 5 0.32 SIDE CHAIN REMARK 500 17 ARG A 5 0.30 SIDE CHAIN REMARK 500 18 ARG A 5 0.31 SIDE CHAIN REMARK 500 19 ARG A 5 0.25 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1FUL RELATED DB: PDB REMARK 900 1FUL IS THE SOLUTION STRUCTURE OF AN RGD PEPTIDE ISOMER-B DBREF 1FUV A 1 11 PDB 1FUV 1FUV 1 11 SEQRES 1 A 11 ALA CYS ASP CYS ARG GLY ASP CYS PHE CYS GLY SSBOND 1 CYS A 2 CYS A 10 1555 1555 2.03 SSBOND 2 CYS A 4 CYS A 8 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1