data_1FV9 # _entry.id 1FV9 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.289 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 1FV9 RCSB RCSB011931 WWPDB D_1000011931 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 1FV9 _pdbx_database_status.recvd_initial_deposition_date 2000-09-19 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? # _audit_author.name 'Nienaber, V.' _audit_author.pdbx_ordinal 1 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Identification of novel inhibitors of urokinase via NMR-based screening.' J.Med.Chem. 43 3862 3866 2000 JMCMAR US 0022-2623 0151 ? 11052791 10.1021/jm0002228 1 ;Re-engineering of human urokinase provides a system for structure-based drug design at high resolution and reveals a novel structural subsite ; J.Biol.Chem. 275 7239 7248 2000 JBCHA3 US 0021-9258 0071 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hajduk, P.J.' 1 primary 'Boyd, S.' 2 primary 'Nettesheim, D.' 3 primary 'Nienaber, V.' 4 primary 'Severin, J.' 5 primary 'Smith, R.' 6 primary 'Davidson, D.' 7 primary 'Rockway, T.' 8 primary 'Fesik, S.W.' 9 # _cell.entry_id 1FV9 _cell.length_a 55.160 _cell.length_b 53.000 _cell.length_c 82.300 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 1FV9 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man UROKINASE 27590.430 1 3.4.21.73 'C122A, N145Q' 'B CHAIN (16-243)' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? 3 non-polymer syn 2-AMINO-5-HYDROXY-BENZIMIDAZOLE 149.150 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT ; _entity_poly.pdbx_seq_one_letter_code_can ;IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTIALPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ILE n 1 2 ILE n 1 3 GLY n 1 4 GLY n 1 5 GLU n 1 6 PHE n 1 7 THR n 1 8 THR n 1 9 ILE n 1 10 GLU n 1 11 ASN n 1 12 GLN n 1 13 PRO n 1 14 TRP n 1 15 PHE n 1 16 ALA n 1 17 ALA n 1 18 ILE n 1 19 TYR n 1 20 ARG n 1 21 ARG n 1 22 HIS n 1 23 ARG n 1 24 GLY n 1 25 GLY n 1 26 SER n 1 27 VAL n 1 28 THR n 1 29 TYR n 1 30 VAL n 1 31 CYS n 1 32 GLY n 1 33 GLY n 1 34 SER n 1 35 LEU n 1 36 MET n 1 37 SER n 1 38 PRO n 1 39 CYS n 1 40 TRP n 1 41 VAL n 1 42 ILE n 1 43 SER n 1 44 ALA n 1 45 THR n 1 46 HIS n 1 47 CYS n 1 48 PHE n 1 49 ILE n 1 50 ASP n 1 51 TYR n 1 52 PRO n 1 53 LYS n 1 54 LYS n 1 55 GLU n 1 56 ASP n 1 57 TYR n 1 58 ILE n 1 59 VAL n 1 60 TYR n 1 61 LEU n 1 62 GLY n 1 63 ARG n 1 64 SER n 1 65 ARG n 1 66 LEU n 1 67 ASN n 1 68 SER n 1 69 ASN n 1 70 THR n 1 71 GLN n 1 72 GLY n 1 73 GLU n 1 74 MET n 1 75 LYS n 1 76 PHE n 1 77 GLU n 1 78 VAL n 1 79 GLU n 1 80 ASN n 1 81 LEU n 1 82 ILE n 1 83 LEU n 1 84 HIS n 1 85 LYS n 1 86 ASP n 1 87 TYR n 1 88 SER n 1 89 ALA n 1 90 ASP n 1 91 THR n 1 92 LEU n 1 93 ALA n 1 94 HIS n 1 95 HIS n 1 96 ASN n 1 97 ASP n 1 98 ILE n 1 99 ALA n 1 100 LEU n 1 101 LEU n 1 102 LYS n 1 103 ILE n 1 104 ARG n 1 105 SER n 1 106 LYS n 1 107 GLU n 1 108 GLY n 1 109 ARG n 1 110 CYS n 1 111 ALA n 1 112 GLN n 1 113 PRO n 1 114 SER n 1 115 ARG n 1 116 THR n 1 117 ILE n 1 118 GLN n 1 119 THR n 1 120 ILE n 1 121 ALA n 1 122 LEU n 1 123 PRO n 1 124 SER n 1 125 MET n 1 126 TYR n 1 127 ASN n 1 128 ASP n 1 129 PRO n 1 130 GLN n 1 131 PHE n 1 132 GLY n 1 133 THR n 1 134 SER n 1 135 CYS n 1 136 GLU n 1 137 ILE n 1 138 THR n 1 139 GLY n 1 140 PHE n 1 141 GLY n 1 142 LYS n 1 143 GLU n 1 144 ASN n 1 145 SER n 1 146 THR n 1 147 ASP n 1 148 TYR n 1 149 LEU n 1 150 TYR n 1 151 PRO n 1 152 GLU n 1 153 GLN n 1 154 LEU n 1 155 LYS n 1 156 MET n 1 157 THR n 1 158 VAL n 1 159 VAL n 1 160 LYS n 1 161 LEU n 1 162 ILE n 1 163 SER n 1 164 HIS n 1 165 ARG n 1 166 GLU n 1 167 CYS n 1 168 GLN n 1 169 GLN n 1 170 PRO n 1 171 HIS n 1 172 TYR n 1 173 TYR n 1 174 GLY n 1 175 SER n 1 176 GLU n 1 177 VAL n 1 178 THR n 1 179 THR n 1 180 LYS n 1 181 MET n 1 182 LEU n 1 183 CYS n 1 184 ALA n 1 185 ALA n 1 186 ASP n 1 187 PRO n 1 188 GLN n 1 189 TRP n 1 190 LYS n 1 191 THR n 1 192 ASP n 1 193 SER n 1 194 CYS n 1 195 GLN n 1 196 GLY n 1 197 ASP n 1 198 SER n 1 199 GLY n 1 200 GLY n 1 201 PRO n 1 202 LEU n 1 203 VAL n 1 204 CYS n 1 205 SER n 1 206 LEU n 1 207 GLN n 1 208 GLY n 1 209 ARG n 1 210 MET n 1 211 THR n 1 212 LEU n 1 213 THR n 1 214 GLY n 1 215 ILE n 1 216 VAL n 1 217 SER n 1 218 TRP n 1 219 GLY n 1 220 ARG n 1 221 GLY n 1 222 CYS n 1 223 ALA n 1 224 LEU n 1 225 LYS n 1 226 ASP n 1 227 LYS n 1 228 PRO n 1 229 GLY n 1 230 VAL n 1 231 TYR n 1 232 THR n 1 233 ARG n 1 234 VAL n 1 235 SER n 1 236 HIS n 1 237 PHE n 1 238 LEU n 1 239 PRO n 1 240 TRP n 1 241 ILE n 1 242 ARG n 1 243 SER n 1 244 HIS n 1 245 THR n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene ? _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name 'fall armyworm' _entity_src_gen.pdbx_host_org_scientific_name 'Spodoptera frugiperda' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 7108 _entity_src_gen.host_org_genus Spodoptera _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector BACULOVIRUS _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_code UROK_HUMAN _struct_ref.db_name UNP _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P00749 _struct_ref.pdbx_align_begin 179 _struct_ref.pdbx_seq_one_letter_code ;IIGGEFTTIENQPWFAAIYRRHRGGSVTYVCGGSLMSPCWVISATHCFIDYPKKEDYIVYLGRSRLNSNTQGEMKFEVEN LILHKDYSADTLAHHNDIALLKIRSKEGRCAQPSRTIQTICLPSMYNDPQFGTSCEITGFGKENSTDYLYPEQLKMTVVK LISHRECQQPHYYGSEVTTKMLCAADPQWKTDSCQGDSGGPLVCSLQGRMTLTGIVSWGRGCALKDKPGVYTRVSHFLPW IRSHT ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 1FV9 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 245 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P00749 _struct_ref_seq.db_align_beg 179 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 423 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 244 # _struct_ref_seq_dif.align_id 1 _struct_ref_seq_dif.pdbx_pdb_id_code 1FV9 _struct_ref_seq_dif.mon_id ALA _struct_ref_seq_dif.pdbx_pdb_strand_id A _struct_ref_seq_dif.seq_num 121 _struct_ref_seq_dif.pdbx_pdb_ins_code ? _struct_ref_seq_dif.pdbx_seq_db_name UNP _struct_ref_seq_dif.pdbx_seq_db_accession_code P00749 _struct_ref_seq_dif.db_mon_id CYS _struct_ref_seq_dif.pdbx_seq_db_seq_num 299 _struct_ref_seq_dif.details CONFLICT _struct_ref_seq_dif.pdbx_auth_seq_num 120 _struct_ref_seq_dif.pdbx_ordinal 1 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 172 non-polymer . 2-AMINO-5-HYDROXY-BENZIMIDAZOLE ? 'C7 H7 N3 O' 149.150 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 1FV9 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 43.58 _exptl_crystal.density_Matthews 2.18 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.pH ? _exptl_crystal_grow.temp 291.0 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_details '0.15M LiSo4, 20% PEG 4000, succinate buffer, VAPOR DIFFUSION, HANGING DROP, temperature 18K' _exptl_crystal_grow.pdbx_pH_range . # _diffrn.id 1 _diffrn.ambient_temp 160 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type 'RIGAKU RAXIS II' _diffrn_detector.pdbx_collection_date ? _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.54 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source 'ROTATING ANODE' _diffrn_source.type RIGAKU _diffrn_source.pdbx_wavelength 1.54 _diffrn_source.pdbx_synchrotron_site ? _diffrn_source.pdbx_synchrotron_beamline ? _diffrn_source.pdbx_wavelength_list ? # _refine.entry_id 1FV9 _refine.ls_number_reflns_obs 2625 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF 10000000.00 _refine.pdbx_data_cutoff_low_absF 0.00 _refine.ls_d_res_low 10.00 _refine.ls_d_res_high 3.00 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.248 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.248 _refine.ls_R_factor_R_free ? _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free ? _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 11.3 _refine.aniso_B[1][1] 0.00 _refine.aniso_B[2][2] 0.00 _refine.aniso_B[3][3] 0.00 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct ? _refine.pdbx_isotropic_thermal_model RESTRAINED _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_B ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_ML ? _refine.pdbx_overall_ESU_R ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_phase_error ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_analyze.entry_id 1FV9 _refine_analyze.Luzzati_coordinate_error_obs 0.35 _refine_analyze.Luzzati_sigma_a_obs 0.27 _refine_analyze.Luzzati_d_res_low_obs 5.00 _refine_analyze.Luzzati_coordinate_error_free ? _refine_analyze.Luzzati_sigma_a_free ? _refine_analyze.Luzzati_d_res_low_free ? _refine_analyze.number_disordered_residues ? _refine_analyze.occupancy_sum_hydrogen ? _refine_analyze.occupancy_sum_non_hydrogen ? _refine_analyze.pdbx_Luzzati_d_res_high_obs ? _refine_analyze.pdbx_refine_id 'X-RAY DIFFRACTION' # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1933 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 16 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 1949 _refine_hist.d_res_high 3.00 _refine_hist.d_res_low 10.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.026 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 3.5 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 28.9 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 2.35 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it 1.67 1.50 ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it 2.48 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scbond_it 2.74 2.00 ? ? 'X-RAY DIFFRACTION' ? x_scangle_it 4.04 2.50 ? ? 'X-RAY DIFFRACTION' ? # _refine_ls_shell.pdbx_total_number_of_bins_used 6 _refine_ls_shell.d_res_high 3.00 _refine_ls_shell.d_res_low 3.18 _refine_ls_shell.number_reflns_R_work 460 _refine_ls_shell.R_factor_R_work 0.251 _refine_ls_shell.percent_reflns_obs ? _refine_ls_shell.R_factor_R_free ? _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.number_reflns_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_ls_shell.R_factor_all ? # _struct.entry_id 1FV9 _struct.title 'Crystal structure of human microurokinase in complex with 2-amino-5-hydroxy-benzimidazole' _struct.pdbx_descriptor 'UROKINASE (E.C.3.4.21.73)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 1FV9 _struct_keywords.pdbx_keywords 'BLOOD CLOTTING' _struct_keywords.text 'Plasminogen activation, BLOOD CLOTTING' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 _struct_biol.pdbx_parent_biol_id ? _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 THR A 8 ? GLN A 12 ? THR A 8 GLN A 12 5 ? 5 HELX_P HELX_P2 2 ALA A 44 ? PHE A 48 ? ALA A 43 PHE A 47 5 ? 5 HELX_P HELX_P3 3 LYS A 53 ? GLU A 55 ? LYS A 52 GLU A 54 5 ? 3 HELX_P HELX_P4 4 SER A 163 ? GLN A 168 ? SER A 162 GLN A 167 1 ? 6 HELX_P HELX_P5 5 TYR A 173 ? VAL A 177 ? TYR A 172 VAL A 176 5 ? 5 HELX_P HELX_P6 6 PHE A 237 ? SER A 243 ? PHE A 236 SER A 242 1 ? 7 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 31 SG ? ? ? 1_555 A CYS 47 SG ? ? A CYS 30 A CYS 46 1_555 ? ? ? ? ? ? ? 1.954 ? disulf2 disulf ? ? A CYS 39 SG ? ? ? 1_555 A CYS 110 SG ? ? A CYS 38 A CYS 109 1_555 ? ? ? ? ? ? ? 2.006 ? disulf3 disulf ? ? A CYS 135 SG ? ? ? 1_555 A CYS 204 SG ? ? A CYS 134 A CYS 203 1_555 ? ? ? ? ? ? ? 2.010 ? disulf4 disulf ? ? A CYS 167 SG ? ? ? 1_555 A CYS 183 SG ? ? A CYS 166 A CYS 182 1_555 ? ? ? ? ? ? ? 2.036 ? disulf5 disulf ? ? A CYS 194 SG ? ? ? 1_555 A CYS 222 SG ? ? A CYS 193 A CYS 221 1_555 ? ? ? ? ? ? ? 2.021 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 3 ? B ? 7 ? C ? 2 ? D ? 4 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? anti-parallel B 4 5 ? anti-parallel B 5 6 ? anti-parallel B 6 7 ? anti-parallel C 1 2 ? anti-parallel D 1 2 ? anti-parallel D 2 3 ? anti-parallel D 3 4 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 5 ? PHE A 6 ? GLU A 5 PHE A 6 A 2 LYS A 155 ? LYS A 160 ? LYS A 154 LYS A 159 A 3 SER A 134 ? GLY A 139 ? SER A 133 GLY A 138 B 1 SER A 26 ? CYS A 31 ? SER A 25 CYS A 30 B 2 ALA A 17 ? HIS A 22 ? ALA A 17 HIS A 22 B 3 TYR A 57 ? LEU A 61 ? TYR A 56 LEU A 60 B 4 MET A 74 ? LEU A 83 ? MET A 73 LEU A 82 B 5 ALA A 99 ? ARG A 104 ? ALA A 98 ARG A 103 B 6 TRP A 40 ? SER A 43 ? TRP A 39 SER A 42 B 7 SER A 34 ? SER A 37 ? SER A 33 SER A 36 C 1 SER A 88 ? ALA A 89 ? SER A 87 ALA A 88 C 2 HIS A 94 ? HIS A 95 ? HIS A 93 HIS A 94 D 1 MET A 181 ? ALA A 184 ? MET A 180 ALA A 183 D 2 LYS A 227 ? ARG A 233 ? LYS A 226 ARG A 232 D 3 ARG A 209 ? LEU A 224 ? ARG A 208 LEU A 223 D 4 PRO A 201 ? LEU A 206 ? PRO A 200 LEU A 205 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLU A 5 ? O GLU A 5 N MET A 156 ? N MET A 155 A 2 3 O VAL A 159 ? O VAL A 158 N CYS A 135 ? N CYS A 134 B 1 2 O CYS A 31 ? O CYS A 30 N ILE A 18 ? N ILE A 18 B 2 3 N TYR A 19 ? N TYR A 19 O ILE A 58 ? O ILE A 57 B 3 4 O LEU A 61 ? O LEU A 60 N MET A 74 ? N MET A 73 B 4 5 N ILE A 82 ? N ILE A 81 O LEU A 100 ? O LEU A 99 B 5 6 N LEU A 101 ? N LEU A 100 O VAL A 41 ? O VAL A 40 B 6 7 N ILE A 42 ? N ILE A 41 O SER A 34 ? O SER A 33 C 1 2 O SER A 88 ? O SER A 87 N HIS A 95 ? N HIS A 94 D 1 2 O ALA A 184 ? O ALA A 183 N GLY A 229 ? N GLY A 228 D 2 3 N THR A 232 ? N THR A 231 O ILE A 215 ? O ILE A 214 D 3 4 O GLY A 214 ? O GLY A 213 N LEU A 202 ? N LEU A 201 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE SO4 A 245' AC2 Software ? ? ? ? 9 'BINDING SITE FOR RESIDUE 172 A 246' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 5 HIS A 46 ? HIS A 45 . ? 1_555 ? 2 AC1 5 GLN A 195 ? GLN A 194 . ? 1_555 ? 3 AC1 5 GLY A 196 ? GLY A 195 . ? 1_555 ? 4 AC1 5 SER A 198 ? SER A 197 . ? 1_555 ? 5 AC1 5 172 C . ? 172 A 246 . ? 1_555 ? 6 AC2 9 ASP A 192 ? ASP A 191 . ? 1_555 ? 7 AC2 9 SER A 193 ? SER A 192 . ? 1_555 ? 8 AC2 9 CYS A 194 ? CYS A 193 . ? 1_555 ? 9 AC2 9 GLN A 195 ? GLN A 194 . ? 1_555 ? 10 AC2 9 VAL A 216 ? VAL A 215 . ? 1_555 ? 11 AC2 9 GLY A 219 ? GLY A 218 . ? 1_555 ? 12 AC2 9 GLY A 221 ? GLY A 220 . ? 1_555 ? 13 AC2 9 GLY A 229 ? GLY A 228 . ? 1_555 ? 14 AC2 9 SO4 B . ? SO4 A 245 . ? 1_555 ? # _database_PDB_matrix.entry_id 1FV9 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 1FV9 _atom_sites.fract_transf_matrix[1][1] 0.018129 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.018868 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.012151 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ILE 1 1 1 ILE ILE A . n A 1 2 ILE 2 2 2 ILE ILE A . n A 1 3 GLY 3 3 3 GLY GLY A . n A 1 4 GLY 4 4 4 GLY GLY A . n A 1 5 GLU 5 5 5 GLU GLU A . n A 1 6 PHE 6 6 6 PHE PHE A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 THR 8 8 8 THR THR A . n A 1 9 ILE 9 9 9 ILE ILE A . n A 1 10 GLU 10 10 10 GLU GLU A . n A 1 11 ASN 11 11 11 ASN ASN A . n A 1 12 GLN 12 12 12 GLN GLN A . n A 1 13 PRO 13 13 13 PRO PRO A . n A 1 14 TRP 14 14 14 TRP TRP A . n A 1 15 PHE 15 15 15 PHE PHE A . n A 1 16 ALA 16 16 16 ALA ALA A . n A 1 17 ALA 17 17 17 ALA ALA A . n A 1 18 ILE 18 18 18 ILE ILE A . n A 1 19 TYR 19 19 19 TYR TYR A . n A 1 20 ARG 20 20 20 ARG ARG A . n A 1 21 ARG 21 21 21 ARG ARG A . n A 1 22 HIS 22 22 22 HIS HIS A . n A 1 23 ARG 23 23 23 ARG ARG A . n A 1 24 GLY 24 23 23 GLY GLY A A n A 1 25 GLY 25 24 24 GLY GLY A . n A 1 26 SER 26 25 25 SER SER A . n A 1 27 VAL 27 26 26 VAL VAL A . n A 1 28 THR 28 27 27 THR THR A . n A 1 29 TYR 29 28 28 TYR TYR A . n A 1 30 VAL 30 29 29 VAL VAL A . n A 1 31 CYS 31 30 30 CYS CYS A . n A 1 32 GLY 32 31 31 GLY GLY A . n A 1 33 GLY 33 32 32 GLY GLY A . n A 1 34 SER 34 33 33 SER SER A . n A 1 35 LEU 35 34 34 LEU LEU A . n A 1 36 MET 36 35 35 MET MET A . n A 1 37 SER 37 36 36 SER SER A . n A 1 38 PRO 38 37 37 PRO PRO A . n A 1 39 CYS 39 38 38 CYS CYS A . n A 1 40 TRP 40 39 39 TRP TRP A . n A 1 41 VAL 41 40 40 VAL VAL A . n A 1 42 ILE 42 41 41 ILE ILE A . n A 1 43 SER 43 42 42 SER SER A . n A 1 44 ALA 44 43 43 ALA ALA A . n A 1 45 THR 45 44 44 THR THR A . n A 1 46 HIS 46 45 45 HIS HIS A . n A 1 47 CYS 47 46 46 CYS CYS A . n A 1 48 PHE 48 47 47 PHE PHE A . n A 1 49 ILE 49 48 48 ILE ILE A . n A 1 50 ASP 50 49 49 ASP ASP A . n A 1 51 TYR 51 50 50 TYR TYR A . n A 1 52 PRO 52 51 51 PRO PRO A . n A 1 53 LYS 53 52 52 LYS LYS A . n A 1 54 LYS 54 53 53 LYS LYS A . n A 1 55 GLU 55 54 54 GLU GLU A . n A 1 56 ASP 56 55 55 ASP ASP A . n A 1 57 TYR 57 56 56 TYR TYR A . n A 1 58 ILE 58 57 57 ILE ILE A . n A 1 59 VAL 59 58 58 VAL VAL A . n A 1 60 TYR 60 59 59 TYR TYR A . n A 1 61 LEU 61 60 60 LEU LEU A . n A 1 62 GLY 62 61 61 GLY GLY A . n A 1 63 ARG 63 62 62 ARG ARG A . n A 1 64 SER 64 63 63 SER SER A . n A 1 65 ARG 65 64 64 ARG ARG A . n A 1 66 LEU 66 65 65 LEU LEU A . n A 1 67 ASN 67 66 66 ASN ASN A . n A 1 68 SER 68 67 67 SER SER A . n A 1 69 ASN 69 68 68 ASN ASN A . n A 1 70 THR 70 69 69 THR THR A . n A 1 71 GLN 71 70 70 GLN GLN A . n A 1 72 GLY 72 71 71 GLY GLY A . n A 1 73 GLU 73 72 72 GLU GLU A . n A 1 74 MET 74 73 73 MET MET A . n A 1 75 LYS 75 74 74 LYS LYS A . n A 1 76 PHE 76 75 75 PHE PHE A . n A 1 77 GLU 77 76 76 GLU GLU A . n A 1 78 VAL 78 77 77 VAL VAL A . n A 1 79 GLU 79 78 78 GLU GLU A . n A 1 80 ASN 80 79 79 ASN ASN A . n A 1 81 LEU 81 80 80 LEU LEU A . n A 1 82 ILE 82 81 81 ILE ILE A . n A 1 83 LEU 83 82 82 LEU LEU A . n A 1 84 HIS 84 83 83 HIS HIS A . n A 1 85 LYS 85 84 84 LYS LYS A . n A 1 86 ASP 86 85 85 ASP ASP A . n A 1 87 TYR 87 86 86 TYR TYR A . n A 1 88 SER 88 87 87 SER SER A . n A 1 89 ALA 89 88 88 ALA ALA A . n A 1 90 ASP 90 89 89 ASP ASP A . n A 1 91 THR 91 90 90 THR THR A . n A 1 92 LEU 92 91 91 LEU LEU A . n A 1 93 ALA 93 92 92 ALA ALA A . n A 1 94 HIS 94 93 93 HIS HIS A . n A 1 95 HIS 95 94 94 HIS HIS A . n A 1 96 ASN 96 95 95 ASN ASN A . n A 1 97 ASP 97 96 96 ASP ASP A . n A 1 98 ILE 98 97 97 ILE ILE A . n A 1 99 ALA 99 98 98 ALA ALA A . n A 1 100 LEU 100 99 99 LEU LEU A . n A 1 101 LEU 101 100 100 LEU LEU A . n A 1 102 LYS 102 101 101 LYS LYS A . n A 1 103 ILE 103 102 102 ILE ILE A . n A 1 104 ARG 104 103 103 ARG ARG A . n A 1 105 SER 105 104 104 SER SER A . n A 1 106 LYS 106 105 105 LYS LYS A . n A 1 107 GLU 107 106 106 GLU GLU A . n A 1 108 GLY 108 107 107 GLY GLY A . n A 1 109 ARG 109 108 108 ARG ARG A . n A 1 110 CYS 110 109 109 CYS CYS A . n A 1 111 ALA 111 110 110 ALA ALA A . n A 1 112 GLN 112 111 111 GLN GLN A . n A 1 113 PRO 113 112 112 PRO PRO A . n A 1 114 SER 114 113 113 SER SER A . n A 1 115 ARG 115 114 114 ARG ARG A . n A 1 116 THR 116 115 115 THR THR A . n A 1 117 ILE 117 116 116 ILE ILE A . n A 1 118 GLN 118 117 117 GLN GLN A . n A 1 119 THR 119 118 118 THR THR A . n A 1 120 ILE 120 119 119 ILE ILE A . n A 1 121 ALA 121 120 120 ALA ALA A . n A 1 122 LEU 122 121 121 LEU LEU A . n A 1 123 PRO 123 122 122 PRO PRO A . n A 1 124 SER 124 123 123 SER SER A . n A 1 125 MET 125 124 124 MET MET A . n A 1 126 TYR 126 125 125 TYR TYR A . n A 1 127 ASN 127 126 126 ASN ASN A . n A 1 128 ASP 128 127 127 ASP ASP A . n A 1 129 PRO 129 128 128 PRO PRO A . n A 1 130 GLN 130 129 129 GLN GLN A . n A 1 131 PHE 131 130 130 PHE PHE A . n A 1 132 GLY 132 131 131 GLY GLY A . n A 1 133 THR 133 132 132 THR THR A . n A 1 134 SER 134 133 133 SER SER A . n A 1 135 CYS 135 134 134 CYS CYS A . n A 1 136 GLU 136 135 135 GLU GLU A . n A 1 137 ILE 137 136 136 ILE ILE A . n A 1 138 THR 138 137 137 THR THR A . n A 1 139 GLY 139 138 138 GLY GLY A . n A 1 140 PHE 140 139 139 PHE PHE A . n A 1 141 GLY 141 140 140 GLY GLY A . n A 1 142 LYS 142 141 141 LYS LYS A . n A 1 143 GLU 143 142 142 GLU GLU A . n A 1 144 ASN 144 143 143 ASN ASN A . n A 1 145 SER 145 144 144 SER SER A . n A 1 146 THR 146 145 145 THR THR A . n A 1 147 ASP 147 146 146 ASP ASP A . n A 1 148 TYR 148 147 147 TYR TYR A . n A 1 149 LEU 149 148 148 LEU LEU A . n A 1 150 TYR 150 149 149 TYR TYR A . n A 1 151 PRO 151 150 150 PRO PRO A . n A 1 152 GLU 152 151 151 GLU GLU A . n A 1 153 GLN 153 152 152 GLN GLN A . n A 1 154 LEU 154 153 153 LEU LEU A . n A 1 155 LYS 155 154 154 LYS LYS A . n A 1 156 MET 156 155 155 MET MET A . n A 1 157 THR 157 156 156 THR THR A . n A 1 158 VAL 158 157 157 VAL VAL A . n A 1 159 VAL 159 158 158 VAL VAL A . n A 1 160 LYS 160 159 159 LYS LYS A . n A 1 161 LEU 161 160 160 LEU LEU A . n A 1 162 ILE 162 161 161 ILE ILE A . n A 1 163 SER 163 162 162 SER SER A . n A 1 164 HIS 164 163 163 HIS HIS A . n A 1 165 ARG 165 164 164 ARG ARG A . n A 1 166 GLU 166 165 165 GLU GLU A . n A 1 167 CYS 167 166 166 CYS CYS A . n A 1 168 GLN 168 167 167 GLN GLN A . n A 1 169 GLN 169 168 168 GLN GLN A . n A 1 170 PRO 170 169 169 PRO PRO A . n A 1 171 HIS 171 170 170 HIS HIS A . n A 1 172 TYR 172 171 171 TYR TYR A . n A 1 173 TYR 173 172 172 TYR TYR A . n A 1 174 GLY 174 173 173 GLY GLY A . n A 1 175 SER 175 174 174 SER SER A . n A 1 176 GLU 176 175 175 GLU GLU A . n A 1 177 VAL 177 176 176 VAL VAL A . n A 1 178 THR 178 177 177 THR THR A . n A 1 179 THR 179 178 178 THR THR A . n A 1 180 LYS 180 179 179 LYS LYS A . n A 1 181 MET 181 180 180 MET MET A . n A 1 182 LEU 182 181 181 LEU LEU A . n A 1 183 CYS 183 182 182 CYS CYS A . n A 1 184 ALA 184 183 183 ALA ALA A . n A 1 185 ALA 185 184 184 ALA ALA A . n A 1 186 ASP 186 185 185 ASP ASP A . n A 1 187 PRO 187 186 186 PRO PRO A . n A 1 188 GLN 188 187 187 GLN GLN A . n A 1 189 TRP 189 188 188 TRP TRP A . n A 1 190 LYS 190 189 189 LYS LYS A . n A 1 191 THR 191 190 190 THR THR A . n A 1 192 ASP 192 191 191 ASP ASP A . n A 1 193 SER 193 192 192 SER SER A . n A 1 194 CYS 194 193 193 CYS CYS A . n A 1 195 GLN 195 194 194 GLN GLN A . n A 1 196 GLY 196 195 195 GLY GLY A . n A 1 197 ASP 197 196 196 ASP ASP A . n A 1 198 SER 198 197 197 SER SER A . n A 1 199 GLY 199 198 198 GLY GLY A . n A 1 200 GLY 200 199 199 GLY GLY A . n A 1 201 PRO 201 200 200 PRO PRO A . n A 1 202 LEU 202 201 201 LEU LEU A . n A 1 203 VAL 203 202 202 VAL VAL A . n A 1 204 CYS 204 203 203 CYS CYS A . n A 1 205 SER 205 204 204 SER SER A . n A 1 206 LEU 206 205 205 LEU LEU A . n A 1 207 GLN 207 206 206 GLN GLN A . n A 1 208 GLY 208 207 207 GLY GLY A . n A 1 209 ARG 209 208 208 ARG ARG A . n A 1 210 MET 210 209 209 MET MET A . n A 1 211 THR 211 210 210 THR THR A . n A 1 212 LEU 212 211 211 LEU LEU A . n A 1 213 THR 213 212 212 THR THR A . n A 1 214 GLY 214 213 213 GLY GLY A . n A 1 215 ILE 215 214 214 ILE ILE A . n A 1 216 VAL 216 215 215 VAL VAL A . n A 1 217 SER 217 216 216 SER SER A . n A 1 218 TRP 218 217 217 TRP TRP A . n A 1 219 GLY 219 218 218 GLY GLY A . n A 1 220 ARG 220 219 219 ARG ARG A . n A 1 221 GLY 221 220 220 GLY GLY A . n A 1 222 CYS 222 221 221 CYS CYS A . n A 1 223 ALA 223 222 222 ALA ALA A . n A 1 224 LEU 224 223 223 LEU LEU A . n A 1 225 LYS 225 224 224 LYS LYS A . n A 1 226 ASP 226 225 225 ASP ASP A . n A 1 227 LYS 227 226 226 LYS LYS A . n A 1 228 PRO 228 227 227 PRO PRO A . n A 1 229 GLY 229 228 228 GLY GLY A . n A 1 230 VAL 230 229 229 VAL VAL A . n A 1 231 TYR 231 230 230 TYR TYR A . n A 1 232 THR 232 231 231 THR THR A . n A 1 233 ARG 233 232 232 ARG ARG A . n A 1 234 VAL 234 233 233 VAL VAL A . n A 1 235 SER 235 234 234 SER SER A . n A 1 236 HIS 236 235 235 HIS HIS A . n A 1 237 PHE 237 236 236 PHE PHE A . n A 1 238 LEU 238 237 237 LEU LEU A . n A 1 239 PRO 239 238 238 PRO PRO A . n A 1 240 TRP 240 239 239 TRP TRP A . n A 1 241 ILE 241 240 240 ILE ILE A . n A 1 242 ARG 242 241 241 ARG ARG A . n A 1 243 SER 243 242 242 SER SER A . n A 1 244 HIS 244 243 243 HIS HIS A . n A 1 245 THR 245 244 244 THR THR A . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 SO4 1 245 1 SO4 SO4 A . C 3 172 1 246 1 172 172 A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2000-10-18 2 'Structure model' 1 1 2008-04-27 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2017-10-04 5 'Structure model' 1 4 2018-01-31 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Refinement description' 4 5 'Structure model' 'Experimental preparation' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' software 2 5 'Structure model' exptl_crystal_grow # _pdbx_audit_revision_item.ordinal 1 _pdbx_audit_revision_item.revision_ordinal 5 _pdbx_audit_revision_item.data_content_type 'Structure model' _pdbx_audit_revision_item.item '_exptl_crystal_grow.temp' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal SCALEPACK 'data scaling' . ? 1 AMoRE phasing . ? 2 X-PLOR refinement 98.0 ? 3 # loop_ _pdbx_validate_rmsd_bond.id _pdbx_validate_rmsd_bond.PDB_model_num _pdbx_validate_rmsd_bond.auth_atom_id_1 _pdbx_validate_rmsd_bond.auth_asym_id_1 _pdbx_validate_rmsd_bond.auth_comp_id_1 _pdbx_validate_rmsd_bond.auth_seq_id_1 _pdbx_validate_rmsd_bond.PDB_ins_code_1 _pdbx_validate_rmsd_bond.label_alt_id_1 _pdbx_validate_rmsd_bond.auth_atom_id_2 _pdbx_validate_rmsd_bond.auth_asym_id_2 _pdbx_validate_rmsd_bond.auth_comp_id_2 _pdbx_validate_rmsd_bond.auth_seq_id_2 _pdbx_validate_rmsd_bond.PDB_ins_code_2 _pdbx_validate_rmsd_bond.label_alt_id_2 _pdbx_validate_rmsd_bond.bond_value _pdbx_validate_rmsd_bond.bond_target_value _pdbx_validate_rmsd_bond.bond_deviation _pdbx_validate_rmsd_bond.bond_standard_deviation _pdbx_validate_rmsd_bond.linker_flag 1 1 CB A SER 33 ? ? OG A SER 33 ? ? 1.505 1.418 0.087 0.013 N 2 1 CG A GLU 78 ? ? CD A GLU 78 ? ? 1.606 1.515 0.091 0.015 N 3 1 CB A SER 197 ? ? OG A SER 197 ? ? 1.331 1.418 -0.087 0.013 N 4 1 NE A ARG 241 ? ? CZ A ARG 241 ? ? 1.412 1.326 0.086 0.013 N # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH1 A ARG 21 ? ? 124.23 120.30 3.93 0.50 N 2 1 NE A ARG 21 ? ? CZ A ARG 21 ? ? NH2 A ARG 21 ? ? 116.50 120.30 -3.80 0.50 N 3 1 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH1 A ARG 23 ? ? 123.39 120.30 3.09 0.50 N 4 1 NE A ARG 23 ? ? CZ A ARG 23 ? ? NH2 A ARG 23 ? ? 116.54 120.30 -3.76 0.50 N 5 1 CA A CYS 30 ? ? CB A CYS 30 ? ? SG A CYS 30 ? ? 121.68 114.20 7.48 1.10 N 6 1 N A SER 36 ? ? CA A SER 36 ? ? C A SER 36 ? ? 94.75 111.00 -16.25 2.70 N 7 1 CA A CYS 46 ? ? CB A CYS 46 ? ? SG A CYS 46 ? ? 129.47 114.20 15.27 1.10 N 8 1 CA A ASP 55 ? ? CB A ASP 55 ? ? CG A ASP 55 ? ? 129.97 113.40 16.57 2.20 N 9 1 NE A ARG 62 ? ? CZ A ARG 62 ? ? NH1 A ARG 62 ? ? 125.24 120.30 4.94 0.50 N 10 1 NE A ARG 62 ? ? CZ A ARG 62 ? ? NH2 A ARG 62 ? ? 114.43 120.30 -5.87 0.50 N 11 1 CA A SER 63 ? ? CB A SER 63 ? ? OG A SER 63 ? ? 135.34 111.20 24.14 2.70 N 12 1 N A GLN 70 ? ? CA A GLN 70 ? ? C A GLN 70 ? ? 128.38 111.00 17.38 2.70 N 13 1 CA A LEU 91 ? ? CB A LEU 91 ? ? CG A LEU 91 ? ? 144.07 115.30 28.77 2.30 N 14 1 CB A LEU 91 ? ? CG A LEU 91 ? ? CD1 A LEU 91 ? ? 98.84 111.00 -12.16 1.70 N 15 1 CB A LEU 91 ? ? CG A LEU 91 ? ? CD2 A LEU 91 ? ? 122.24 111.00 11.24 1.70 N 16 1 N A ALA 92 ? ? CA A ALA 92 ? ? C A ALA 92 ? ? 127.60 111.00 16.60 2.70 N 17 1 CB A ASP 96 ? ? CG A ASP 96 ? ? OD1 A ASP 96 ? ? 128.59 118.30 10.29 0.90 N 18 1 CB A ASP 96 ? ? CG A ASP 96 ? ? OD2 A ASP 96 ? ? 108.90 118.30 -9.40 0.90 N 19 1 CA A CYS 109 ? ? CB A CYS 109 ? ? SG A CYS 109 ? ? 102.89 114.00 -11.11 1.80 N 20 1 C A SER 113 ? ? N A ARG 114 ? ? CA A ARG 114 ? ? 136.94 121.70 15.24 2.50 Y 21 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH1 A ARG 114 ? ? 124.12 120.30 3.82 0.50 N 22 1 NE A ARG 114 ? ? CZ A ARG 114 ? ? NH2 A ARG 114 ? ? 116.83 120.30 -3.47 0.50 N 23 1 CA A ASN 143 ? ? CB A ASN 143 ? ? CG A ASN 143 ? ? 127.70 113.40 14.30 2.20 N 24 1 N A MET 180 ? ? CA A MET 180 ? ? C A MET 180 ? ? 91.39 111.00 -19.61 2.70 N 25 1 CA A LEU 181 ? ? CB A LEU 181 ? ? CG A LEU 181 ? ? 129.87 115.30 14.57 2.30 N 26 1 N A GLN 187 ? ? CA A GLN 187 ? ? C A GLN 187 ? ? 128.90 111.00 17.90 2.70 N 27 1 N A LYS 189 ? ? CA A LYS 189 ? ? C A LYS 189 ? ? 128.64 111.00 17.64 2.70 N 28 1 CA A ASP 196 ? ? CB A ASP 196 ? ? CG A ASP 196 ? ? 132.11 113.40 18.71 2.20 N 29 1 CB A ASP 196 ? ? CG A ASP 196 ? ? OD1 A ASP 196 ? ? 110.22 118.30 -8.08 0.90 N 30 1 NE A ARG 208 ? ? CZ A ARG 208 ? ? NH1 A ARG 208 ? ? 125.55 120.30 5.25 0.50 N 31 1 NE A ARG 208 ? ? CZ A ARG 208 ? ? NH2 A ARG 208 ? ? 114.94 120.30 -5.36 0.50 N 32 1 NE A ARG 219 ? ? CZ A ARG 219 ? ? NH1 A ARG 219 ? ? 124.60 120.30 4.30 0.50 N 33 1 NE A ARG 219 ? ? CZ A ARG 219 ? ? NH2 A ARG 219 ? ? 115.41 120.30 -4.89 0.50 N 34 1 CB A ASP 225 ? ? CG A ASP 225 ? ? OD1 A ASP 225 ? ? 127.93 118.30 9.63 0.90 N 35 1 CB A ASP 225 ? ? CG A ASP 225 ? ? OD2 A ASP 225 ? ? 108.14 118.30 -10.16 0.90 N 36 1 NE A ARG 241 ? ? CZ A ARG 241 ? ? NH1 A ARG 241 ? ? 125.18 120.30 4.88 0.50 N 37 1 NE A ARG 241 ? ? CZ A ARG 241 ? ? NH2 A ARG 241 ? ? 116.34 120.30 -3.96 0.50 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ARG A 23 ? ? -64.79 99.35 2 1 SER A 25 ? ? 69.81 -155.49 3 1 VAL A 29 ? ? -87.42 -70.29 4 1 SER A 36 ? ? -178.44 147.04 5 1 SER A 42 ? ? -164.09 -154.81 6 1 GLU A 54 ? ? -56.98 -9.47 7 1 LEU A 65 ? ? -25.72 -43.57 8 1 ASN A 66 ? ? -141.48 38.41 9 1 GLN A 70 ? ? -51.56 94.51 10 1 LYS A 84 ? ? -47.95 -6.34 11 1 LEU A 91 ? ? 79.01 -66.19 12 1 ASN A 95 ? ? 39.98 62.18 13 1 ARG A 103 ? ? 177.85 110.28 14 1 CYS A 109 ? ? -53.96 175.09 15 1 SER A 113 ? ? -79.62 -137.69 16 1 ILE A 116 ? ? -152.80 80.64 17 1 TYR A 125 ? ? 23.72 54.19 18 1 CYS A 134 ? ? -119.27 -166.67 19 1 TYR A 171 ? ? -93.73 -105.72 20 1 ALA A 183 ? ? -171.83 144.19 21 1 GLN A 187 ? ? -31.79 159.85 22 1 TRP A 188 ? ? 81.69 -22.78 23 1 ASP A 191 ? ? 174.81 178.02 24 1 CYS A 193 ? ? -177.01 -159.61 25 1 GLN A 206 ? ? 72.84 -20.14 26 1 LEU A 211 ? ? -64.12 73.18 27 1 SER A 216 ? ? -129.81 -56.72 28 1 ALA A 222 ? ? 76.69 46.97 29 1 LYS A 224 ? ? -56.58 109.33 30 1 ASP A 225 ? ? 95.54 2.18 # loop_ _pdbx_validate_peptide_omega.id _pdbx_validate_peptide_omega.PDB_model_num _pdbx_validate_peptide_omega.auth_comp_id_1 _pdbx_validate_peptide_omega.auth_asym_id_1 _pdbx_validate_peptide_omega.auth_seq_id_1 _pdbx_validate_peptide_omega.PDB_ins_code_1 _pdbx_validate_peptide_omega.label_alt_id_1 _pdbx_validate_peptide_omega.auth_comp_id_2 _pdbx_validate_peptide_omega.auth_asym_id_2 _pdbx_validate_peptide_omega.auth_seq_id_2 _pdbx_validate_peptide_omega.PDB_ins_code_2 _pdbx_validate_peptide_omega.label_alt_id_2 _pdbx_validate_peptide_omega.omega 1 1 SER A 25 ? ? VAL A 26 ? ? -149.41 2 1 PRO A 186 ? ? GLN A 187 ? ? -129.31 # _pdbx_validate_main_chain_plane.id 1 _pdbx_validate_main_chain_plane.PDB_model_num 1 _pdbx_validate_main_chain_plane.auth_comp_id LYS _pdbx_validate_main_chain_plane.auth_asym_id A _pdbx_validate_main_chain_plane.auth_seq_id 53 _pdbx_validate_main_chain_plane.PDB_ins_code ? _pdbx_validate_main_chain_plane.label_alt_id ? _pdbx_validate_main_chain_plane.improper_torsion_angle -14.40 # _pdbx_validate_planes.id 1 _pdbx_validate_planes.PDB_model_num 1 _pdbx_validate_planes.auth_comp_id TYR _pdbx_validate_planes.auth_asym_id A _pdbx_validate_planes.auth_seq_id 56 _pdbx_validate_planes.PDB_ins_code ? _pdbx_validate_planes.label_alt_id ? _pdbx_validate_planes.rmsd 0.081 _pdbx_validate_planes.type 'SIDE CHAIN' # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'SULFATE ION' SO4 3 2-AMINO-5-HYDROXY-BENZIMIDAZOLE 172 #