HEADER HYDROLASE 24-SEP-00 1FWO TITLE THE SOLUTION STRUCTURE OF A 35-RESIDUE FRAGMENT FROM THE TITLE 2 GRANULIN/EPITHELIN-LIKE SUBDOMAIN OF RICE ORYZAIN BETA (ROB 382-416 TITLE 3 (C398S,C399S,C407S,C413S)) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ORYZAIN BETA CHAIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: C-TERMINAL GRANULIN/EPITHELIN-LIKE EXTENSION (RESIDUES 382- COMPND 5 416); COMPND 6 EC: 3.4.22.-; COMPND 7 ENGINEERED: YES; COMPND 8 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 SYNTHETIC: YES; SOURCE 3 OTHER_DETAILS: THE PEPTIDE WAS CHEMICALLY SYNTHESIZED. THE SEQUENCE SOURCE 4 OF THE PEPTIDE NATURALLY OCCURS IN ORYZA SATIVA (RICE). KEYWDS BETA-HAIRPIN STACK FOLD, GRANULIN/EPITHELIN-LIKE PROTEIN REPEATS, KEYWDS 2 HYDROLASE EXPDTA SOLUTION NMR NUMMDL 10 AUTHOR D.TOLKATCHEV,P.XU,F.NI REVDAT 4 30-OCT-24 1FWO 1 REMARK REVDAT 3 03-NOV-21 1FWO 1 REMARK SEQADV REVDAT 2 24-FEB-09 1FWO 1 VERSN REVDAT 1 09-MAY-01 1FWO 0 JRNL AUTH D.TOLKATCHEV,P.XU,F.NI JRNL TITL A PEPTIDE DERIVED FROM THE C-TERMINAL PART OF A PLANT JRNL TITL 2 CYSTEINE PROTEASE FOLDS INTO A STACK OF TWO BETA-HAIRPINS, A JRNL TITL 3 SCAFFOLD PRESENT IN THE EMERGING FAMILY OF GRANULIN-LIKE JRNL TITL 4 GROWTH FACTORS. JRNL REF J.PEPT.RES. V. 57 227 2001 JRNL REFN ISSN 1397-002X JRNL PMID 11298924 REMARK 2 REMARK 2 RESOLUTION. NOT APPLICABLE. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : X-PLOR 3.1 REMARK 3 AUTHORS : BRUNGER REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: THE STRUCTURES ARE BASED ON A TOTAL OF REMARK 3 288 RESTRAINTS, 195 ARE UNAMBIGUOUS NOE-DERIVED DISTANCE REMARK 3 CONSTRAINTS, 91 AMBIGUOUS NOE-DERIVED DISTANCE CONSTRAINTS, 2 REMARK 3 DISTANCE RESTRAINTS FROM DISULFIDE BONDS. REMARK 4 REMARK 4 1FWO COMPLIES WITH FORMAT V. 3.15, 01-DEC-08 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 04-OCT-00. REMARK 100 THE DEPOSITION ID IS D_1000011962. REMARK 210 REMARK 210 EXPERIMENTAL DETAILS REMARK 210 EXPERIMENT TYPE : NMR REMARK 210 TEMPERATURE (KELVIN) : 288; 288 REMARK 210 PH : 2.0; 5.0 REMARK 210 IONIC STRENGTH : 0; 0.02 REMARK 210 PRESSURE : AMBIENT; AMBIENT REMARK 210 SAMPLE CONTENTS : 0.5 MM ROB 382-416 REMARK 210 (C398S,C399S,C407S,C413S), 90% REMARK 210 H2O, 10% D2O; 0.5 MM ROB 382-416 REMARK 210 (C398S,C399S,C407S,C413S), 20 MM REMARK 210 SODIUM ACETATE-D3, 90% H2O, 10% REMARK 210 D2O; 0.5 MM ROB 382-416 (C398S, REMARK 210 C399S,C407S,C413S), 100% D2O REMARK 210 REMARK 210 NMR EXPERIMENTS CONDUCTED : 2D NOESY REMARK 210 SPECTROMETER FIELD STRENGTH : 800 MHZ; 500 MHZ REMARK 210 SPECTROMETER MODEL : AVANCE REMARK 210 SPECTROMETER MANUFACTURER : BRUKER REMARK 210 REMARK 210 STRUCTURE DETERMINATION. REMARK 210 SOFTWARE USED : UXNMR 2.1, PRONTO 19990105 REMARK 210 METHOD USED : DISTANCE GEOMETRY AND SIMULATED REMARK 210 ANNEALING REMARK 210 REMARK 210 CONFORMERS, NUMBER CALCULATED : 200 REMARK 210 CONFORMERS, NUMBER SUBMITTED : 10 REMARK 210 CONFORMERS, SELECTION CRITERIA : STRUCTURES WITH THE LEAST REMARK 210 RESTRAINT VIOLATIONS REMARK 210 REMARK 210 BEST REPRESENTATIVE CONFORMER IN THIS ENSEMBLE : NULL REMARK 210 REMARK 210 REMARK: THIS STRUCTURE WAS DETERMINED USING STANDARD 2D REMARK 210 HOMONUCLEAR TECHNIQUES. REMARK 215 REMARK 215 NMR STUDY REMARK 215 THE COORDINATES IN THIS ENTRY WERE GENERATED FROM SOLUTION REMARK 215 NMR DATA. PROTEIN DATA BANK CONVENTIONS REQUIRE THAT REMARK 215 CRYST1 AND SCALE RECORDS BE INCLUDED, BUT THE VALUES ON REMARK 215 THESE RECORDS ARE MEANINGLESS. REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY A 13 HG SER A 14 1.58 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 1 VAL A 3 95.07 -169.49 REMARK 500 1 ASP A 5 -92.34 54.39 REMARK 500 1 ASP A 6 -86.11 -151.41 REMARK 500 1 ASN A 7 76.80 -67.17 REMARK 500 1 SER A 9 149.41 -172.60 REMARK 500 1 ALA A 12 23.96 45.48 REMARK 500 1 SER A 14 -164.43 -168.91 REMARK 500 1 SER A 18 115.79 61.63 REMARK 500 1 ARG A 23 -25.92 170.21 REMARK 500 1 ASN A 24 81.45 60.59 REMARK 500 1 SER A 26 -32.19 -177.29 REMARK 500 1 LEU A 27 111.74 56.97 REMARK 500 2 VAL A 3 116.44 57.39 REMARK 500 2 ASP A 6 -179.39 52.56 REMARK 500 2 ASN A 7 26.96 42.34 REMARK 500 2 SER A 9 -85.29 -134.23 REMARK 500 2 CYS A 10 118.01 56.92 REMARK 500 2 PRO A 11 -160.45 -72.69 REMARK 500 2 SER A 14 161.89 -40.33 REMARK 500 2 SER A 18 121.29 66.54 REMARK 500 2 ALA A 19 -157.81 -154.98 REMARK 500 2 PHE A 20 -116.49 -134.82 REMARK 500 2 ARG A 23 -53.55 -167.00 REMARK 500 2 ASN A 24 -68.73 -173.77 REMARK 500 2 SER A 26 167.47 66.22 REMARK 500 2 LEU A 27 -91.50 -44.61 REMARK 500 2 VAL A 28 109.66 61.28 REMARK 500 2 CYS A 31 140.00 -170.06 REMARK 500 3 ASP A 5 46.68 35.95 REMARK 500 3 ASP A 6 -179.53 53.95 REMARK 500 3 ASN A 7 -60.36 66.87 REMARK 500 3 PRO A 11 -88.11 -71.86 REMARK 500 3 ALA A 12 -39.80 -158.35 REMARK 500 3 SER A 18 113.67 58.05 REMARK 500 3 PHE A 20 -62.35 -150.96 REMARK 500 3 LEU A 25 18.83 -154.95 REMARK 500 3 TRP A 29 -160.87 -163.67 REMARK 500 3 VAL A 34 50.56 -103.82 REMARK 500 4 ASP A 6 -83.89 68.59 REMARK 500 4 ALA A 12 26.39 40.82 REMARK 500 4 SER A 14 -158.05 -174.06 REMARK 500 4 PHE A 20 -80.96 -123.50 REMARK 500 4 PHE A 22 -35.54 -158.38 REMARK 500 4 ARG A 23 -87.53 -100.73 REMARK 500 4 ASN A 24 62.23 -160.27 REMARK 500 4 LEU A 25 42.60 -91.42 REMARK 500 4 SER A 26 -160.14 70.21 REMARK 500 4 LEU A 27 -91.36 -73.16 REMARK 500 4 VAL A 28 75.95 64.81 REMARK 500 4 VAL A 34 36.47 -90.57 REMARK 500 REMARK 500 THIS ENTRY HAS 134 RAMACHANDRAN OUTLIERS. REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: PLANAR GROUPS REMARK 500 REMARK 500 PLANAR GROUPS IN THE FOLLOWING RESIDUES HAVE A TOTAL REMARK 500 RMS DISTANCE OF ALL ATOMS FROM THE BEST-FIT PLANE REMARK 500 BY MORE THAN AN EXPECTED VALUE OF 6*RMSD, WITH AN REMARK 500 RMSD 0.02 ANGSTROMS, OR AT LEAST ONE ATOM HAS REMARK 500 AN RMSD GREATER THAN THIS VALUE REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 M RES CSSEQI RMS TYPE REMARK 500 1 ARG A 23 0.31 SIDE CHAIN REMARK 500 2 ARG A 23 0.23 SIDE CHAIN REMARK 500 3 ARG A 23 0.29 SIDE CHAIN REMARK 500 4 ARG A 23 0.32 SIDE CHAIN REMARK 500 6 ARG A 23 0.31 SIDE CHAIN REMARK 500 7 ARG A 23 0.24 SIDE CHAIN REMARK 500 8 ARG A 23 0.31 SIDE CHAIN REMARK 500 9 ARG A 23 0.15 SIDE CHAIN REMARK 500 10 ARG A 23 0.10 SIDE CHAIN REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 1QGM RELATED DB: PDB REMARK 900 1QGM BELONGS TO THE SAME FAMILY OF GRANULIN/EPITHELIN-LIKE PROTEIN REMARK 900 REPEATS DBREF 1FWO A 1 35 UNP P25777 ORYB_ORYSA 382 416 SEQADV 1FWO SER A 17 UNP P25777 CYS 398 ENGINEERED MUTATION SEQADV 1FWO SER A 18 UNP P25777 CYS 399 ENGINEERED MUTATION SEQADV 1FWO SER A 26 UNP P25777 CYS 407 ENGINEERED MUTATION SEQADV 1FWO SER A 32 UNP P25777 CYS 413 ENGINEERED MUTATION SEQRES 1 A 35 ASP HIS VAL CYS ASP ASP ASN PHE SER CYS PRO ALA GLY SEQRES 2 A 35 SER THR CYS SER SER ALA PHE GLY PHE ARG ASN LEU SER SEQRES 3 A 35 LEU VAL TRP GLY CYS SER PRO VAL GLU SHEET 1 A 2 THR A 15 CYS A 16 0 SHEET 2 A 2 CYS A 31 SER A 32 -1 N SER A 32 O THR A 15 SSBOND 1 CYS A 4 CYS A 16 1555 1555 2.02 SSBOND 2 CYS A 10 CYS A 31 1555 1555 2.02 CRYST1 1.000 1.000 1.000 90.00 90.00 90.00 P 1 1 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 1.000000 0.000000 0.000000 0.00000 SCALE2 0.000000 1.000000 0.000000 0.00000 SCALE3 0.000000 0.000000 1.000000 0.00000 MODEL 1